Wall clock time and date at job start Mon Mar 30 2020 02:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 C 1.50699 * 109.47053 * 175.00035 * 4 2 1 6 6 H 1.08006 * 120.00127 * 359.97438 * 5 4 2 7 7 C 1.37874 * 119.99929 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00323 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00031 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47223 * 90.00091 * 9 7 5 11 11 H 1.48502 * 109.46796 * 210.00133 * 9 7 5 12 12 H 1.48502 * 109.47239 * 329.99785 * 9 7 5 13 13 N 1.46894 * 109.47515 * 120.00133 * 2 1 3 14 14 C 1.46899 * 111.00313 * 275.00230 * 13 2 1 15 15 C 1.52998 * 109.47303 * 179.97438 * 14 13 2 16 16 N 1.46902 * 109.47056 * 179.97438 * 15 14 13 17 17 C 1.48230 * 110.99945 * 56.36435 * 16 15 14 18 18 C 1.51110 * 105.36203 * 144.89713 * 17 16 15 19 19 C 1.30967 * 109.45712 * 343.02303 * 18 17 16 20 20 C 1.48230 * 110.99924 * 169.99842 * 16 15 14 21 21 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 24 24 H 1.08995 * 109.46750 * 294.99553 * 4 2 1 25 25 H 1.09001 * 109.47326 * 54.99931 * 4 2 1 26 26 H 0.97000 * 120.00334 * 179.97438 * 8 7 5 27 27 H 1.00902 * 111.00328 * 151.04219 * 13 2 1 28 28 H 1.09003 * 109.46741 * 300.00007 * 14 13 2 29 29 H 1.09003 * 109.47153 * 59.99606 * 14 13 2 30 30 H 1.08993 * 109.47479 * 299.99883 * 15 14 13 31 31 H 1.09003 * 109.46991 * 59.99931 * 15 14 13 32 32 H 1.08999 * 110.26671 * 263.87387 * 17 16 15 33 33 H 1.09008 * 110.26332 * 25.92606 * 17 16 15 34 34 H 1.08004 * 125.27698 * 163.00616 * 18 17 16 35 35 H 1.08003 * 125.26763 * 179.97438 * 19 18 17 36 36 H 1.09002 * 110.26688 * 334.07831 * 20 16 15 37 37 H 1.09002 * 110.26463 * 96.04119 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.5419 -0.6148 -1.3128 6 1 4.0789 -0.0854 -0.5396 7 6 4.2304 -1.1933 -2.3579 8 7 3.5765 -1.8376 -3.2997 9 14 6.0920 -1.0609 -2.4369 10 1 6.7009 -2.2129 -1.7247 11 1 6.5290 -1.0694 -3.8562 12 1 6.5261 0.2048 -1.7929 13 7 2.0197 -0.6925 1.1993 14 6 2.0825 0.2225 2.3469 15 6 2.5952 -0.5333 3.5744 16 7 2.6585 0.3819 4.7217 17 6 1.3384 1.0058 4.9771 18 6 1.2458 1.1462 6.4788 19 6 2.1396 0.3744 7.0451 20 6 2.9193 -0.3593 5.9787 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 1.7517 -1.7714 -1.2057 25 1 1.6054 -0.2616 -2.1371 26 1 4.0608 -2.2443 -4.0351 27 1 2.9173 -1.1205 1.0286 28 1 2.7589 1.0462 2.1181 29 1 1.0871 0.6162 2.5525 30 1 1.9186 -1.3567 3.8029 31 1 3.5905 -0.9273 3.3689 32 1 1.2856 1.9855 4.5022 33 1 0.5392 0.3628 4.6080 34 1 0.5505 1.7844 7.0039 35 1 2.2955 0.2777 8.1094 36 1 2.5653 -1.3866 5.8916 37 1 3.9841 -0.3458 6.2110 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695811412.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:22 Heat of formation + Delta-G solvation = 1.111805 kcal Electronic energy + Delta-G solvation = -15305.211400 eV Core-core repulsion = 12888.720545 eV Total energy + Delta-G solvation = -2416.490855 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.47922 -38.28225 -35.18054 -34.01884 -31.60539 -29.38833 -29.30997 -27.52273 -25.13143 -23.59831 -21.84852 -21.08385 -20.06515 -18.52450 -17.40955 -17.19783 -16.55964 -15.99712 -15.89478 -15.20935 -14.65871 -14.35942 -13.91383 -13.70654 -13.46881 -13.33442 -13.12911 -13.04013 -13.01764 -12.61973 -12.36135 -12.34500 -12.18642 -12.08687 -11.77456 -11.23639 -11.01676 -10.58141 -10.44927 -9.29212 -9.23358 -8.20031 -6.30783 1.26584 1.39948 1.40239 1.51019 2.40038 2.83230 3.13285 3.56431 3.77781 3.82968 4.08209 4.18233 4.29525 4.49270 4.52383 4.56394 4.59340 4.62383 4.69986 4.71582 4.89132 4.91799 5.02517 5.06432 5.19418 5.31968 5.44919 5.47789 5.52913 5.62330 5.82990 5.93241 5.98572 6.20100 6.36397 6.59866 6.84180 7.38224 8.91600 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.033917 B = 0.005535 C = 0.004908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.355976 B = 5057.685810 C = 5703.367764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.096 3.904 3 H 0.023 0.977 4 C 0.027 3.973 5 C -0.536 4.536 6 H 0.055 0.945 7 C 0.006 3.994 8 N -0.930 5.930 9 Si 0.960 3.040 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.267 1.267 13 N -0.684 5.684 14 C 0.068 3.932 15 C 0.057 3.943 16 N -0.520 5.520 17 C 0.044 3.956 18 C -0.173 4.173 19 C -0.170 4.170 20 C 0.045 3.955 21 H 0.060 0.940 22 H 0.050 0.950 23 H 0.054 0.946 24 H -0.001 1.001 25 H -0.004 1.004 26 H 0.263 0.737 27 H 0.343 0.657 28 H 0.019 0.981 29 H 0.074 0.926 30 H 0.046 0.954 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.057 0.943 34 H 0.157 0.843 35 H 0.159 0.841 36 H 0.059 0.941 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.749 4.444 18.753 19.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.014 4.014 3 H 0.041 0.959 4 C -0.010 4.010 5 C -0.574 4.574 6 H 0.074 0.926 7 C -0.192 4.192 8 N -0.570 5.570 9 Si 0.785 3.215 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.192 1.192 13 N -0.317 5.317 14 C -0.062 4.062 15 C -0.072 4.072 16 N -0.244 5.244 17 C -0.084 4.084 18 C -0.191 4.191 19 C -0.188 4.188 20 C -0.082 4.082 21 H 0.079 0.921 22 H 0.069 0.931 23 H 0.073 0.927 24 H 0.017 0.983 25 H 0.015 0.985 26 H 0.072 0.928 27 H 0.163 0.837 28 H 0.037 0.963 29 H 0.092 0.908 30 H 0.064 0.936 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.075 0.925 34 H 0.175 0.825 35 H 0.177 0.823 36 H 0.077 0.923 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.912 4.493 18.599 19.530 hybrid contribution 1.066 -0.218 -0.745 1.318 sum -2.847 4.275 17.854 18.578 Atomic orbital electron populations 1.21707 0.94331 1.01494 1.00961 1.21431 0.95219 0.94729 0.90032 0.95935 1.19141 0.94869 0.94798 0.92202 1.21510 0.93279 1.34202 1.08417 0.92645 1.25874 1.03348 0.94746 0.95259 1.70089 1.37561 1.36637 1.12688 0.85518 0.79797 0.78817 0.77328 1.19659 1.20873 1.19195 1.60573 1.33975 1.32622 1.04578 1.21896 1.00128 0.93788 0.90341 1.22167 1.01074 0.93797 0.90136 1.65632 1.27820 1.27938 1.03043 1.22171 0.90472 1.00427 0.95294 1.23780 1.00221 1.00440 0.94665 1.23768 0.97192 0.97826 1.00059 1.22193 1.01557 0.96361 0.88116 0.92112 0.93087 0.92739 0.98270 0.98549 0.92772 0.83743 0.96252 0.90811 0.93593 0.90994 0.89868 0.92454 0.82546 0.82338 0.92258 0.89278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.52 9.41 71.98 0.68 -3.84 16 2 C 0.10 4.05 2.59 44.92 0.12 4.17 16 3 H 0.02 0.99 7.80 -2.39 -0.02 0.97 16 4 C 0.03 1.44 4.57 29.85 0.14 1.58 16 5 C -0.54 -30.05 8.12 25.60 0.21 -29.84 16 6 H 0.06 3.01 7.49 -2.91 -0.02 2.98 16 7 C 0.01 0.34 5.46 84.65 0.46 0.81 16 8 N -0.93 -56.40 13.29 21.45 0.28 -56.11 16 9 Si 0.96 44.27 29.54 68.60 2.03 46.30 16 10 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 11 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 12 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 13 N -0.68 -26.55 6.31 -491.58 -3.10 -29.65 16 14 C 0.07 2.19 5.31 86.30 0.46 2.65 16 15 C 0.06 1.60 5.10 86.30 0.44 2.05 16 16 N -0.52 -13.26 5.67 -896.40 -5.08 -18.34 16 17 C 0.04 0.97 5.32 85.43 0.45 1.42 16 18 C -0.17 -3.02 10.95 25.81 0.28 -2.73 16 19 C -0.17 -2.87 10.95 25.81 0.28 -2.59 16 20 C 0.04 0.94 6.66 85.43 0.57 1.50 16 21 H 0.06 1.85 7.45 -2.39 -0.02 1.83 16 22 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 23 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 24 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 25 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 26 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 27 H 0.34 14.59 7.21 -89.69 -0.65 13.94 16 28 H 0.02 0.68 8.06 -2.39 -0.02 0.66 16 29 H 0.07 2.21 6.12 -2.39 -0.01 2.19 16 30 H 0.05 1.28 7.83 -2.39 -0.02 1.26 16 31 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.08 1.84 8.14 -2.39 -0.02 1.83 16 33 H 0.06 1.30 7.36 -2.38 -0.02 1.28 16 34 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 35 H 0.16 1.81 8.06 -2.91 -0.02 1.79 16 36 H 0.06 1.21 7.59 -2.39 -0.02 1.19 16 37 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -62.64 298.89 -1.41 -64.05 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: 0.37 Total: 18.58 kcal Atomic # 6 Polarization: -28.92 SS G_CDS: 4.09 Total: -24.83 kcal Atomic # 7 Polarization: -96.20 SS G_CDS: -7.90 Total: -104.10 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -62.64 -1.41 -64.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695811412.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.158 kcal (2) G-P(sol) polarization free energy of solvation -62.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds