Wall clock time and date at job start Mon Mar 30 2020 02:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47184 * 2 1 4 4 C 1.50698 * 109.47100 * 119.99657 * 2 1 3 5 5 H 1.08004 * 119.99675 * 119.99957 * 4 2 1 6 6 C 1.37877 * 120.00204 * 300.00084 * 4 2 1 7 7 N 1.31512 * 120.00207 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00213 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47526 * 89.99465 * 8 6 4 10 10 H 1.48493 * 109.47086 * 209.99803 * 8 6 4 11 11 H 1.48502 * 109.46751 * 329.99727 * 8 6 4 12 12 N 1.46898 * 109.46952 * 239.99496 * 2 1 3 13 13 C 1.46904 * 111.00010 * 129.39870 * 12 2 1 14 14 C 1.54992 * 113.20104 * 57.51647 * 13 12 2 15 15 C 1.56386 * 103.65681 * 147.04641 * 14 13 12 16 16 N 1.48233 * 106.91825 * 1.06699 * 15 14 13 17 17 C 1.48809 * 105.17677 * 332.48155 * 16 15 14 18 18 C 1.47673 * 108.91614 * 88.13458 * 16 15 14 19 19 C 1.52987 * 109.28093 * 312.91750 * 18 16 15 20 20 C 1.53149 * 110.09585 * 304.78773 * 19 18 16 21 21 H 1.08999 * 109.47209 * 305.94195 * 1 2 3 22 22 H 1.09000 * 109.47453 * 65.93812 * 1 2 3 23 23 H 1.09002 * 109.47065 * 185.94407 * 1 2 3 24 24 H 0.96995 * 120.00802 * 180.02562 * 7 6 4 25 25 H 1.00896 * 111.00327 * 253.34717 * 12 2 1 26 26 H 1.08997 * 110.38093 * 265.30217 * 14 13 12 27 27 H 1.09000 * 110.37889 * 27.66384 * 14 13 12 28 28 H 1.09006 * 109.94043 * 241.67095 * 15 14 13 29 29 H 1.08998 * 109.91236 * 120.45011 * 15 14 13 30 30 H 1.09000 * 111.68315 * 284.21929 * 17 16 15 31 31 H 1.08995 * 110.18165 * 160.56063 * 17 16 15 32 32 H 1.09006 * 109.50181 * 192.97965 * 18 16 15 33 33 H 1.08999 * 109.50152 * 72.86162 * 18 16 15 34 34 H 1.09005 * 109.36833 * 184.59171 * 19 18 16 35 35 H 1.09007 * 109.36862 * 64.97860 * 19 18 16 36 36 H 1.08997 * 109.63325 * 294.28617 * 20 19 18 37 37 H 1.08998 * 109.79307 * 173.79435 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2392 2.4827 7 7 0.9435 0.8303 2.6034 8 14 2.3225 -1.1193 4.0080 9 1 3.6305 -0.5439 4.4119 10 1 1.3445 -0.9487 5.1123 11 1 2.4879 -2.5652 3.7123 12 7 2.0196 -0.6926 -1.1994 13 6 3.0158 0.1220 -1.9079 14 6 4.2314 0.5042 -1.0255 15 6 5.4240 0.5424 -2.0364 16 7 4.8665 0.2271 -3.3733 17 6 3.6697 -0.6162 -3.1074 18 6 4.4123 1.4797 -4.0101 19 6 3.5865 2.2862 -3.0060 20 6 2.4338 1.4337 -2.4675 21 1 -0.3633 0.6032 0.8320 22 1 -0.3634 0.4190 -0.9383 23 1 -0.3633 -1.0222 0.1064 24 1 0.7095 1.1620 3.4843 25 1 2.3946 -1.5996 -0.9654 26 1 4.0812 1.4862 -0.5771 27 1 4.3899 -0.2471 -0.2519 28 1 6.1707 -0.2017 -1.7587 29 1 5.8725 1.5358 -2.0441 30 1 3.9471 -1.6342 -2.8337 31 1 3.0081 -0.6140 -3.9736 32 1 3.7989 1.2441 -4.8798 33 1 5.2779 2.0641 -4.3220 34 1 3.1825 3.1710 -3.4982 35 1 4.2249 2.5952 -2.1783 36 1 1.7359 1.2098 -3.2742 37 1 1.9157 1.9723 -1.6740 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714901881.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:20 Heat of formation + Delta-G solvation = 6.411684 kcal Electronic energy + Delta-G solvation = -16676.476841 eV Core-core repulsion = 14260.215806 eV Total energy + Delta-G solvation = -2416.261035 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.46569 -35.51557 -32.57181 -31.78488 -30.15980 -28.90196 -26.88372 -25.06292 -23.84347 -22.34504 -20.66888 -19.58330 -18.31584 -16.71632 -15.90958 -15.49196 -14.75093 -14.34850 -13.72557 -13.29402 -12.73267 -12.57285 -12.47990 -12.29991 -11.84671 -11.61982 -11.37992 -11.18518 -10.97282 -10.81515 -10.74831 -10.51397 -10.36786 -10.25721 -10.16963 -9.83572 -9.77039 -8.91115 -8.43003 -8.17457 -7.29441 -6.03780 -4.12716 3.25393 3.32938 3.35757 4.31156 4.37485 4.81834 5.10279 5.22842 5.25904 5.34166 5.39031 5.47629 5.55435 5.70799 5.80675 5.93551 5.98718 6.05781 6.19405 6.24172 6.36942 6.43957 6.58924 6.70136 6.81861 6.92194 7.03712 7.16517 7.18970 7.35583 7.51382 7.74461 8.07003 8.11848 8.33162 8.65964 9.00547 9.53811 11.00018 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.038437 B = 0.008524 C = 0.007911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.286942 B = 3284.149352 C = 3538.734746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.211 3.789 3 H 0.028 0.972 4 C -0.534 4.534 5 H 0.054 0.946 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.889 3.111 9 H -0.282 1.282 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.671 5.671 13 C 0.093 3.907 14 C -0.166 4.166 15 C 0.028 3.972 16 N -0.499 5.499 17 C 0.039 3.961 18 C 0.036 3.964 19 C -0.154 4.154 20 C -0.105 4.105 21 H 0.074 0.926 22 H 0.009 0.991 23 H 0.026 0.974 24 H 0.261 0.739 25 H 0.334 0.666 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.556 1.388 -9.440 11.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.103 3.897 3 H 0.045 0.955 4 C -0.573 4.573 5 H 0.073 0.927 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.717 3.283 9 H -0.208 1.208 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.300 5.300 13 C -0.002 4.002 14 C -0.207 4.207 15 C -0.101 4.101 16 N -0.221 5.221 17 C -0.090 4.090 18 C -0.093 4.093 19 C -0.194 4.194 20 C -0.143 4.143 21 H 0.093 0.907 22 H 0.028 0.972 23 H 0.046 0.954 24 H 0.071 0.929 25 H 0.151 0.849 26 H 0.085 0.915 27 H 0.095 0.905 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.356 1.432 -10.084 11.508 hybrid contribution 0.421 0.010 2.222 2.261 sum 5.778 1.442 -7.862 9.863 Atomic orbital electron populations 1.21696 0.98047 0.99691 0.98532 1.19111 0.92204 0.93870 0.84499 0.95466 1.21689 1.31592 1.12567 0.91488 0.92743 1.24911 0.94875 0.94913 0.98921 1.69897 1.36412 1.22768 1.23418 0.86639 0.78554 0.80139 0.82933 1.20810 1.21181 1.19932 1.60752 1.35446 1.05333 1.28496 1.22573 0.90726 0.93619 0.93243 1.23897 0.95406 1.02876 0.98505 1.23455 0.97648 1.00637 0.88378 1.66471 1.24359 1.12826 1.18394 1.23506 0.90817 0.97311 0.97390 1.22545 0.98342 0.91295 0.97118 1.22266 0.98414 0.98966 0.99718 1.21789 0.96728 0.95314 1.00423 0.90697 0.97178 0.95445 0.92948 0.84855 0.91484 0.90488 0.90900 0.91749 0.90312 0.90583 0.91043 0.91105 0.91988 0.91425 0.92122 0.91197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.00 9.20 37.16 0.34 -2.65 16 2 C 0.21 5.15 1.86 -68.87 -0.13 5.02 16 3 H 0.03 0.73 5.74 -51.93 -0.30 0.43 16 4 C -0.53 -14.17 8.24 -34.44 -0.28 -14.45 16 5 H 0.05 1.43 7.39 -52.48 -0.39 1.04 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 7 N -0.89 -24.99 11.39 55.43 0.63 -24.36 16 8 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 11 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 12 N -0.67 -13.96 6.31 -91.46 -0.58 -14.54 16 13 C 0.09 1.66 0.97 -128.81 -0.12 1.53 16 14 C -0.17 -2.99 4.77 -23.86 -0.11 -3.11 16 15 C 0.03 0.42 6.25 -1.27 -0.01 0.41 16 16 N -0.50 -7.38 6.07 -227.44 -1.38 -8.76 16 17 C 0.04 0.60 6.20 -1.55 -0.01 0.59 16 18 C 0.04 0.47 5.84 -3.41 -0.02 0.45 16 19 C -0.15 -2.18 5.52 -26.66 -0.15 -2.33 16 20 C -0.10 -1.78 4.96 -26.12 -0.13 -1.91 16 21 H 0.07 2.01 6.25 -51.93 -0.32 1.68 16 22 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 23 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 25 H 0.33 6.94 7.91 -39.29 -0.31 6.63 16 26 H 0.07 1.30 6.80 -51.93 -0.35 0.95 16 27 H 0.08 1.54 7.80 -51.93 -0.40 1.14 16 28 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.06 0.90 6.94 -51.93 -0.36 0.54 16 30 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 31 H 0.08 1.14 7.63 -51.93 -0.40 0.75 16 32 H 0.07 0.88 7.84 -51.93 -0.41 0.48 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 1.00 5.38 -51.93 -0.28 0.72 16 36 H 0.06 1.01 8.06 -51.93 -0.42 0.59 16 37 H 0.07 1.36 6.65 -51.93 -0.35 1.02 16 LS Contribution 275.29 15.07 4.15 4.15 Total: -1.00 -27.10 275.29 -8.87 -35.97 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -5.96 Total: 6.25 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: -0.72 Total: -14.74 kcal Atomic # 7 Polarization: -46.34 SS G_CDS: -1.33 Total: -47.67 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -27.10 -8.87 -35.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714901881.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.383 kcal (2) G-P(sol) polarization free energy of solvation -27.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds