Wall clock time and date at job start Mon Mar 30 2020 03:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50702 * 119.99994 * 2 1 4 4 C 1.53001 * 109.47259 * 124.99881 * 3 2 1 5 5 N 1.46897 * 109.47188 * 179.97438 * 4 3 2 6 6 C 1.46897 * 111.00059 * 187.28487 * 5 4 3 7 7 N 1.45405 * 111.00085 * 63.32904 * 5 4 3 8 8 C 1.46897 * 111.00128 * 191.37513 * 7 5 4 9 9 C 1.50703 * 109.46880 * 65.00463 * 8 7 5 10 10 H 1.08003 * 119.99779 * 359.97438 * 9 8 7 11 11 C 1.37882 * 119.99919 * 180.02562 * 9 8 7 12 12 N 1.31506 * 119.99893 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99728 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.46852 * 89.99902 * 13 11 9 15 15 H 1.48497 * 109.46947 * 209.99566 * 13 11 9 16 16 H 1.48495 * 109.47261 * 329.99580 * 13 11 9 17 17 C 1.46902 * 110.99397 * 67.42434 * 7 5 4 18 18 C 1.52992 * 117.50348 * 357.93550 * 17 7 5 19 19 C 1.52997 * 117.49947 * 289.26960 * 17 7 5 20 20 H 1.08004 * 119.99920 * 180.02562 * 1 2 3 21 21 H 1.07995 * 120.00059 * 359.97438 * 1 2 3 22 22 H 1.08001 * 120.00363 * 179.97438 * 2 1 3 23 23 H 1.09005 * 109.46787 * 4.99895 * 3 2 1 24 24 H 1.08994 * 109.47140 * 244.99937 * 3 2 1 25 25 H 1.09003 * 109.46969 * 300.00289 * 4 3 2 26 26 H 1.08998 * 109.46845 * 59.99699 * 4 3 2 27 27 H 1.09002 * 109.46831 * 28.84964 * 6 5 4 28 28 H 1.08999 * 109.47285 * 148.85067 * 6 5 4 29 29 H 1.09004 * 109.47105 * 268.84944 * 6 5 4 30 30 H 1.08992 * 109.47183 * 184.99770 * 8 7 5 31 31 H 1.09001 * 109.47198 * 305.00606 * 8 7 5 32 32 H 0.97002 * 119.99832 * 180.02562 * 12 11 9 33 33 H 1.08998 * 115.54825 * 143.60910 * 17 7 5 34 34 H 1.09004 * 117.50259 * 0.02562 * 18 17 7 35 35 H 1.09000 * 117.50289 * 145.01876 * 18 17 7 36 36 H 1.08995 * 117.50274 * 214.98409 * 19 17 7 37 37 H 1.09002 * 117.50191 * 359.97438 * 19 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 7 3.7699 2.6051 1.1813 6 6 4.8322 2.5996 2.1959 7 7 2.8677 3.7283 1.3775 8 6 3.5478 5.0027 1.1109 9 6 3.9312 5.0725 -0.3448 10 1 3.6937 4.2520 -1.0057 11 6 4.5861 6.1835 -0.8328 12 7 4.8756 7.1824 -0.0279 13 14 5.0619 6.2697 -2.6371 14 1 3.9562 6.8884 -3.4115 15 1 6.2904 7.0904 -2.7863 16 1 5.3173 4.8989 -3.1477 17 6 2.2923 3.7113 2.7291 18 6 2.6758 2.5478 3.6456 19 6 1.2686 2.6197 3.0474 20 1 -0.5400 -0.9354 0.0004 21 1 -0.5400 0.9353 0.0004 22 1 1.8501 -0.9353 0.0004 23 1 1.3585 2.1316 0.0896 24 1 2.6213 1.4026 -0.9313 25 1 2.4772 1.2356 2.1130 26 1 3.7399 0.5066 1.0921 27 1 5.1801 1.5784 2.3521 28 1 5.6627 3.2183 1.8558 29 1 4.4421 2.9979 3.1325 30 1 2.8783 5.8288 1.3503 31 1 4.4447 5.0717 1.7266 32 1 5.3360 7.9641 -0.3712 33 1 2.1462 4.6881 3.1901 34 1 3.3555 1.7951 3.2460 35 1 2.7817 2.7591 4.7097 36 1 0.4493 2.8782 3.7182 37 1 1.0217 1.9144 2.2539 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697095699.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:25 Heat of formation + Delta-G solvation = 126.474095 kcal Electronic energy + Delta-G solvation = -16294.909593 eV Core-core repulsion = 13883.854855 eV Total energy + Delta-G solvation = -2411.054738 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.66018 -35.07580 -33.97153 -32.86631 -31.07998 -28.80838 -26.41527 -24.46824 -22.24247 -21.98521 -21.39338 -19.77456 -19.45460 -16.28266 -16.16796 -15.20102 -14.91249 -14.38654 -14.23932 -14.05461 -13.16450 -12.71251 -12.61517 -12.16651 -11.98731 -11.68341 -11.36729 -11.10367 -10.97254 -10.84793 -10.64889 -10.58160 -10.50727 -10.23080 -9.95607 -9.62885 -9.11852 -9.07111 -8.35264 -7.64661 -7.38646 -5.91951 -3.88665 2.48299 3.40548 3.45925 3.51711 3.89017 4.38169 4.53831 4.81627 5.14107 5.21899 5.32579 5.42641 5.47586 5.54938 5.62391 5.69450 5.77634 5.90382 5.97793 6.04133 6.08402 6.19251 6.30707 6.37872 6.47065 6.53192 6.66992 6.91097 7.05804 7.18926 7.40903 7.60707 7.92059 8.16540 8.33659 8.67333 9.20790 9.72956 11.20059 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.025431 B = 0.008918 C = 0.007499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.772956 B = 3138.803866 C = 3732.911504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.144 4.144 3 C -0.084 4.084 4 C 0.030 3.970 5 N -0.344 5.344 6 C -0.032 4.032 7 N -0.319 5.319 8 C 0.194 3.806 9 C -0.478 4.478 10 H 0.070 0.930 11 C 0.048 3.952 12 N -0.908 5.908 13 Si 0.898 3.102 14 H -0.283 1.283 15 H -0.290 1.290 16 H -0.273 1.273 17 C -0.012 4.012 18 C -0.234 4.234 19 C -0.184 4.184 20 H 0.090 0.910 21 H 0.097 0.903 22 H 0.101 0.899 23 H 0.083 0.917 24 H 0.078 0.922 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.053 0.947 28 H 0.071 0.929 29 H 0.057 0.943 30 H 0.036 0.964 31 H 0.000 1.000 32 H 0.259 0.741 33 H 0.107 0.893 34 H 0.114 0.886 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.103 -11.688 4.993 13.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.163 4.163 3 C -0.122 4.122 4 C -0.098 4.098 5 N -0.156 5.156 6 C -0.181 4.181 7 N -0.132 5.132 8 C 0.069 3.931 9 C -0.517 4.517 10 H 0.088 0.912 11 C -0.151 4.151 12 N -0.549 5.549 13 Si 0.727 3.273 14 H -0.209 1.209 15 H -0.216 1.216 16 H -0.198 1.198 17 C -0.124 4.124 18 C -0.273 4.273 19 C -0.222 4.222 20 H 0.108 0.892 21 H 0.115 0.885 22 H 0.119 0.881 23 H 0.102 0.898 24 H 0.096 0.904 25 H 0.079 0.921 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.090 0.910 29 H 0.075 0.925 30 H 0.054 0.946 31 H 0.018 0.982 32 H 0.068 0.932 33 H 0.125 0.875 34 H 0.132 0.868 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -5.147 -11.480 4.146 13.246 hybrid contribution 0.664 0.149 0.584 0.897 sum -4.483 -11.331 4.730 13.071 Atomic orbital electron populations 1.23801 0.96048 1.01415 1.02982 1.23097 0.96042 0.98838 0.98335 1.20632 0.98263 0.94320 0.98961 1.22801 0.96833 0.91245 0.98938 1.66367 1.06591 0.99369 1.43288 1.23388 0.97286 1.01133 0.96266 1.66413 1.27213 1.02447 1.17123 1.19890 0.92752 0.82720 0.97700 1.21062 1.34822 1.02267 0.93549 0.91218 1.24971 0.96483 0.95802 0.97866 1.69955 1.42653 1.07345 1.34974 0.86487 0.77648 0.77898 0.85307 1.20900 1.21633 1.19822 1.23517 1.02141 0.93972 0.92746 1.24029 0.99531 1.04311 0.99424 1.23429 0.92112 1.03394 1.03308 0.89202 0.88497 0.88131 0.89829 0.90382 0.92064 0.91735 0.92798 0.91014 0.92470 0.94618 0.98235 0.93195 0.87477 0.86840 0.89427 0.89480 0.87531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.47 14.32 29.01 0.42 -2.06 16 2 C -0.14 -1.87 9.52 -36.02 -0.34 -2.21 16 3 C -0.08 -1.34 5.07 -27.88 -0.14 -1.48 16 4 C 0.03 0.48 3.82 -3.83 -0.01 0.47 16 5 N -0.34 -6.77 4.58 -121.13 -0.55 -7.32 16 6 C -0.03 -0.57 7.56 60.06 0.45 -0.12 16 7 N -0.32 -6.82 4.17 -108.00 -0.45 -7.27 16 8 C 0.19 5.03 4.58 -4.98 -0.02 5.01 16 9 C -0.48 -13.52 8.97 -34.44 -0.31 -13.83 16 10 H 0.07 2.00 7.81 -52.48 -0.41 1.59 16 11 C 0.05 1.38 5.46 -17.82 -0.10 1.29 16 12 N -0.91 -27.19 13.29 55.43 0.74 -26.46 16 13 Si 0.90 22.20 29.54 -169.99 -5.02 17.18 16 14 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 15 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 16 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 17 C -0.01 -0.22 5.56 -67.72 -0.38 -0.60 16 18 C -0.23 -3.52 7.03 -26.70 -0.19 -3.71 16 19 C -0.18 -2.77 9.53 -26.69 -0.25 -3.02 16 20 H 0.09 0.91 8.06 -52.48 -0.42 0.49 16 21 H 0.10 1.20 7.84 -52.49 -0.41 0.79 16 22 H 0.10 1.15 8.06 -52.49 -0.42 0.73 16 23 H 0.08 1.49 6.94 -51.93 -0.36 1.13 16 24 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 25 H 0.06 0.93 2.94 -51.93 -0.15 0.78 16 26 H 0.06 0.94 7.86 -51.93 -0.41 0.54 16 27 H 0.05 0.81 7.50 -51.93 -0.39 0.42 16 28 H 0.07 1.45 7.84 -51.93 -0.41 1.04 16 29 H 0.06 1.00 4.42 -51.93 -0.23 0.77 16 30 H 0.04 0.99 8.00 -51.93 -0.42 0.57 16 31 H 0.00 0.00 7.04 -51.93 -0.37 -0.37 16 32 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 33 H 0.11 1.97 7.88 -51.93 -0.41 1.56 16 34 H 0.11 1.71 3.38 -51.93 -0.18 1.53 16 35 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 37 H 0.11 1.62 5.22 -51.93 -0.27 1.35 16 LS Contribution 287.84 15.07 4.34 4.34 Total: -1.00 -29.46 287.84 -7.48 -36.94 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -5.65 Total: 2.88 kcal Atomic # 6 Polarization: -19.40 SS G_CDS: -0.88 Total: -20.28 kcal Atomic # 7 Polarization: -40.78 SS G_CDS: -0.27 Total: -41.05 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -29.46 -7.48 -36.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697095699.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.414 kcal (2) G-P(sol) polarization free energy of solvation -29.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds