Wall clock time and date at job start Mon Mar 30 2020 03:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.47841 * 111.00290 * 2 1 4 4 C 1.54905 * 104.79781 * 146.36084 * 3 2 1 5 5 C 1.55394 * 101.74344 * 323.01833 * 4 3 2 6 6 C 1.47445 * 110.99951 * 120.84329 * 2 1 3 7 7 H 1.08993 * 109.89339 * 117.17360 * 6 2 1 8 8 C 1.53007 * 109.88768 * 356.14521 * 6 2 1 9 9 N 1.46500 * 109.46959 * 175.32077 * 8 6 2 10 10 C 1.36932 * 119.99956 * 92.71286 * 9 8 6 11 11 H 1.08000 * 120.00421 * 334.85416 * 10 9 8 12 12 C 1.38812 * 120.00115 * 155.11960 * 10 9 8 13 13 N 1.31616 * 120.00138 * 348.59282 * 12 10 9 14 14 Si 1.86795 * 120.00253 * 168.58352 * 12 10 9 15 15 H 1.48499 * 109.47183 * 90.00312 * 14 12 10 16 16 H 1.48507 * 109.47544 * 210.00509 * 14 12 10 17 17 H 1.48507 * 109.47251 * 330.00600 * 14 12 10 18 18 C 1.46499 * 120.00048 * 272.71489 * 9 8 6 19 19 C 1.53000 * 117.49924 * 5.79654 * 18 9 8 20 20 C 1.52998 * 117.49800 * 297.13563 * 18 9 8 21 21 H 1.08997 * 109.47467 * 297.07137 * 1 2 3 22 22 H 1.09001 * 109.46911 * 57.06976 * 1 2 3 23 23 H 1.09000 * 109.47556 * 177.07127 * 1 2 3 24 24 H 1.08999 * 110.37555 * 265.19454 * 3 2 1 25 25 H 1.08997 * 110.37198 * 27.53481 * 3 2 1 26 26 H 1.08999 * 110.99206 * 81.02477 * 4 3 2 27 27 H 1.09006 * 110.99255 * 204.79965 * 4 3 2 28 28 H 1.09000 * 110.68254 * 277.17352 * 5 4 3 29 29 H 1.09004 * 110.84417 * 153.85543 * 5 4 3 30 30 H 1.08997 * 109.46855 * 55.32371 * 8 6 2 31 31 H 1.08997 * 109.47143 * 295.32199 * 8 6 2 32 32 H 0.97002 * 120.00484 * 185.02303 * 13 12 10 33 33 H 1.09000 * 115.55371 * 151.46857 * 18 9 8 34 34 H 1.08999 * 117.49779 * 0.02562 * 19 18 9 35 35 H 1.09002 * 117.49998 * 145.02530 * 19 18 9 36 36 H 1.08999 * 117.50346 * 214.98049 * 20 18 9 37 37 H 1.09004 * 117.49880 * 359.97438 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3802 0.0000 4 6 3.3047 1.3026 0.8297 5 6 2.9181 0.2789 1.9330 6 6 1.9973 -0.7057 1.1818 7 1 2.5672 -1.5801 0.8677 8 6 0.8436 -1.1356 2.0903 9 7 1.3685 -1.9315 3.2027 10 6 1.6991 -1.3228 4.3839 11 1 1.9671 -0.2767 4.3959 12 6 1.6950 -2.0517 5.5652 13 7 1.1633 -3.2554 5.5940 14 14 2.4443 -1.3245 7.1141 15 1 1.4033 -0.5760 7.8633 16 1 2.9779 -2.4174 7.9663 17 1 3.5476 -0.4018 6.7442 18 6 1.5397 -3.3785 3.0513 19 6 1.2824 -3.9794 1.6679 20 6 0.2838 -4.2164 2.8036 21 1 -0.3634 0.4677 0.9150 22 1 -0.3633 0.5587 -0.8626 23 1 -0.3634 -1.0263 -0.0525 24 1 2.2148 1.7038 -1.0182 25 1 1.2890 2.0592 0.4724 26 1 4.1302 0.9281 0.2244 27 1 3.5499 2.2721 1.2635 28 1 2.3782 0.7706 2.7422 29 1 3.8017 -0.2336 2.3133 30 1 0.1344 -1.7338 1.5184 31 1 0.3406 -0.2514 2.4818 32 1 1.0946 -3.7353 6.4342 33 1 2.3310 -3.8240 3.6542 34 1 0.9862 -3.2980 0.8704 35 1 1.9042 -4.8204 1.3609 36 1 0.2489 -5.2132 3.2432 37 1 -0.6700 -3.6910 2.7537 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593011164.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:02 Heat of formation + Delta-G solvation = 61.217039 kcal Electronic energy + Delta-G solvation = -16537.306802 eV Core-core repulsion = 14123.422305 eV Total energy + Delta-G solvation = -2413.884496 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.08899 -36.61191 -32.99640 -31.81601 -31.30463 -28.46062 -25.23505 -25.00714 -23.06917 -21.17559 -20.82908 -19.90034 -18.49043 -17.08071 -15.64488 -15.24015 -14.76265 -14.61046 -13.84994 -13.52533 -13.09924 -12.96496 -12.50618 -12.18755 -11.60909 -11.37774 -11.16517 -10.95232 -10.92746 -10.81468 -10.64035 -10.41520 -10.37972 -10.12052 -9.89435 -9.81796 -9.41375 -8.99839 -8.48397 -7.91065 -6.54902 -5.75606 -3.21229 3.35562 3.43144 3.43955 4.34441 4.51486 5.07302 5.17474 5.20289 5.37644 5.44332 5.49947 5.67787 5.75552 5.80057 5.91365 5.99903 6.10061 6.15048 6.22391 6.23910 6.32732 6.39355 6.52040 6.60346 6.62228 6.68503 6.78104 7.04346 7.08144 7.24877 7.42650 7.47781 7.56962 7.82307 8.38231 9.22648 9.83152 10.34451 11.30761 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.025560 B = 0.010580 C = 0.008202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.177388 B = 2645.850630 C = 3412.826149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.532 5.532 3 C 0.042 3.958 4 C -0.135 4.135 5 C -0.119 4.119 6 C 0.050 3.950 7 H 0.081 0.919 8 C 0.137 3.863 9 N -0.561 5.561 10 C -0.261 4.261 11 H 0.070 0.930 12 C 0.009 3.991 13 N -0.896 5.896 14 Si 0.900 3.100 15 H -0.288 1.288 16 H -0.290 1.290 17 H -0.279 1.279 18 C 0.209 3.791 19 C -0.247 4.247 20 C -0.194 4.194 21 H 0.032 0.968 22 H 0.055 0.945 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.040 0.960 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.045 0.955 31 H 0.046 0.954 32 H 0.254 0.746 33 H 0.104 0.896 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.018 5.358 -8.491 10.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.257 5.257 3 C -0.086 4.086 4 C -0.173 4.173 5 C -0.157 4.157 6 C -0.059 4.059 7 H 0.099 0.901 8 C 0.009 3.991 9 N -0.279 5.279 10 C -0.390 4.390 11 H 0.088 0.912 12 C -0.190 4.190 13 N -0.539 5.539 14 Si 0.730 3.270 15 H -0.215 1.215 16 H -0.216 1.216 17 H -0.205 1.205 18 C 0.100 3.900 19 C -0.286 4.286 20 C -0.235 4.235 21 H 0.051 0.949 22 H 0.074 0.926 23 H 0.088 0.912 24 H 0.089 0.911 25 H 0.059 0.941 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.122 0.878 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.218 4.983 -8.781 10.170 hybrid contribution -0.138 0.629 1.619 1.742 sum 1.080 5.612 -7.162 9.163 Atomic orbital electron populations 1.22512 0.88735 1.02042 0.99873 1.63762 1.07530 1.13494 1.40888 1.22999 0.95810 0.90227 0.99533 1.22794 0.97260 0.99492 0.97718 1.22746 1.00066 0.95998 0.96891 1.23189 0.97696 0.96676 0.88382 0.90118 1.21349 0.93160 0.94883 0.89702 1.43394 1.72650 1.01544 1.10307 1.19134 1.40697 0.95076 0.84121 0.91225 1.25075 0.99465 0.96901 0.97570 1.69981 1.46246 1.12550 1.25122 0.86333 0.79121 0.78088 0.83474 1.21507 1.21583 1.20464 1.20474 0.96120 0.82799 0.90600 1.23586 1.06531 1.04010 0.94475 1.22961 0.96361 1.01978 1.02182 0.94943 0.92591 0.91207 0.91148 0.94129 0.91368 0.91627 0.91210 0.90918 0.93737 0.93539 0.93588 0.87842 0.90187 0.90757 0.90881 0.91101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 8.25 60.06 0.50 0.75 16 2 N -0.53 -8.62 5.44 -231.57 -1.26 -9.88 16 3 C 0.04 0.60 6.73 -2.30 -0.02 0.58 16 4 C -0.13 -1.93 7.08 -24.46 -0.17 -2.10 16 5 C -0.12 -2.10 5.61 -24.77 -0.14 -2.24 16 6 C 0.05 0.93 3.49 -66.72 -0.23 0.69 16 7 H 0.08 1.61 7.68 -51.93 -0.40 1.22 16 8 C 0.14 2.82 3.10 -4.04 -0.01 2.81 16 9 N -0.56 -13.60 2.77 -165.66 -0.46 -14.06 16 10 C -0.26 -6.88 8.99 -15.06 -0.14 -7.02 16 11 H 0.07 1.80 6.36 -52.49 -0.33 1.46 16 12 C 0.01 0.25 5.18 -17.43 -0.09 0.16 16 13 N -0.90 -25.26 10.88 55.49 0.60 -24.66 16 14 Si 0.90 21.34 29.57 -169.99 -5.03 16.31 16 15 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 16 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 18 C 0.21 5.00 4.50 -67.93 -0.31 4.70 16 19 C -0.25 -5.03 9.46 -26.69 -0.25 -5.28 16 20 C -0.19 -4.37 9.99 -26.69 -0.27 -4.64 16 21 H 0.03 0.50 6.51 -51.93 -0.34 0.16 16 22 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.07 1.05 6.75 -51.93 -0.35 0.70 16 24 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.04 0.56 7.81 -51.93 -0.41 0.16 16 26 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 27 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.07 1.33 6.42 -51.93 -0.33 1.00 16 29 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 30 H 0.04 0.91 4.62 -51.93 -0.24 0.67 16 31 H 0.05 0.99 6.75 -51.93 -0.35 0.64 16 32 H 0.25 7.00 8.32 -40.82 -0.34 6.66 16 33 H 0.10 2.73 7.32 -51.93 -0.38 2.35 16 34 H 0.08 1.58 6.07 -51.93 -0.32 1.27 16 35 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 37 H 0.07 1.65 8.14 -51.93 -0.42 1.23 16 LS Contribution 282.12 15.07 4.25 4.25 Total: -1.00 -27.46 282.12 -8.98 -36.44 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -5.96 Total: 3.18 kcal Atomic # 6 Polarization: -10.46 SS G_CDS: -1.13 Total: -11.59 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: -1.11 Total: -48.60 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -27.46 -8.98 -36.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593011164.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.661 kcal (2) G-P(sol) polarization free energy of solvation -27.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds