Wall clock time and date at job start Mon Mar 30 2020 03:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50702 * 119.99994 * 2 1 4 4 C 1.53001 * 109.47259 * 124.99881 * 3 2 1 5 5 N 1.46897 * 109.47188 * 179.97438 * 4 3 2 6 6 C 1.46897 * 111.00059 * 187.28487 * 5 4 3 7 7 N 1.45405 * 111.00085 * 63.32904 * 5 4 3 8 8 C 1.46897 * 111.00128 * 191.37513 * 7 5 4 9 9 C 1.50703 * 109.46880 * 65.00463 * 8 7 5 10 10 H 1.08003 * 119.99779 * 359.97438 * 9 8 7 11 11 C 1.37882 * 119.99919 * 180.02562 * 9 8 7 12 12 N 1.31506 * 119.99893 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99728 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.46852 * 89.99902 * 13 11 9 15 15 H 1.48497 * 109.46947 * 209.99566 * 13 11 9 16 16 H 1.48495 * 109.47261 * 329.99580 * 13 11 9 17 17 C 1.46902 * 110.99397 * 67.42434 * 7 5 4 18 18 C 1.52992 * 117.50348 * 357.93550 * 17 7 5 19 19 C 1.52997 * 117.49947 * 289.26960 * 17 7 5 20 20 H 1.08004 * 119.99920 * 180.02562 * 1 2 3 21 21 H 1.07995 * 120.00059 * 359.97438 * 1 2 3 22 22 H 1.08001 * 120.00363 * 179.97438 * 2 1 3 23 23 H 1.09005 * 109.46787 * 4.99895 * 3 2 1 24 24 H 1.08994 * 109.47140 * 244.99937 * 3 2 1 25 25 H 1.09003 * 109.46969 * 300.00289 * 4 3 2 26 26 H 1.08998 * 109.46845 * 59.99699 * 4 3 2 27 27 H 1.09002 * 109.46831 * 28.84964 * 6 5 4 28 28 H 1.08999 * 109.47285 * 148.85067 * 6 5 4 29 29 H 1.09004 * 109.47105 * 268.84944 * 6 5 4 30 30 H 1.08992 * 109.47183 * 184.99770 * 8 7 5 31 31 H 1.09001 * 109.47198 * 305.00606 * 8 7 5 32 32 H 0.97002 * 119.99832 * 180.02562 * 12 11 9 33 33 H 1.08998 * 115.54825 * 143.60910 * 17 7 5 34 34 H 1.09004 * 117.50259 * 0.02562 * 18 17 7 35 35 H 1.09000 * 117.50289 * 145.01876 * 18 17 7 36 36 H 1.08995 * 117.50274 * 214.98409 * 19 17 7 37 37 H 1.09002 * 117.50191 * 359.97438 * 19 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 7 3.7699 2.6051 1.1813 6 6 4.8322 2.5996 2.1959 7 7 2.8677 3.7283 1.3775 8 6 3.5478 5.0027 1.1109 9 6 3.9312 5.0725 -0.3448 10 1 3.6937 4.2520 -1.0057 11 6 4.5861 6.1835 -0.8328 12 7 4.8756 7.1824 -0.0279 13 14 5.0619 6.2697 -2.6371 14 1 3.9562 6.8884 -3.4115 15 1 6.2904 7.0904 -2.7863 16 1 5.3173 4.8989 -3.1477 17 6 2.2923 3.7113 2.7291 18 6 2.6758 2.5478 3.6456 19 6 1.2686 2.6197 3.0474 20 1 -0.5400 -0.9354 0.0004 21 1 -0.5400 0.9353 0.0004 22 1 1.8501 -0.9353 0.0004 23 1 1.3585 2.1316 0.0896 24 1 2.6213 1.4026 -0.9313 25 1 2.4772 1.2356 2.1130 26 1 3.7399 0.5066 1.0921 27 1 5.1801 1.5784 2.3521 28 1 5.6627 3.2183 1.8558 29 1 4.4421 2.9979 3.1325 30 1 2.8783 5.8288 1.3503 31 1 4.4447 5.0717 1.7266 32 1 5.3360 7.9641 -0.3712 33 1 2.1462 4.6881 3.1901 34 1 3.3555 1.7951 3.2460 35 1 2.7817 2.7591 4.7097 36 1 0.4493 2.8782 3.7182 37 1 1.0217 1.9144 2.2539 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697095699.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:25 Heat of formation + Delta-G solvation = 108.398815 kcal Electronic energy + Delta-G solvation = -16295.693396 eV Core-core repulsion = 13883.854855 eV Total energy + Delta-G solvation = -2411.838541 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.08454 -36.25400 -35.63980 -34.63251 -32.84587 -30.08390 -28.40426 -25.95592 -23.95071 -23.36171 -22.79494 -21.25871 -20.50280 -18.31892 -17.71918 -16.76634 -16.44245 -16.02241 -15.62985 -15.39906 -14.51354 -14.38431 -14.19115 -13.80741 -13.42200 -13.24147 -12.92758 -12.70913 -12.61873 -12.49207 -12.16888 -12.01567 -11.93468 -11.68242 -11.61515 -11.26592 -10.96550 -10.55441 -10.12062 -9.15295 -8.99601 -8.13391 -6.17901 1.42752 1.44079 1.50483 1.55960 2.40073 2.50661 3.01347 3.21721 3.41441 3.85617 3.98217 4.13099 4.26111 4.30576 4.41992 4.45837 4.50238 4.59436 4.72812 4.75600 4.77938 4.98406 5.01235 5.10666 5.13388 5.18295 5.24802 5.32251 5.47732 5.75345 5.84127 6.02404 6.06417 6.27433 6.46285 6.85999 7.03126 7.48625 8.98599 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.025431 B = 0.008918 C = 0.007499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.772956 B = 3138.803866 C = 3732.911504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.153 4.153 3 C -0.078 4.078 4 C 0.032 3.968 5 N -0.370 5.370 6 C -0.027 4.027 7 N -0.325 5.325 8 C 0.213 3.787 9 C -0.489 4.489 10 H 0.061 0.939 11 C -0.004 4.004 12 N -0.942 5.942 13 Si 0.966 3.034 14 H -0.275 1.275 15 H -0.284 1.284 16 H -0.268 1.268 17 C -0.053 4.053 18 C -0.213 4.213 19 C -0.161 4.161 20 H 0.115 0.885 21 H 0.088 0.912 22 H 0.122 0.878 23 H 0.058 0.942 24 H 0.055 0.945 25 H 0.076 0.924 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.038 0.962 29 H 0.061 0.939 30 H 0.007 0.993 31 H -0.028 1.028 32 H 0.261 0.739 33 H 0.095 0.905 34 H 0.118 0.882 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.803 -14.041 5.122 16.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.171 4.171 3 C -0.116 4.116 4 C -0.095 4.095 5 N -0.183 5.183 6 C -0.176 4.176 7 N -0.138 5.138 8 C 0.086 3.914 9 C -0.528 4.528 10 H 0.079 0.921 11 C -0.200 4.200 12 N -0.584 5.584 13 Si 0.791 3.209 14 H -0.200 1.200 15 H -0.210 1.210 16 H -0.192 1.192 17 C -0.164 4.164 18 C -0.252 4.252 19 C -0.199 4.199 20 H 0.134 0.866 21 H 0.106 0.894 22 H 0.140 0.860 23 H 0.077 0.923 24 H 0.073 0.927 25 H 0.094 0.906 26 H 0.104 0.896 27 H 0.107 0.893 28 H 0.056 0.944 29 H 0.080 0.920 30 H 0.025 0.975 31 H -0.010 1.010 32 H 0.070 0.930 33 H 0.113 0.887 34 H 0.136 0.864 35 H 0.127 0.873 36 H 0.128 0.872 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -5.866 -13.853 4.284 15.642 hybrid contribution 0.828 0.845 0.596 1.324 sum -5.039 -13.009 4.880 14.779 Atomic orbital electron populations 1.23980 0.95809 1.02257 1.01067 1.22995 0.96271 0.97919 0.99961 1.20504 0.97736 0.95428 0.97932 1.22904 0.97240 0.89780 0.99605 1.66222 1.07410 1.00163 1.44553 1.23330 0.95922 1.02563 0.95789 1.66221 1.26680 1.01024 1.19833 1.19430 0.91097 0.84686 0.96143 1.21290 1.34812 1.02040 0.94644 0.92064 1.25828 0.96392 0.95394 1.02394 1.70079 1.43376 1.07926 1.36991 0.85433 0.77524 0.78073 0.79868 1.20042 1.21020 1.19249 1.23513 1.05563 0.95069 0.92282 1.24063 0.99478 1.01778 0.99861 1.23478 0.92574 1.00750 1.03071 0.86646 0.89365 0.85985 0.92343 0.92664 0.90600 0.89636 0.89318 0.94366 0.92042 0.97486 1.01017 0.93029 0.88747 0.86413 0.87343 0.87165 0.87462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.13 14.32 67.78 0.97 -3.16 16 2 C -0.15 -3.58 9.52 25.65 0.24 -3.33 16 3 C -0.08 -2.43 5.07 29.85 0.15 -2.28 16 4 C 0.03 0.96 3.82 86.30 0.33 1.29 16 5 N -0.37 -14.57 4.58 -537.15 -2.46 -17.03 16 6 C -0.03 -0.97 7.56 127.69 0.97 -0.01 16 7 N -0.33 -14.27 4.17 -495.60 -2.06 -16.33 16 8 C 0.21 11.60 4.58 85.56 0.39 11.99 16 9 C -0.49 -28.64 8.97 25.60 0.23 -28.41 16 10 H 0.06 3.62 7.81 -2.91 -0.02 3.59 16 11 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 12 N -0.94 -58.02 13.29 21.45 0.28 -57.73 16 13 Si 0.97 46.22 29.54 68.60 2.03 48.25 16 14 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 15 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 16 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 17 C -0.05 -1.92 5.56 44.91 0.25 -1.67 16 18 C -0.21 -5.90 7.03 30.62 0.22 -5.69 16 19 C -0.16 -4.46 9.53 30.62 0.29 -4.17 16 20 H 0.12 1.89 8.06 -2.91 -0.02 1.87 16 21 H 0.09 2.03 7.84 -2.91 -0.02 2.00 16 22 H 0.12 2.36 8.06 -2.91 -0.02 2.34 16 23 H 0.06 2.08 6.94 -2.38 -0.02 2.07 16 24 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 25 H 0.08 2.09 2.94 -2.39 -0.01 2.08 16 26 H 0.09 2.25 7.86 -2.39 -0.02 2.23 16 27 H 0.09 2.47 7.50 -2.39 -0.02 2.46 16 28 H 0.04 1.59 7.84 -2.39 -0.02 1.57 16 29 H 0.06 2.11 4.42 -2.38 -0.01 2.10 16 30 H 0.01 0.43 8.00 -2.39 -0.02 0.41 16 31 H -0.03 -1.64 7.04 -2.39 -0.02 -1.65 16 32 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 33 H 0.09 3.60 7.88 -2.39 -0.02 3.58 16 34 H 0.12 3.19 3.38 -2.38 -0.01 3.18 16 35 H 0.11 2.59 8.14 -2.39 -0.02 2.57 16 36 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 37 H 0.11 2.99 5.22 -2.39 -0.01 2.98 16 Total: -1.00 -65.49 287.84 3.32 -62.16 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: 1.03 Total: 15.87 kcal Atomic # 6 Polarization: -39.69 SS G_CDS: 4.50 Total: -35.19 kcal Atomic # 7 Polarization: -86.86 SS G_CDS: -4.24 Total: -91.09 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -65.49 3.32 -62.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697095699.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.564 kcal (2) G-P(sol) polarization free energy of solvation -65.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds