Wall clock time and date at job start Mon Mar 30 2020 02:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47403 * 2 1 4 4 C 1.50704 * 109.47124 * 239.99404 * 2 1 3 5 5 H 1.08001 * 120.00006 * 244.84033 * 4 2 1 6 6 C 1.37876 * 119.99720 * 64.84039 * 4 2 1 7 7 N 1.31522 * 120.00232 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99944 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47017 * 60.00533 * 8 6 4 10 10 H 1.48504 * 109.47286 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47175 * 299.99964 * 8 6 4 12 12 N 1.46907 * 109.46825 * 119.99923 * 2 1 3 13 13 C 1.50102 * 110.99846 * 297.00719 * 12 2 1 14 14 C 1.51380 * 102.37413 * 212.55313 * 13 12 2 15 15 H 1.08994 * 111.21437 * 287.67914 * 14 13 12 16 16 C 1.51375 * 124.04459 * 150.73431 * 14 13 12 17 17 N 1.50106 * 102.37295 * 209.26539 * 16 14 13 18 18 C 1.49773 * 107.62600 * 25.79657 * 17 16 14 19 19 C 1.49481 * 104.66699 * 6.70919 * 18 17 16 20 20 C 1.53000 * 108.56565 * 77.83436 * 19 18 17 21 21 C 1.49229 * 129.29649 * 211.50835 * 19 18 17 22 22 H 1.09003 * 109.47216 * 300.00257 * 1 2 3 23 23 H 1.09004 * 109.46672 * 60.00117 * 1 2 3 24 24 H 1.08996 * 109.47403 * 179.97438 * 1 2 3 25 25 H 0.96994 * 120.00173 * 180.02562 * 7 6 4 26 26 H 1.09002 * 110.82712 * 94.33470 * 13 12 2 27 27 H 1.09002 * 110.99971 * 330.85362 * 13 12 2 28 28 H 1.09003 * 110.82355 * 91.04016 * 16 14 13 29 29 H 1.09002 * 110.82822 * 327.48614 * 16 14 13 30 30 H 1.00903 * 110.99636 * 264.15149 * 17 16 14 31 31 H 1.09001 * 110.41317 * 125.53357 * 18 17 16 32 32 H 1.08990 * 110.42155 * 247.87746 * 18 17 16 33 33 H 1.08995 * 109.47531 * 66.97509 * 20 19 18 34 34 H 1.09001 * 109.46806 * 186.97160 * 20 19 18 35 35 H 1.09004 * 109.47472 * 306.97104 * 20 19 18 36 36 H 1.08998 * 110.35217 * 29.71462 * 21 19 18 37 37 H 1.08996 * 110.51761 * 267.35018 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.5873 -1.6320 -1.1332 6 6 1.7835 -0.1842 -2.4802 7 7 1.1074 0.9376 -2.5987 8 14 2.4068 -1.0646 -4.0054 9 1 1.8181 -2.4266 -4.0660 10 1 2.0099 -0.3001 -5.2151 11 1 3.8871 -1.1671 -3.9475 12 7 2.0197 -0.6925 1.1995 13 6 1.5990 0.0291 2.4466 14 6 2.7554 -0.2432 3.3848 15 1 2.7535 -1.2794 3.7227 16 6 3.1863 0.6936 4.4930 17 7 4.6567 0.4113 4.5992 18 6 5.1180 -0.0979 3.2684 19 6 3.9328 0.0598 2.3713 20 6 3.8223 1.5305 1.9641 21 6 3.5154 -0.7686 1.2023 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0276 -0.0005 25 1 0.9320 1.3076 -3.4780 26 1 0.6728 -0.3880 2.8420 27 1 1.4929 1.0982 2.2624 28 1 2.6767 0.4510 5.4255 29 1 3.0103 1.7322 4.2129 30 1 4.8442 -0.2606 5.3282 31 1 5.9540 0.4981 2.9022 32 1 5.4031 -1.1474 3.3408 33 1 4.6700 1.7976 1.3332 34 1 2.8954 1.6859 1.4121 35 1 3.8226 2.1557 2.8570 36 1 3.8435 -1.7999 1.3321 37 1 3.9189 -0.3556 0.2778 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703601521.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:34 Heat of formation + Delta-G solvation = 19.448399 kcal Electronic energy + Delta-G solvation = -16662.243332 eV Core-core repulsion = 14246.547612 eV Total energy + Delta-G solvation = -2415.695720 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.19423 -37.65603 -34.98586 -32.65327 -31.66816 -29.82487 -27.88169 -27.36724 -26.51387 -24.15951 -21.61795 -21.00458 -19.77826 -18.29570 -17.44573 -16.95142 -16.60116 -15.78084 -15.61547 -15.24237 -14.59502 -14.15986 -13.89655 -13.48813 -13.34914 -13.13614 -12.92863 -12.83251 -12.70108 -12.61151 -12.34151 -12.28466 -12.15203 -11.89476 -11.47146 -11.31909 -10.95666 -10.86059 -10.55451 -9.51578 -8.92141 -8.13819 -6.23944 1.40085 1.41639 1.49222 2.40518 2.96646 3.15803 3.17166 3.35491 3.70673 4.15494 4.26382 4.30243 4.39637 4.51466 4.66586 4.67656 4.72410 4.78752 4.81169 4.88861 4.96072 5.02558 5.08357 5.13180 5.14611 5.25628 5.34450 5.42035 5.49999 5.61596 5.71394 5.72605 6.17144 6.31470 6.50716 6.63078 6.90762 7.44787 8.93327 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.043032 B = 0.008185 C = 0.007543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.519615 B = 3420.043859 C = 3711.080612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.212 3.788 3 H -0.025 1.025 4 C -0.518 4.518 5 H 0.054 0.946 6 C 0.012 3.988 7 N -0.921 5.921 8 Si 0.956 3.044 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.272 1.272 12 N -0.528 5.528 13 C 0.055 3.945 14 C -0.129 4.129 15 H 0.086 0.914 16 C 0.064 3.936 17 N -0.679 5.679 18 C 0.080 3.920 19 C -0.116 4.116 20 C -0.146 4.146 21 C 0.079 3.921 22 H 0.029 0.971 23 H 0.050 0.950 24 H 0.031 0.969 25 H 0.262 0.738 26 H 0.074 0.926 27 H 0.039 0.961 28 H 0.091 0.909 29 H 0.077 0.923 30 H 0.349 0.651 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.045 0.955 34 H 0.035 0.965 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.262 -1.434 12.698 13.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.105 3.895 3 H -0.008 1.008 4 C -0.556 4.556 5 H 0.072 0.928 6 C -0.187 4.187 7 N -0.561 5.561 8 Si 0.782 3.218 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.197 1.197 12 N -0.252 5.252 13 C -0.073 4.073 14 C -0.150 4.150 15 H 0.104 0.896 16 C -0.065 4.065 17 N -0.308 5.308 18 C -0.049 4.049 19 C -0.118 4.118 20 C -0.203 4.203 21 C -0.049 4.049 22 H 0.048 0.952 23 H 0.069 0.931 24 H 0.050 0.950 25 H 0.071 0.929 26 H 0.092 0.908 27 H 0.057 0.943 28 H 0.110 0.890 29 H 0.096 0.904 30 H 0.165 0.835 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 5.199 -1.124 12.453 13.542 hybrid contribution -0.085 -0.307 -1.445 1.479 sum 5.114 -1.432 11.009 12.223 Atomic orbital electron populations 1.21580 0.97751 0.99049 0.99184 1.19205 0.92232 0.90732 0.87335 1.00754 1.21346 1.34549 1.08463 0.91289 0.92825 1.25690 0.95483 0.95667 1.01824 1.70034 1.41112 1.20707 1.24268 0.85640 0.78835 0.78659 0.78693 1.19725 1.20908 1.19688 1.65286 1.08381 1.49478 1.02099 1.22414 0.97799 0.96601 0.90496 1.23146 0.95029 1.01010 0.95793 0.89613 1.22395 0.87874 0.98835 0.97407 1.63279 1.14232 1.47908 1.05345 1.21570 0.95288 0.99620 0.88453 1.21688 0.97594 0.96499 0.96049 1.22285 1.00691 0.95986 1.01313 1.21571 0.88693 0.98593 0.96020 0.95224 0.93119 0.94959 0.92948 0.90762 0.94325 0.89019 0.90440 0.83473 0.90351 0.91669 0.93623 0.94640 0.90491 0.91706 0.93692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.86 8.98 71.98 0.65 -5.21 16 2 C 0.21 10.93 1.57 44.17 0.07 11.00 16 3 H -0.02 -1.43 6.31 -2.39 -0.02 -1.44 16 4 C -0.52 -28.96 7.35 25.60 0.19 -28.77 16 5 H 0.05 3.00 7.45 -2.91 -0.02 2.98 16 6 C 0.01 0.67 5.32 84.65 0.45 1.13 16 7 N -0.92 -53.92 11.68 21.45 0.25 -53.67 16 8 Si 0.96 44.29 29.54 68.60 2.03 46.31 16 9 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 10 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 11 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 12 N -0.53 -22.79 5.11 -868.81 -4.44 -27.23 16 13 C 0.05 1.94 4.78 85.15 0.41 2.35 16 14 C -0.13 -3.65 3.16 -9.97 -0.03 -3.68 16 15 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 16 C 0.06 1.44 6.85 85.14 0.58 2.02 16 17 N -0.68 -14.59 7.49 -507.66 -3.80 -18.40 16 18 C 0.08 1.96 6.82 84.62 0.58 2.54 16 19 C -0.12 -3.63 1.47 -52.62 -0.08 -3.71 16 20 C -0.15 -4.96 7.32 71.98 0.53 -4.43 16 21 C 0.08 3.12 5.31 84.54 0.45 3.57 16 22 H 0.03 1.29 7.28 -2.39 -0.02 1.28 16 23 H 0.05 2.77 6.46 -2.38 -0.02 2.75 16 24 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 26 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 27 H 0.04 1.46 5.99 -2.39 -0.01 1.44 16 28 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.08 1.90 6.05 -2.39 -0.01 1.89 16 30 H 0.35 5.87 8.94 -89.69 -0.80 5.07 16 31 H 0.08 1.94 7.96 -2.39 -0.02 1.92 16 32 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.03 1.43 3.92 -2.39 -0.01 1.42 16 35 H 0.08 2.32 5.51 -2.39 -0.01 2.31 16 36 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 37 H 0.04 2.04 6.63 -2.39 -0.02 2.03 16 Total: -1.00 -60.75 271.86 -1.91 -62.66 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: 0.26 Total: 13.52 kcal Atomic # 6 Polarization: -26.99 SS G_CDS: 3.79 Total: -23.21 kcal Atomic # 7 Polarization: -91.30 SS G_CDS: -7.99 Total: -99.29 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.31 kcal Total: -60.75 -1.91 -62.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703601521.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.112 kcal (2) G-P(sol) polarization free energy of solvation -60.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds