Wall clock time and date at job start Mon Mar 30 2020 02:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 C 1.50699 * 109.47053 * 175.00035 * 4 2 1 6 6 H 1.08006 * 120.00127 * 359.97438 * 5 4 2 7 7 C 1.37874 * 119.99929 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00323 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00031 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47223 * 90.00091 * 9 7 5 11 11 H 1.48502 * 109.46796 * 210.00133 * 9 7 5 12 12 H 1.48502 * 109.47239 * 329.99785 * 9 7 5 13 13 N 1.46894 * 109.47515 * 120.00133 * 2 1 3 14 14 C 1.46899 * 111.00313 * 275.00230 * 13 2 1 15 15 C 1.52998 * 109.47303 * 179.97438 * 14 13 2 16 16 N 1.46902 * 109.47056 * 179.97438 * 15 14 13 17 17 C 1.48230 * 110.99945 * 56.36435 * 16 15 14 18 18 C 1.51110 * 105.36203 * 144.89713 * 17 16 15 19 19 C 1.30967 * 109.45712 * 343.02303 * 18 17 16 20 20 C 1.48230 * 110.99924 * 169.99842 * 16 15 14 21 21 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 24 24 H 1.08995 * 109.46750 * 294.99553 * 4 2 1 25 25 H 1.09001 * 109.47326 * 54.99931 * 4 2 1 26 26 H 0.97000 * 120.00334 * 179.97438 * 8 7 5 27 27 H 1.00902 * 111.00328 * 151.04219 * 13 2 1 28 28 H 1.09003 * 109.46741 * 300.00007 * 14 13 2 29 29 H 1.09003 * 109.47153 * 59.99606 * 14 13 2 30 30 H 1.08993 * 109.47479 * 299.99883 * 15 14 13 31 31 H 1.09003 * 109.46991 * 59.99931 * 15 14 13 32 32 H 1.08999 * 110.26671 * 263.87387 * 17 16 15 33 33 H 1.09008 * 110.26332 * 25.92606 * 17 16 15 34 34 H 1.08004 * 125.27698 * 163.00616 * 18 17 16 35 35 H 1.08003 * 125.26763 * 179.97438 * 19 18 17 36 36 H 1.09002 * 110.26688 * 334.07831 * 20 16 15 37 37 H 1.09002 * 110.26463 * 96.04119 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.5419 -0.6148 -1.3128 6 1 4.0789 -0.0854 -0.5396 7 6 4.2304 -1.1933 -2.3579 8 7 3.5765 -1.8376 -3.2997 9 14 6.0920 -1.0609 -2.4369 10 1 6.7009 -2.2129 -1.7247 11 1 6.5290 -1.0694 -3.8562 12 1 6.5261 0.2048 -1.7929 13 7 2.0197 -0.6925 1.1993 14 6 2.0825 0.2225 2.3469 15 6 2.5952 -0.5333 3.5744 16 7 2.6585 0.3819 4.7217 17 6 1.3384 1.0058 4.9771 18 6 1.2458 1.1462 6.4788 19 6 2.1396 0.3744 7.0451 20 6 2.9193 -0.3593 5.9787 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 1.7517 -1.7714 -1.2057 25 1 1.6054 -0.2616 -2.1371 26 1 4.0608 -2.2443 -4.0351 27 1 2.9173 -1.1205 1.0286 28 1 2.7589 1.0462 2.1181 29 1 1.0871 0.6162 2.5525 30 1 1.9186 -1.3567 3.8029 31 1 3.5905 -0.9273 3.3689 32 1 1.2856 1.9855 4.5022 33 1 0.5392 0.3628 4.6080 34 1 0.5505 1.7844 7.0039 35 1 2.2955 0.2777 8.1094 36 1 2.5653 -1.3866 5.8916 37 1 3.9841 -0.3458 6.2110 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695811412.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:22 Heat of formation + Delta-G solvation = 21.512063 kcal Electronic energy + Delta-G solvation = -15304.326778 eV Core-core repulsion = 12888.720545 eV Total energy + Delta-G solvation = -2415.606233 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.53235 -36.66942 -33.55737 -32.33685 -30.19846 -28.49275 -27.38061 -26.25579 -23.25983 -22.30610 -20.75365 -19.36502 -19.22182 -16.49384 -16.33242 -15.91762 -14.83270 -14.50694 -14.42310 -13.93935 -13.24017 -12.90160 -12.80999 -12.49188 -12.12514 -11.82215 -11.78789 -11.47380 -11.36735 -11.20815 -11.03485 -10.69283 -10.56307 -10.45299 -10.16596 -9.58675 -9.22027 -9.05803 -8.38971 -8.33394 -7.65042 -6.01913 -4.05092 2.00798 3.30841 3.37554 3.40702 3.90910 4.44318 4.55002 4.61760 5.08487 5.24725 5.27895 5.37252 5.40546 5.44514 5.49073 5.57528 5.80756 5.81271 5.98642 6.14407 6.18333 6.22070 6.28650 6.34143 6.50166 6.54905 6.80956 6.93273 6.95197 6.99370 7.52993 7.64737 7.97401 8.06299 8.27634 8.38475 9.01126 9.59276 11.08987 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.033917 B = 0.005535 C = 0.004908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.355976 B = 5057.685810 C = 5703.367764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.088 3.912 3 H 0.029 0.971 4 C 0.020 3.980 5 C -0.524 4.524 6 H 0.052 0.948 7 C 0.061 3.939 8 N -0.892 5.892 9 Si 0.890 3.110 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.684 5.684 14 C 0.061 3.939 15 C 0.046 3.954 16 N -0.504 5.504 17 C 0.049 3.951 18 C -0.168 4.168 19 C -0.172 4.172 20 C 0.052 3.948 21 H 0.035 0.965 22 H 0.054 0.946 23 H 0.048 0.952 24 H 0.026 0.974 25 H 0.021 0.979 26 H 0.261 0.739 27 H 0.354 0.646 28 H 0.032 0.968 29 H 0.062 0.938 30 H 0.045 0.955 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.061 0.939 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.058 0.942 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.093 3.793 16.839 17.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.021 4.021 3 H 0.048 0.952 4 C -0.017 4.017 5 C -0.562 4.562 6 H 0.070 0.930 7 C -0.141 4.141 8 N -0.530 5.530 9 Si 0.718 3.282 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.200 1.200 13 N -0.319 5.319 14 C -0.069 4.069 15 C -0.083 4.083 16 N -0.228 5.228 17 C -0.078 4.078 18 C -0.187 4.187 19 C -0.191 4.191 20 C -0.076 4.076 21 H 0.054 0.946 22 H 0.073 0.927 23 H 0.067 0.933 24 H 0.044 0.956 25 H 0.040 0.960 26 H 0.070 0.930 27 H 0.175 0.825 28 H 0.050 0.950 29 H 0.080 0.920 30 H 0.063 0.937 31 H 0.097 0.903 32 H 0.104 0.896 33 H 0.079 0.921 34 H 0.151 0.849 35 H 0.151 0.849 36 H 0.076 0.924 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.244 3.832 16.662 17.616 hybrid contribution 1.196 -0.022 -0.161 1.207 sum -3.048 3.811 16.501 17.207 Atomic orbital electron populations 1.21794 0.96789 1.01258 0.99432 1.21601 0.93275 0.95931 0.91292 0.95247 1.19284 0.95448 0.96176 0.90801 1.21182 0.92219 1.34458 1.08375 0.92981 1.24985 0.98258 0.95174 0.95661 1.69962 1.35501 1.35632 1.11953 0.86634 0.85938 0.78454 0.77221 1.20597 1.21228 1.19964 1.60531 1.34737 1.32134 1.04476 1.21906 0.99677 0.94573 0.90759 1.22367 1.01655 0.93889 0.90339 1.65657 1.26719 1.27846 1.02595 1.22111 0.91350 1.00811 0.93535 1.23623 0.99401 0.99690 0.95947 1.23563 0.97856 0.98469 0.99173 1.22090 1.00871 0.96157 0.88491 0.94626 0.92688 0.93281 0.95602 0.96030 0.92954 0.82482 0.94977 0.91951 0.93653 0.90301 0.89636 0.92104 0.84930 0.84946 0.92441 0.89696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.46 9.41 37.16 0.35 -2.11 16 2 C 0.09 1.87 2.59 -67.71 -0.18 1.69 16 3 H 0.03 0.64 7.80 -51.93 -0.40 0.24 16 4 C 0.02 0.52 4.57 -27.88 -0.13 0.39 16 5 C -0.52 -14.50 8.12 -34.44 -0.28 -14.78 16 6 H 0.05 1.41 7.49 -52.48 -0.39 1.01 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 9 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 13 N -0.68 -13.33 6.31 -106.73 -0.67 -14.00 16 14 C 0.06 1.01 5.31 -3.83 -0.02 0.99 16 15 C 0.05 0.66 5.10 -3.82 -0.02 0.65 16 16 N -0.50 -6.76 5.67 -234.68 -1.33 -8.09 16 17 C 0.05 0.59 5.32 -4.04 -0.02 0.57 16 18 C -0.17 -1.69 10.95 -35.82 -0.39 -2.08 16 19 C -0.17 -1.69 10.95 -35.82 -0.39 -2.08 16 20 C 0.05 0.58 6.66 -4.04 -0.03 0.55 16 21 H 0.03 0.58 7.45 -51.93 -0.39 0.19 16 22 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 23 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 24 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 27 H 0.35 7.46 7.21 -39.29 -0.28 7.17 16 28 H 0.03 0.57 8.06 -51.93 -0.42 0.15 16 29 H 0.06 0.98 6.12 -51.93 -0.32 0.66 16 30 H 0.05 0.66 7.83 -51.93 -0.41 0.25 16 31 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.06 0.74 7.36 -51.92 -0.38 0.36 16 34 H 0.13 1.04 8.06 -52.48 -0.42 0.61 16 35 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 36 H 0.06 0.63 7.59 -51.93 -0.39 0.24 16 37 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 298.89 15.07 4.50 4.50 Total: -1.00 -29.36 298.89 -9.31 -38.67 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -6.33 Total: 2.84 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: -1.20 Total: -14.58 kcal Atomic # 7 Polarization: -46.68 SS G_CDS: -1.27 Total: -47.95 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.36 -9.31 -38.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695811412.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.182 kcal (2) G-P(sol) polarization free energy of solvation -29.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds