Wall clock time and date at job start Mon Mar 30 2020 02:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.46931 * 2 1 4 4 C 1.50698 * 109.47770 * 239.99908 * 2 1 3 5 5 H 1.07998 * 119.99974 * 240.00590 * 4 2 1 6 6 C 1.37880 * 119.99548 * 59.99072 * 4 2 1 7 7 N 1.31513 * 120.00295 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 119.99570 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47481 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.46804 * 120.00708 * 8 6 4 11 11 H 1.48505 * 109.46858 * 240.00263 * 8 6 4 12 12 N 1.46908 * 109.47238 * 119.99559 * 2 1 3 13 13 C 1.46895 * 111.00118 * 274.99999 * 12 2 1 14 14 C 1.52995 * 109.47167 * 179.97438 * 13 12 2 15 15 H 1.09004 * 112.78687 * 75.81457 * 14 13 12 16 16 C 1.53633 * 113.51708 * 206.57796 * 14 13 12 17 17 C 1.53517 * 83.53579 * 140.75795 * 16 14 13 18 18 N 1.47479 * 87.99753 * 334.02425 * 17 16 14 19 19 C 1.46897 * 110.99965 * 138.66774 * 18 17 16 20 20 C 1.53006 * 117.49961 * 150.27249 * 19 18 17 21 21 C 1.53009 * 117.49595 * 81.61660 * 19 18 17 22 22 H 1.09003 * 109.47269 * 300.00055 * 1 2 3 23 23 H 1.09000 * 109.47494 * 60.00028 * 1 2 3 24 24 H 1.09004 * 109.46931 * 180.02562 * 1 2 3 25 25 H 0.96996 * 119.99713 * 179.97438 * 7 6 4 26 26 H 1.00902 * 110.99727 * 151.04644 * 12 2 1 27 27 H 1.09004 * 109.46808 * 60.00108 * 13 12 2 28 28 H 1.08997 * 109.47314 * 300.00208 * 13 12 2 29 29 H 1.09000 * 114.17137 * 27.13207 * 16 14 13 30 30 H 1.09000 * 114.20704 * 254.38795 * 16 14 13 31 31 H 1.09002 * 113.47888 * 219.22784 * 17 16 14 32 32 H 1.09003 * 113.47419 * 88.82117 * 17 16 14 33 33 H 1.08997 * 115.55627 * 295.94832 * 19 18 17 34 34 H 1.09002 * 117.49453 * 0.02562 * 20 19 18 35 35 H 1.08998 * 117.50103 * 145.02265 * 20 19 18 36 36 H 1.09000 * 117.49601 * 214.97579 * 21 19 18 37 37 H 1.08999 * 117.49758 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6992 -0.2394 -2.4827 7 7 0.9433 0.8300 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 3.1458 -2.2876 -3.6037 10 1 1.1662 -1.5868 -4.8160 11 1 3.1467 -0.1873 -4.8164 12 7 2.0196 -0.6924 1.1995 13 6 2.0825 0.2227 2.3469 14 6 2.5950 -0.5330 3.5745 15 1 3.6697 -0.7123 3.5416 16 6 2.1163 0.0647 4.9063 17 6 1.9829 -1.4077 5.3198 18 7 1.8077 -1.7387 3.8933 19 6 2.5469 -2.9583 3.5413 20 6 1.9847 -3.8239 2.4118 21 6 1.8881 -4.3013 3.8630 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 0.7093 1.1615 -3.4844 26 1 2.9173 -1.1204 1.0288 27 1 1.0870 0.6164 2.5525 28 1 2.7588 1.0463 2.1182 29 1 1.1676 0.5976 4.8410 30 1 2.8841 0.6136 5.4516 31 1 1.0989 -1.6107 5.9244 32 1 2.8937 -1.8213 5.7529 33 1 3.6310 -2.8945 3.6344 34 1 1.0665 -3.4881 1.9298 35 1 2.6989 -4.3298 1.7622 36 1 2.5389 -5.1210 4.1674 37 1 0.9064 -4.2797 4.3363 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691660287.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:42 Heat of formation + Delta-G solvation = 42.266839 kcal Electronic energy + Delta-G solvation = -15897.043083 eV Core-core repulsion = 13482.336845 eV Total energy + Delta-G solvation = -2414.706238 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.11742 -37.55066 -36.79373 -34.40688 -31.10245 -28.93502 -27.70706 -27.04723 -23.70220 -22.87745 -21.99633 -21.60820 -20.61458 -18.53029 -17.51140 -16.83366 -16.23111 -15.86280 -15.63258 -15.34385 -14.65489 -14.28609 -14.09052 -13.84323 -13.46698 -12.91913 -12.66067 -12.58250 -12.42311 -12.33500 -12.25701 -12.18472 -12.04491 -11.89618 -11.29702 -11.03580 -10.83463 -10.75675 -10.56272 -9.60765 -8.88238 -8.12402 -6.26196 1.40066 1.41896 1.53698 2.41388 2.95433 3.02783 3.16077 3.56064 3.74427 4.03838 4.15157 4.16753 4.23482 4.40694 4.45895 4.63234 4.66783 4.79747 4.83428 4.86210 4.97607 5.01843 5.07182 5.10810 5.21176 5.26215 5.34443 5.45052 5.47350 5.54025 5.69885 5.88635 6.24196 6.38286 6.53646 6.84760 7.06592 7.44373 8.93662 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.033170 B = 0.007163 C = 0.006315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.930641 B = 3907.922128 C = 4432.489861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.217 3.783 3 H -0.037 1.037 4 C -0.531 4.531 5 H 0.058 0.942 6 C 0.011 3.989 7 N -0.920 5.920 8 Si 0.962 3.038 9 H -0.266 1.266 10 H -0.281 1.281 11 H -0.280 1.280 12 N -0.664 5.664 13 C 0.079 3.921 14 C 0.036 3.964 15 H 0.078 0.922 16 C -0.131 4.131 17 C 0.003 3.997 18 N -0.444 5.444 19 C -0.026 4.026 20 C -0.158 4.158 21 C -0.155 4.155 22 H 0.016 0.984 23 H 0.054 0.946 24 H 0.023 0.977 25 H 0.262 0.738 26 H 0.325 0.675 27 H 0.054 0.946 28 H 0.013 0.987 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.111 0.889 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.407 -5.386 14.714 16.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.108 3.892 3 H -0.019 1.019 4 C -0.570 4.570 5 H 0.076 0.924 6 C -0.188 4.188 7 N -0.560 5.560 8 Si 0.788 3.212 9 H -0.191 1.191 10 H -0.207 1.207 11 H -0.206 1.206 12 N -0.294 5.294 13 C -0.051 4.051 14 C -0.074 4.074 15 H 0.096 0.904 16 C -0.169 4.169 17 C -0.125 4.125 18 N -0.167 5.167 19 C -0.136 4.136 20 C -0.195 4.195 21 C -0.193 4.193 22 H 0.035 0.965 23 H 0.073 0.927 24 H 0.042 0.958 25 H 0.071 0.929 26 H 0.141 0.859 27 H 0.073 0.927 28 H 0.031 0.969 29 H 0.105 0.895 30 H 0.115 0.885 31 H 0.105 0.895 32 H 0.097 0.903 33 H 0.108 0.892 34 H 0.094 0.906 35 H 0.110 0.890 36 H 0.130 0.870 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.037 -5.656 14.453 15.815 hybrid contribution 1.628 0.469 -1.200 2.075 sum 4.664 -5.188 13.254 14.977 Atomic orbital electron populations 1.21466 0.98051 0.98416 0.98504 1.18888 0.92493 0.90453 0.87328 1.01934 1.21602 1.31318 1.12438 0.91602 0.92407 1.25748 0.95240 0.95702 1.02070 1.70041 1.37703 1.24215 1.24016 0.85447 0.78100 0.78607 0.79093 1.19054 1.20655 1.20568 1.60539 1.31467 1.32826 1.04584 1.21863 0.99004 0.93205 0.91008 1.23441 0.96590 0.92394 0.94947 0.90411 1.23211 1.02540 0.96594 0.94553 1.23690 1.02166 0.95058 0.91564 1.68786 1.40758 0.99619 1.07499 1.22995 0.95261 0.89646 1.05657 1.22742 1.02877 1.02475 0.91446 1.23011 1.02264 0.95762 0.98240 0.96515 0.92708 0.95780 0.92910 0.85876 0.92746 0.96894 0.89474 0.88549 0.89542 0.90269 0.89152 0.90601 0.89015 0.87028 0.89090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.61 9.19 71.98 0.66 -4.95 16 2 C 0.22 11.52 2.60 44.16 0.11 11.63 16 3 H -0.04 -2.16 7.80 -2.38 -0.02 -2.18 16 4 C -0.53 -29.97 8.59 25.60 0.22 -29.75 16 5 H 0.06 3.20 7.62 -2.91 -0.02 3.18 16 6 C 0.01 0.63 5.30 84.66 0.45 1.08 16 7 N -0.92 -54.41 11.32 21.45 0.24 -54.17 16 8 Si 0.96 44.36 29.54 68.60 2.03 46.39 16 9 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 10 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 11 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 12 N -0.66 -29.15 6.17 -495.46 -3.06 -32.21 16 13 C 0.08 2.95 5.62 86.30 0.49 3.44 16 14 C 0.04 1.03 3.32 42.23 0.14 1.17 16 15 H 0.08 2.07 7.67 -2.39 -0.02 2.05 16 16 C -0.13 -2.86 8.01 30.98 0.25 -2.61 16 17 C 0.00 0.07 7.71 83.58 0.64 0.72 16 18 N -0.44 -12.83 6.23 -876.14 -5.46 -18.29 16 19 C -0.03 -0.71 4.85 44.92 0.22 -0.49 16 20 C -0.16 -4.75 10.46 30.62 0.32 -4.43 16 21 C -0.16 -3.68 10.46 30.62 0.32 -3.36 16 22 H 0.02 0.79 7.45 -2.39 -0.02 0.77 16 23 H 0.05 3.14 6.07 -2.39 -0.01 3.13 16 24 H 0.02 1.25 8.14 -2.38 -0.02 1.23 16 25 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 26 H 0.32 14.10 8.22 -89.69 -0.74 13.37 16 27 H 0.05 2.15 7.17 -2.38 -0.02 2.13 16 28 H 0.01 0.49 8.05 -2.39 -0.02 0.47 16 29 H 0.09 2.03 7.94 -2.39 -0.02 2.01 16 30 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.08 1.44 7.91 -2.39 -0.02 1.42 16 33 H 0.09 2.26 7.77 -2.39 -0.02 2.24 16 34 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 35 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 36 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -62.12 299.70 -2.13 -64.25 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: 0.29 Total: 21.59 kcal Atomic # 6 Polarization: -31.38 SS G_CDS: 3.82 Total: -27.56 kcal Atomic # 7 Polarization: -96.39 SS G_CDS: -8.27 Total: -104.66 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -62.12 -2.13 -64.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691660287.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.519 kcal (2) G-P(sol) polarization free energy of solvation -62.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds