Wall clock time and date at job start Mon Mar 30 2020 02:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.46613 * 2 1 4 4 C 1.50698 * 109.46910 * 239.99666 * 2 1 3 5 5 H 1.08002 * 119.99818 * 239.99765 * 4 2 1 6 6 C 1.37879 * 119.99994 * 60.00171 * 4 2 1 7 7 N 1.31521 * 119.99822 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00225 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47048 * 90.00106 * 8 6 4 10 10 H 1.48496 * 109.47438 * 210.00106 * 8 6 4 11 11 H 1.48506 * 109.47020 * 330.00588 * 8 6 4 12 12 N 1.46901 * 109.46825 * 120.00086 * 2 1 3 13 13 C 1.49703 * 110.99587 * 179.87624 * 12 2 1 14 14 C 1.50144 * 104.83482 * 245.72669 * 13 12 2 15 15 H 1.08993 * 110.06067 * 80.39949 * 14 13 12 16 16 C 1.50520 * 126.12631 * 216.50591 * 14 13 12 17 17 N 1.50188 * 101.79182 * 155.34179 * 16 14 13 18 18 C 1.49701 * 107.64940 * 334.31090 * 17 16 14 19 19 C 1.50133 * 104.73519 * 352.54531 * 18 17 16 20 20 C 1.52993 * 110.06369 * 280.22277 * 19 18 17 21 21 C 1.50177 * 111.00361 * 60.18846 * 12 2 1 22 22 H 1.09004 * 109.47351 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47261 * 300.00229 * 1 2 3 24 24 H 1.08998 * 109.46902 * 59.99957 * 1 2 3 25 25 H 0.96997 * 119.99264 * 180.02562 * 7 6 4 26 26 H 1.09002 * 110.38655 * 4.59842 * 13 12 2 27 27 H 1.08997 * 110.38495 * 126.85689 * 13 12 2 28 28 H 1.08998 * 111.37783 * 37.14553 * 16 14 13 29 29 H 1.08998 * 110.86952 * 273.30827 * 16 14 13 30 30 H 1.00897 * 110.99927 * 95.97398 * 17 16 14 31 31 H 1.09000 * 110.38150 * 233.73977 * 18 17 16 32 32 H 1.08999 * 110.38948 * 111.36330 * 18 17 16 33 33 H 1.09004 * 109.47712 * 277.15325 * 20 19 18 34 34 H 1.08999 * 109.47160 * 37.15046 * 20 19 18 35 35 H 1.08997 * 109.47169 * 157.15097 * 20 19 18 36 36 H 1.08999 * 110.86999 * 265.12554 * 21 12 2 37 37 H 1.09005 * 110.86874 * 28.79881 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3224 -1.1197 -4.0079 9 1 1.3446 -2.1616 -4.4123 10 1 2.4872 -0.1404 -5.1120 11 1 3.6307 -1.7569 -3.7119 12 7 2.0196 -0.6925 1.1995 13 6 3.5161 -0.7151 1.2325 14 6 3.8818 -2.1650 1.0970 15 1 3.8310 -2.4672 0.0511 16 6 5.0285 -2.8588 1.7822 17 7 4.5569 -4.2845 1.8021 18 6 3.0605 -4.2682 1.7622 19 6 2.6904 -2.8205 1.9081 20 6 2.7689 -2.4042 3.3782 21 6 1.5419 -2.1159 1.2319 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 0.7081 1.1607 -3.4844 26 1 3.9230 -0.1415 0.3997 27 1 3.8810 -0.3185 2.1799 28 1 5.1720 -2.4831 2.7952 29 1 5.9449 -2.7612 1.2002 30 1 4.9337 -4.8010 1.0215 31 1 2.6523 -4.8495 2.5890 32 1 2.7017 -4.6577 0.8095 33 1 1.8465 -2.6865 3.8857 34 1 3.6126 -2.9050 3.8530 35 1 2.9037 -1.3246 3.4433 36 1 0.6297 -2.2060 1.8216 37 1 1.3921 -2.4983 0.2222 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703601507.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:28 Heat of formation + Delta-G solvation = 14.883089 kcal Electronic energy + Delta-G solvation = -16827.917702 eV Core-core repulsion = 14412.024016 eV Total energy + Delta-G solvation = -2415.893687 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.01251 -37.72257 -34.90775 -32.63976 -31.78684 -29.28414 -27.53832 -27.42765 -26.86939 -24.20943 -21.60113 -20.88220 -19.85736 -18.28735 -17.39311 -17.10085 -16.26508 -15.60583 -15.50890 -15.20544 -14.76143 -14.10370 -13.70715 -13.43304 -13.32606 -13.10922 -13.01091 -12.87937 -12.76705 -12.54210 -12.39384 -12.14254 -12.02614 -11.78918 -11.50982 -11.37583 -11.01557 -10.76504 -10.51422 -9.57325 -8.98639 -8.07617 -6.28249 1.32555 1.34694 1.42482 2.35778 3.01584 3.12553 3.20322 3.38256 3.87066 4.17227 4.36108 4.39925 4.45540 4.52999 4.73078 4.76710 4.80646 4.81598 4.94627 4.98031 5.08390 5.13146 5.16123 5.18863 5.24673 5.32664 5.40012 5.52243 5.59581 5.62455 5.68309 5.94642 6.14925 6.32619 6.39764 6.43610 6.91223 7.41850 8.89509 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.030916 B = 0.010314 C = 0.008769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.463420 B = 2714.090947 C = 3192.127717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.203 3.797 3 H 0.003 0.997 4 C -0.542 4.542 5 H 0.055 0.945 6 C 0.019 3.981 7 N -0.914 5.914 8 Si 0.945 3.055 9 H -0.277 1.277 10 H -0.284 1.284 11 H -0.273 1.273 12 N -0.523 5.523 13 C 0.072 3.928 14 C -0.149 4.149 15 H 0.046 0.954 16 C 0.070 3.930 17 N -0.678 5.678 18 C 0.072 3.928 19 C -0.101 4.101 20 C -0.121 4.121 21 C 0.075 3.925 22 H 0.028 0.972 23 H 0.027 0.973 24 H 0.058 0.942 25 H 0.261 0.739 26 H 0.036 0.964 27 H 0.080 0.920 28 H 0.093 0.907 29 H 0.075 0.925 30 H 0.342 0.658 31 H 0.091 0.909 32 H 0.044 0.956 33 H 0.056 0.944 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.070 0.930 37 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.323 -8.234 8.170 12.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.095 3.905 3 H 0.021 0.979 4 C -0.581 4.581 5 H 0.073 0.927 6 C -0.181 4.181 7 N -0.553 5.553 8 Si 0.772 3.228 9 H -0.203 1.203 10 H -0.209 1.209 11 H -0.198 1.198 12 N -0.246 5.246 13 C -0.056 4.056 14 C -0.170 4.170 15 H 0.065 0.935 16 C -0.059 4.059 17 N -0.306 5.306 18 C -0.057 4.057 19 C -0.103 4.103 20 C -0.178 4.178 21 C -0.053 4.053 22 H 0.047 0.953 23 H 0.046 0.954 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.055 0.945 27 H 0.098 0.902 28 H 0.111 0.889 29 H 0.093 0.907 30 H 0.157 0.843 31 H 0.110 0.890 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 5.105 -7.927 9.193 13.168 hybrid contribution 0.082 -0.118 -3.100 3.103 sum 5.187 -8.046 6.093 11.347 Atomic orbital electron populations 1.21592 0.97495 0.98961 0.99612 1.19223 0.92565 0.92732 0.85955 0.97878 1.21979 1.31222 1.12514 0.92368 0.92726 1.25640 0.95289 0.95578 1.01597 1.70007 1.37488 1.23913 1.23923 0.85755 0.78670 0.78493 0.79904 1.20319 1.20921 1.19784 1.65492 1.06925 1.13316 1.38906 1.21779 0.89002 0.94688 1.00160 1.23025 0.98323 0.96980 0.98659 0.93521 1.22152 0.95330 0.87514 1.00870 1.63361 1.06105 1.12377 1.48720 1.21797 0.88535 0.94203 1.01133 1.21827 0.95459 0.95639 0.97345 1.21757 1.01742 1.01639 0.92614 1.22067 0.96551 0.88600 0.98116 0.95304 0.95412 0.92278 0.92949 0.94528 0.90189 0.88932 0.90689 0.84318 0.89047 0.93751 0.92481 0.91496 0.92410 0.91201 0.94681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.84 8.88 71.98 0.64 -5.21 16 2 C 0.20 10.30 2.27 44.17 0.10 10.40 16 3 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 4 C -0.54 -28.94 6.43 25.60 0.16 -28.78 16 5 H 0.05 2.90 4.92 -2.91 -0.01 2.89 16 6 C 0.02 1.01 5.30 84.65 0.45 1.46 16 7 N -0.91 -52.38 11.32 21.45 0.24 -52.14 16 8 Si 0.95 43.41 29.54 68.60 2.03 45.43 16 9 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 10 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 11 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 12 N -0.52 -22.11 4.91 -868.32 -4.26 -26.37 16 13 C 0.07 2.74 5.37 84.84 0.46 3.19 16 14 C -0.15 -4.92 2.50 -10.61 -0.03 -4.95 16 15 H 0.05 1.82 6.46 -2.39 -0.02 1.81 16 16 C 0.07 1.81 6.93 84.86 0.59 2.40 16 17 N -0.68 -16.61 7.46 -508.00 -3.79 -20.40 16 18 C 0.07 1.92 6.76 84.83 0.57 2.49 16 19 C -0.10 -3.11 1.30 -51.93 -0.07 -3.17 16 20 C -0.12 -3.27 7.73 71.98 0.56 -2.71 16 21 C 0.07 2.84 4.32 84.93 0.37 3.21 16 22 H 0.03 1.35 7.13 -2.38 -0.02 1.33 16 23 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.06 3.21 6.07 -2.39 -0.01 3.20 16 25 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 26 H 0.04 1.59 7.17 -2.39 -0.02 1.57 16 27 H 0.08 2.70 6.98 -2.39 -0.02 2.69 16 28 H 0.09 2.24 6.63 -2.39 -0.02 2.22 16 29 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.34 7.57 8.94 -89.70 -0.80 6.77 16 31 H 0.09 2.17 7.99 -2.39 -0.02 2.15 16 32 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 34 H 0.07 1.64 6.51 -2.39 -0.02 1.63 16 35 H 0.06 1.70 5.85 -2.39 -0.01 1.69 16 36 H 0.07 2.55 8.13 -2.39 -0.02 2.53 16 37 H 0.03 1.53 6.31 -2.38 -0.02 1.52 16 Total: -1.00 -57.63 270.45 -1.72 -59.35 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: 0.26 Total: 15.78 kcal Atomic # 6 Polarization: -25.46 SS G_CDS: 3.80 Total: -21.66 kcal Atomic # 7 Polarization: -91.10 SS G_CDS: -7.81 Total: -98.90 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Total: -57.63 -1.72 -59.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703601507.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.237 kcal (2) G-P(sol) polarization free energy of solvation -57.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds