Wall clock time and date at job start Mon Mar 30 2020 03:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46898 * 111.00496 * 2 1 4 4 C 1.50697 * 109.46941 * 66.04711 * 3 2 1 5 5 H 1.08003 * 120.00391 * 0.02562 * 4 3 2 6 6 C 1.37876 * 119.99897 * 180.02562 * 4 3 2 7 7 N 1.31512 * 120.00203 * 359.97438 * 6 4 3 8 8 Si 1.86806 * 119.99888 * 180.02562 * 6 4 3 9 9 H 1.48494 * 109.47313 * 60.00029 * 8 6 4 10 10 H 1.48502 * 109.46999 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47029 * 299.99378 * 8 6 4 12 12 C 1.46905 * 111.00026 * 236.04555 * 2 1 3 13 13 H 1.09006 * 112.94487 * 327.46865 * 12 2 1 14 14 C 1.53945 * 113.66286 * 98.87242 * 12 2 1 15 15 C 1.53957 * 87.29294 * 139.20996 * 14 12 2 16 16 H 1.09004 * 113.66191 * 220.79167 * 15 14 12 17 17 N 1.46896 * 113.65798 * 89.73807 * 15 14 12 18 18 C 1.52906 * 86.78169 * 335.26604 * 15 14 12 19 19 C 1.52905 * 121.13728 * 150.62396 * 18 15 14 20 20 C 1.53941 * 86.78293 * 100.81476 * 19 18 15 21 21 C 1.52905 * 121.13652 * 259.18344 * 18 15 14 22 22 H 1.09000 * 109.47333 * 178.45293 * 1 2 3 23 23 H 1.09000 * 109.46968 * 298.45852 * 1 2 3 24 24 H 1.09005 * 109.46817 * 58.45434 * 1 2 3 25 25 H 1.09005 * 109.47170 * 186.04346 * 3 2 1 26 26 H 1.08997 * 109.47026 * 306.04496 * 3 2 1 27 27 H 0.97007 * 120.00117 * 180.02562 * 7 6 4 28 28 H 1.09007 * 113.58002 * 24.61265 * 14 12 2 29 29 H 1.09004 * 113.65711 * 253.82514 * 14 12 2 30 30 H 1.00904 * 111.00119 * 82.81917 * 17 15 14 31 31 H 1.00906 * 110.99975 * 206.76400 * 17 15 14 32 32 H 1.09002 * 113.66566 * 346.33880 * 19 18 15 33 33 H 1.09003 * 113.66564 * 215.28701 * 19 18 15 34 34 H 1.09008 * 113.57974 * 139.33847 * 20 19 18 35 35 H 1.09005 * 113.58296 * 270.12843 * 20 19 18 36 36 H 1.09001 * 113.66836 * 144.71018 * 21 18 15 37 37 H 1.09008 * 113.66165 * 13.65168 * 21 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6371 2.0470 1.2984 5 1 1.0747 1.5112 2.0488 6 6 2.0270 3.3493 1.5285 7 7 2.7122 4.0017 0.6150 8 14 1.5833 4.1867 3.1383 9 1 2.1760 3.4295 4.2699 10 1 2.1155 5.5730 3.1383 11 1 0.1062 4.2230 3.2866 12 6 1.9955 -0.7660 -1.1376 13 1 1.3577 -1.6048 -1.4168 14 6 2.4199 0.1109 -2.3296 15 6 3.6415 -0.8138 -2.4810 16 1 4.5658 -0.2836 -2.7102 17 7 3.4053 -1.9622 -3.3661 18 6 3.4718 -1.1381 -0.9964 19 6 3.8949 -2.4939 -0.4299 20 6 5.1652 -1.7879 0.0777 21 6 4.3555 -0.4787 0.0630 22 1 -0.3634 -1.0273 -0.0277 23 1 -0.3633 0.4897 0.9035 24 1 -0.3633 0.5377 -0.8759 25 1 3.0799 1.3442 -0.1082 26 1 1.5613 1.9273 -0.8309 27 1 2.9869 4.9179 0.7770 28 1 2.6783 1.1322 -2.0494 29 1 1.7312 0.0654 -3.1732 30 1 3.5277 -1.7040 -4.3338 31 1 4.0030 -2.7371 -3.1203 32 1 4.0884 -3.2464 -1.1943 33 1 3.2470 -2.8560 0.3684 34 1 5.4689 -2.1016 1.0766 35 1 5.9869 -1.8006 -0.6384 36 1 3.8371 -0.2743 0.9998 37 1 4.9171 0.3789 -0.3079 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405225871.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:41 Heat of formation + Delta-G solvation = 53.732732 kcal Electronic energy + Delta-G solvation = -16483.418201 eV Core-core repulsion = 14069.209161 eV Total energy + Delta-G solvation = -2414.209040 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.42061 -35.84319 -34.33023 -32.39916 -30.44598 -27.40028 -25.21728 -25.01535 -24.08693 -22.77687 -21.02893 -19.38531 -17.07250 -16.49922 -15.74705 -15.28921 -15.20649 -14.42200 -14.32934 -13.57087 -13.41030 -12.71334 -12.36095 -11.92250 -11.79401 -11.62744 -11.25654 -11.24227 -10.98749 -10.76828 -10.66188 -10.52504 -10.30203 -9.77174 -9.74785 -9.55090 -9.39150 -8.93609 -8.43671 -8.33519 -7.02134 -5.98156 -3.98408 3.35607 3.39548 3.42680 4.45718 4.50819 4.90268 5.04538 5.08966 5.21599 5.31142 5.37982 5.45565 5.69483 5.85143 5.92595 6.06581 6.14144 6.22809 6.29303 6.37054 6.38277 6.47180 6.57580 6.65636 6.77802 6.83162 6.99694 7.09265 7.37369 7.44383 7.50659 7.55580 7.87642 8.20784 8.34798 8.67352 9.09849 9.65388 11.12368 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.033901 B = 0.008370 C = 0.007939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.735441 B = 3344.283227 C = 3526.085153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.531 5.531 3 C 0.188 3.812 4 C -0.506 4.506 5 H 0.060 0.940 6 C 0.056 3.944 7 N -0.899 5.899 8 Si 0.895 3.105 9 H -0.277 1.277 10 H -0.289 1.289 11 H -0.278 1.278 12 C 0.089 3.911 13 H 0.088 0.912 14 C -0.167 4.167 15 C 0.083 3.917 16 H 0.042 0.958 17 N -0.829 5.829 18 C -0.084 4.084 19 C -0.118 4.118 20 C -0.148 4.148 21 C -0.099 4.099 22 H 0.042 0.958 23 H 0.069 0.931 24 H 0.010 0.990 25 H 0.044 0.956 26 H -0.010 1.010 27 H 0.260 0.740 28 H 0.101 0.899 29 H 0.058 0.942 30 H 0.338 0.662 31 H 0.338 0.662 32 H 0.057 0.943 33 H 0.082 0.918 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.106 0.894 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.742 -10.354 -5.096 11.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.253 5.253 3 C 0.063 3.937 4 C -0.545 4.545 5 H 0.078 0.922 6 C -0.145 4.145 7 N -0.539 5.539 8 Si 0.723 3.277 9 H -0.202 1.202 10 H -0.215 1.215 11 H -0.204 1.204 12 C -0.021 4.021 13 H 0.106 0.894 14 C -0.207 4.207 15 C -0.029 4.029 16 H 0.060 0.940 17 N -0.359 5.359 18 C -0.085 4.085 19 C -0.155 4.155 20 C -0.185 4.185 21 C -0.137 4.137 22 H 0.060 0.940 23 H 0.088 0.912 24 H 0.029 0.971 25 H 0.062 0.938 26 H 0.008 0.992 27 H 0.070 0.930 28 H 0.119 0.881 29 H 0.077 0.923 30 H 0.150 0.850 31 H 0.152 0.848 32 H 0.075 0.925 33 H 0.101 0.899 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.125 0.875 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.228 -10.386 -4.381 11.491 hybrid contribution 0.530 1.150 -0.316 1.305 sum 2.758 -9.236 -4.696 10.722 Atomic orbital electron populations 1.22160 0.89246 0.98793 1.00605 1.62012 1.06401 1.17740 1.39129 1.19917 0.96270 0.81604 0.95921 1.21194 1.34556 0.96878 1.01887 0.92152 1.24957 0.95434 0.97356 0.96788 1.69942 1.38540 1.11409 1.34009 0.86618 0.78661 0.78361 0.84093 1.20243 1.21451 1.20394 1.22766 0.94353 0.96039 0.88915 0.89370 1.23813 0.97200 0.99938 0.99724 1.22039 0.96864 0.91817 0.92155 0.94013 1.58507 1.62576 1.08635 1.06217 1.22571 0.96375 0.96757 0.92812 1.22573 0.97241 0.95819 0.99884 1.22919 0.96547 0.98582 1.00480 1.22600 0.96031 0.95167 0.99906 0.93963 0.91196 0.97133 0.93827 0.99211 0.93014 0.88071 0.92317 0.84979 0.84831 0.92456 0.89940 0.91999 0.91510 0.87539 0.92090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.82 9.29 60.06 0.56 1.38 16 2 N -0.53 -11.57 4.38 -235.79 -1.03 -12.60 16 3 C 0.19 4.79 2.67 -4.98 -0.01 4.77 16 4 C -0.51 -14.14 8.54 -34.44 -0.29 -14.44 16 5 H 0.06 1.68 7.10 -52.48 -0.37 1.31 16 6 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 7 N -0.90 -26.49 13.29 55.43 0.74 -25.75 16 8 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 C 0.09 1.68 3.78 -67.26 -0.25 1.42 16 13 H 0.09 1.63 7.89 -51.93 -0.41 1.22 16 14 C -0.17 -3.08 6.88 -25.75 -0.18 -3.26 16 15 C 0.08 1.30 4.86 -67.26 -0.33 0.97 16 16 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 17 N -0.83 -10.54 9.40 -4.28 -0.04 -10.58 16 18 C -0.08 -1.41 0.90 -154.72 -0.14 -1.55 16 19 C -0.12 -1.72 7.66 -26.29 -0.20 -1.92 16 20 C -0.15 -2.15 8.08 -25.76 -0.21 -2.36 16 21 C -0.10 -1.80 5.37 -26.29 -0.14 -1.95 16 22 H 0.04 0.74 8.01 -51.93 -0.42 0.32 16 23 H 0.07 1.49 6.90 -51.93 -0.36 1.13 16 24 H 0.01 0.21 8.13 -51.93 -0.42 -0.21 16 25 H 0.04 1.15 4.76 -51.93 -0.25 0.91 16 26 H -0.01 -0.27 7.01 -51.93 -0.36 -0.64 16 27 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 28 H 0.10 2.17 5.43 -51.92 -0.28 1.89 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.34 3.68 9.08 -39.29 -0.36 3.32 16 31 H 0.34 3.78 7.60 -39.29 -0.30 3.48 16 32 H 0.06 0.74 6.76 -51.93 -0.35 0.38 16 33 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.11 2.24 7.28 -51.93 -0.38 1.86 16 37 H 0.06 1.17 7.86 -51.92 -0.41 0.76 16 LS Contribution 284.24 15.07 4.28 4.28 Total: -1.00 -28.89 284.24 -8.28 -37.18 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -5.91 Total: 6.24 kcal Atomic # 6 Polarization: -14.16 SS G_CDS: -1.30 Total: -15.46 kcal Atomic # 7 Polarization: -48.60 SS G_CDS: -0.34 Total: -48.93 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -28.89 -8.28 -37.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405225871.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.908 kcal (2) G-P(sol) polarization free energy of solvation -28.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds