Wall clock time and date at job start Mon Mar 30 2020 02:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47403 * 2 1 4 4 C 1.50704 * 109.47124 * 239.99404 * 2 1 3 5 5 H 1.08001 * 120.00006 * 244.84033 * 4 2 1 6 6 C 1.37876 * 119.99720 * 64.84039 * 4 2 1 7 7 N 1.31522 * 120.00232 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99944 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47017 * 60.00533 * 8 6 4 10 10 H 1.48504 * 109.47286 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47175 * 299.99964 * 8 6 4 12 12 N 1.46907 * 109.46825 * 119.99923 * 2 1 3 13 13 C 1.50102 * 110.99846 * 297.00719 * 12 2 1 14 14 C 1.51380 * 102.37413 * 212.55313 * 13 12 2 15 15 H 1.08994 * 111.21437 * 287.67914 * 14 13 12 16 16 C 1.51375 * 124.04459 * 150.73431 * 14 13 12 17 17 N 1.50106 * 102.37295 * 209.26539 * 16 14 13 18 18 C 1.49773 * 107.62600 * 25.79657 * 17 16 14 19 19 C 1.49481 * 104.66699 * 6.70919 * 18 17 16 20 20 C 1.53000 * 108.56565 * 77.83436 * 19 18 17 21 21 C 1.49229 * 129.29649 * 211.50835 * 19 18 17 22 22 H 1.09003 * 109.47216 * 300.00257 * 1 2 3 23 23 H 1.09004 * 109.46672 * 60.00117 * 1 2 3 24 24 H 1.08996 * 109.47403 * 179.97438 * 1 2 3 25 25 H 0.96994 * 120.00173 * 180.02562 * 7 6 4 26 26 H 1.09002 * 110.82712 * 94.33470 * 13 12 2 27 27 H 1.09002 * 110.99971 * 330.85362 * 13 12 2 28 28 H 1.09003 * 110.82355 * 91.04016 * 16 14 13 29 29 H 1.09002 * 110.82822 * 327.48614 * 16 14 13 30 30 H 1.00903 * 110.99636 * 264.15149 * 17 16 14 31 31 H 1.09001 * 110.41317 * 125.53357 * 18 17 16 32 32 H 1.08990 * 110.42155 * 247.87746 * 18 17 16 33 33 H 1.08995 * 109.47531 * 66.97509 * 20 19 18 34 34 H 1.09001 * 109.46806 * 186.97160 * 20 19 18 35 35 H 1.09004 * 109.47472 * 306.97104 * 20 19 18 36 36 H 1.08998 * 110.35217 * 29.71462 * 21 19 18 37 37 H 1.08996 * 110.51761 * 267.35018 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.5873 -1.6320 -1.1332 6 6 1.7835 -0.1842 -2.4802 7 7 1.1074 0.9376 -2.5987 8 14 2.4068 -1.0646 -4.0054 9 1 1.8181 -2.4266 -4.0660 10 1 2.0099 -0.3001 -5.2151 11 1 3.8871 -1.1671 -3.9475 12 7 2.0197 -0.6925 1.1995 13 6 1.5990 0.0291 2.4466 14 6 2.7554 -0.2432 3.3848 15 1 2.7535 -1.2794 3.7227 16 6 3.1863 0.6936 4.4930 17 7 4.6567 0.4113 4.5992 18 6 5.1180 -0.0979 3.2684 19 6 3.9328 0.0598 2.3713 20 6 3.8223 1.5305 1.9641 21 6 3.5154 -0.7686 1.2023 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0276 -0.0005 25 1 0.9320 1.3076 -3.4780 26 1 0.6728 -0.3880 2.8420 27 1 1.4929 1.0982 2.2624 28 1 2.6767 0.4510 5.4255 29 1 3.0103 1.7322 4.2129 30 1 4.8442 -0.2606 5.3282 31 1 5.9540 0.4981 2.9022 32 1 5.4031 -1.1474 3.3408 33 1 4.6700 1.7976 1.3332 34 1 2.8954 1.6859 1.4121 35 1 3.8226 2.1557 2.8570 36 1 3.8435 -1.7999 1.3321 37 1 3.9189 -0.3556 0.2778 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703601521.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:35 Heat of formation + Delta-G solvation = 40.057260 kcal Electronic energy + Delta-G solvation = -16661.349665 eV Core-core repulsion = 14246.547612 eV Total energy + Delta-G solvation = -2414.802053 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.84262 -36.08867 -33.13326 -31.03058 -30.21201 -28.22902 -26.37421 -25.86683 -24.66490 -22.69180 -20.12228 -19.35470 -18.41432 -16.48991 -16.03354 -15.36046 -14.94122 -14.32823 -14.02539 -13.73001 -12.92174 -12.61482 -12.50696 -12.01322 -11.78748 -11.63889 -11.40836 -11.17605 -10.98618 -10.77595 -10.74305 -10.67303 -10.28958 -10.12230 -9.88023 -9.78500 -9.52542 -8.90343 -8.49537 -8.41518 -7.18794 -6.02211 -4.05413 3.31895 3.36315 3.39278 4.20424 4.29658 4.41517 4.89059 4.94186 5.30265 5.41487 5.51621 5.58182 5.65750 5.78494 5.88822 5.95344 5.99615 6.15660 6.23561 6.36383 6.48120 6.50234 6.64100 6.67369 6.77078 6.83875 6.85917 7.03631 7.07111 7.38481 7.48121 7.60422 7.83853 8.08564 8.29509 8.55159 9.01832 9.59310 11.05839 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.043032 B = 0.008185 C = 0.007543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.519615 B = 3420.043859 C = 3711.080612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.204 3.796 3 H 0.007 0.993 4 C -0.504 4.504 5 H 0.061 0.939 6 C 0.060 3.940 7 N -0.894 5.894 8 Si 0.895 3.105 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.516 5.516 13 C 0.056 3.944 14 C -0.144 4.144 15 H 0.079 0.921 16 C 0.057 3.943 17 N -0.682 5.682 18 C 0.074 3.926 19 C -0.118 4.118 20 C -0.154 4.154 21 C 0.077 3.923 22 H 0.008 0.992 23 H 0.076 0.924 24 H 0.034 0.966 25 H 0.261 0.739 26 H 0.066 0.934 27 H 0.049 0.951 28 H 0.064 0.936 29 H 0.085 0.915 30 H 0.333 0.667 31 H 0.077 0.923 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.403 -0.630 11.030 11.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.097 3.903 3 H 0.025 0.975 4 C -0.543 4.543 5 H 0.079 0.921 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.723 3.277 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.203 1.203 12 N -0.241 5.241 13 C -0.072 4.072 14 C -0.164 4.164 15 H 0.097 0.903 16 C -0.072 4.072 17 N -0.310 5.310 18 C -0.055 4.055 19 C -0.120 4.120 20 C -0.211 4.211 21 C -0.051 4.051 22 H 0.027 0.973 23 H 0.094 0.906 24 H 0.053 0.947 25 H 0.071 0.929 26 H 0.085 0.915 27 H 0.067 0.933 28 H 0.082 0.918 29 H 0.103 0.897 30 H 0.147 0.853 31 H 0.095 0.905 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.329 -0.309 10.759 11.602 hybrid contribution 0.191 -0.561 -0.959 1.127 sum 4.520 -0.870 9.800 10.828 Atomic orbital electron populations 1.21746 0.97970 0.99466 0.99434 1.19470 0.92147 0.92425 0.86232 0.97543 1.21079 1.34600 1.08611 0.89959 0.92100 1.24930 0.95289 0.94982 0.98968 1.69911 1.40164 1.19496 1.23698 0.86612 0.79192 0.79710 0.82203 1.20240 1.21372 1.20334 1.65363 1.07054 1.49557 1.02121 1.22399 0.96179 0.97470 0.91180 1.23212 0.97499 0.99944 0.95760 0.90307 1.22414 0.87596 0.99958 0.97228 1.63334 1.14775 1.47255 1.05625 1.21624 0.96661 0.98496 0.88738 1.21786 0.95283 0.98161 0.96748 1.22371 1.02747 0.94753 1.01182 1.21692 0.89705 0.97798 0.95884 0.97336 0.90567 0.94681 0.92933 0.91527 0.93329 0.91792 0.89699 0.85308 0.90466 0.93211 0.92975 0.91381 0.92198 0.92434 0.90416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.13 8.98 37.16 0.33 -2.80 16 2 C 0.20 5.09 1.57 -68.86 -0.11 4.99 16 3 H 0.01 0.19 6.31 -51.93 -0.33 -0.14 16 4 C -0.50 -13.75 7.35 -34.44 -0.25 -14.01 16 5 H 0.06 1.67 7.45 -52.49 -0.39 1.28 16 6 C 0.06 1.65 5.32 -17.82 -0.09 1.55 16 7 N -0.89 -25.51 11.68 55.43 0.65 -24.86 16 8 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 12 N -0.52 -11.08 5.11 -225.96 -1.15 -12.24 16 13 C 0.06 1.01 4.78 -2.85 -0.01 1.00 16 14 C -0.14 -2.20 3.16 -89.35 -0.28 -2.48 16 15 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 16 C 0.06 0.74 6.85 -2.85 -0.02 0.72 16 17 N -0.68 -8.62 7.49 -111.81 -0.84 -9.46 16 18 C 0.07 1.01 6.82 -3.95 -0.03 0.99 16 19 C -0.12 -1.91 1.47 -155.19 -0.23 -2.14 16 20 C -0.15 -2.62 7.32 37.16 0.27 -2.35 16 21 C 0.08 1.52 5.31 -4.07 -0.02 1.50 16 22 H 0.01 0.17 7.28 -51.93 -0.38 -0.21 16 23 H 0.08 2.03 6.46 -51.93 -0.34 1.69 16 24 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 25 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 26 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.05 0.92 5.99 -51.93 -0.31 0.60 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.08 1.16 6.05 -51.93 -0.31 0.85 16 30 H 0.33 3.54 8.94 -39.29 -0.35 3.19 16 31 H 0.08 1.05 7.96 -51.93 -0.41 0.64 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 1.34 3.92 -51.93 -0.20 1.14 16 35 H 0.06 0.94 5.51 -51.93 -0.29 0.65 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.08 1.71 6.63 -51.93 -0.34 1.37 16 LS Contribution 271.86 15.07 4.10 4.10 Total: -1.00 -27.97 271.86 -8.46 -36.43 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -5.75 Total: 2.72 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: -0.44 Total: -13.04 kcal Atomic # 7 Polarization: -45.21 SS G_CDS: -1.34 Total: -46.56 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -27.97 -8.46 -36.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703601521.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.486 kcal (2) G-P(sol) polarization free energy of solvation -27.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds