Wall clock time and date at job start Mon Mar 30 2020 02:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47184 * 2 1 4 4 C 1.50698 * 109.47100 * 119.99657 * 2 1 3 5 5 H 1.08004 * 119.99675 * 119.99957 * 4 2 1 6 6 C 1.37877 * 120.00204 * 300.00084 * 4 2 1 7 7 N 1.31512 * 120.00207 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00213 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47526 * 89.99465 * 8 6 4 10 10 H 1.48493 * 109.47086 * 209.99803 * 8 6 4 11 11 H 1.48502 * 109.46751 * 329.99727 * 8 6 4 12 12 N 1.46898 * 109.46952 * 239.99496 * 2 1 3 13 13 C 1.46904 * 111.00010 * 129.39870 * 12 2 1 14 14 C 1.54992 * 113.20104 * 57.51647 * 13 12 2 15 15 C 1.56386 * 103.65681 * 147.04641 * 14 13 12 16 16 N 1.48233 * 106.91825 * 1.06699 * 15 14 13 17 17 C 1.48809 * 105.17677 * 332.48155 * 16 15 14 18 18 C 1.47673 * 108.91614 * 88.13458 * 16 15 14 19 19 C 1.52987 * 109.28093 * 312.91750 * 18 16 15 20 20 C 1.53149 * 110.09585 * 304.78773 * 19 18 16 21 21 H 1.08999 * 109.47209 * 305.94195 * 1 2 3 22 22 H 1.09000 * 109.47453 * 65.93812 * 1 2 3 23 23 H 1.09002 * 109.47065 * 185.94407 * 1 2 3 24 24 H 0.96995 * 120.00802 * 180.02562 * 7 6 4 25 25 H 1.00896 * 111.00327 * 253.34717 * 12 2 1 26 26 H 1.08997 * 110.38093 * 265.30217 * 14 13 12 27 27 H 1.09000 * 110.37889 * 27.66384 * 14 13 12 28 28 H 1.09006 * 109.94043 * 241.67095 * 15 14 13 29 29 H 1.08998 * 109.91236 * 120.45011 * 15 14 13 30 30 H 1.09000 * 111.68315 * 284.21929 * 17 16 15 31 31 H 1.08995 * 110.18165 * 160.56063 * 17 16 15 32 32 H 1.09006 * 109.50181 * 192.97965 * 18 16 15 33 33 H 1.08999 * 109.50152 * 72.86162 * 18 16 15 34 34 H 1.09005 * 109.36833 * 184.59171 * 19 18 16 35 35 H 1.09007 * 109.36862 * 64.97860 * 19 18 16 36 36 H 1.08997 * 109.63325 * 294.28617 * 20 19 18 37 37 H 1.08998 * 109.79307 * 173.79435 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2392 2.4827 7 7 0.9435 0.8303 2.6034 8 14 2.3225 -1.1193 4.0080 9 1 3.6305 -0.5439 4.4119 10 1 1.3445 -0.9487 5.1123 11 1 2.4879 -2.5652 3.7123 12 7 2.0196 -0.6926 -1.1994 13 6 3.0158 0.1220 -1.9079 14 6 4.2314 0.5042 -1.0255 15 6 5.4240 0.5424 -2.0364 16 7 4.8665 0.2271 -3.3733 17 6 3.6697 -0.6162 -3.1074 18 6 4.4123 1.4797 -4.0101 19 6 3.5865 2.2862 -3.0060 20 6 2.4338 1.4337 -2.4675 21 1 -0.3633 0.6032 0.8320 22 1 -0.3634 0.4190 -0.9383 23 1 -0.3633 -1.0222 0.1064 24 1 0.7095 1.1620 3.4843 25 1 2.3946 -1.5996 -0.9654 26 1 4.0812 1.4862 -0.5771 27 1 4.3899 -0.2471 -0.2519 28 1 6.1707 -0.2017 -1.7587 29 1 5.8725 1.5358 -2.0441 30 1 3.9471 -1.6342 -2.8337 31 1 3.0081 -0.6140 -3.9736 32 1 3.7989 1.2441 -4.8798 33 1 5.2779 2.0641 -4.3220 34 1 3.1825 3.1710 -3.4982 35 1 4.2249 2.5952 -2.1783 36 1 1.7359 1.2098 -3.2742 37 1 1.9157 1.9723 -1.6740 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714901881.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:20 Heat of formation + Delta-G solvation = -12.866177 kcal Electronic energy + Delta-G solvation = -16677.312792 eV Core-core repulsion = 14260.215806 eV Total energy + Delta-G solvation = -2417.096985 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.77856 -37.28601 -34.44140 -33.02018 -31.83979 -30.31149 -28.51245 -27.15086 -25.16688 -23.60428 -22.39893 -20.97784 -19.78344 -18.69352 -17.21261 -16.91046 -16.73499 -15.73697 -15.34574 -14.70383 -14.40645 -14.13074 -13.81021 -13.55358 -13.50637 -13.32601 -13.07358 -12.88312 -12.62430 -12.45523 -12.34296 -12.16443 -12.04090 -11.74555 -11.65019 -11.42362 -11.26999 -10.93460 -10.51632 -9.42504 -9.04823 -8.11047 -6.27674 1.36716 1.38826 1.47935 2.38523 3.09193 3.14184 3.42127 3.81242 3.92849 4.01190 4.14955 4.23569 4.26701 4.45416 4.57516 4.64276 4.70972 4.87491 4.91011 4.94262 4.96642 5.08315 5.12645 5.14177 5.23386 5.29287 5.30443 5.44348 5.49773 5.66913 5.81547 6.01428 6.03830 6.14225 6.41169 6.80583 7.03971 7.42589 8.90673 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.038437 B = 0.008524 C = 0.007911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.286942 B = 3284.149352 C = 3538.734746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.221 3.779 3 H 0.000 1.000 4 C -0.544 4.544 5 H 0.053 0.947 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.951 3.049 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.268 1.268 12 N -0.668 5.668 13 C 0.082 3.918 14 C -0.161 4.161 15 C 0.038 3.962 16 N -0.496 5.496 17 C 0.048 3.952 18 C 0.037 3.963 19 C -0.148 4.148 20 C -0.102 4.102 21 H 0.050 0.950 22 H 0.022 0.978 23 H 0.023 0.977 24 H 0.261 0.739 25 H 0.333 0.667 26 H 0.044 0.956 27 H 0.050 0.950 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.796 1.037 -10.795 12.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.113 3.887 3 H 0.018 0.982 4 C -0.583 4.583 5 H 0.071 0.929 6 C -0.182 4.182 7 N -0.554 5.554 8 Si 0.777 3.223 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.193 1.193 12 N -0.297 5.297 13 C -0.012 4.012 14 C -0.202 4.202 15 C -0.091 4.091 16 N -0.217 5.217 17 C -0.081 4.081 18 C -0.091 4.091 19 C -0.187 4.187 20 C -0.140 4.140 21 H 0.069 0.931 22 H 0.041 0.959 23 H 0.042 0.958 24 H 0.070 0.930 25 H 0.151 0.849 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.106 0.894 32 H 0.104 0.896 33 H 0.112 0.888 34 H 0.100 0.900 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 6.608 1.077 -11.458 13.271 hybrid contribution 0.020 0.150 2.611 2.615 sum 6.628 1.227 -8.848 11.123 Atomic orbital electron populations 1.21551 0.98358 0.98899 0.98168 1.18824 0.91889 0.92496 0.85501 0.98223 1.21974 1.31343 1.12511 0.92487 0.92867 1.25660 0.95155 0.95620 1.01780 1.70023 1.37441 1.23984 1.23962 0.85664 0.77952 0.79223 0.79449 1.20459 1.20964 1.19293 1.60662 1.36939 1.05408 1.26690 1.22760 0.90221 0.94250 0.93938 1.23767 0.97263 1.00587 0.98623 1.23394 0.96302 1.01877 0.87559 1.66492 1.23724 1.13681 1.17755 1.23445 0.91053 0.97231 0.96366 1.22662 0.99247 0.90441 0.96795 1.22216 0.97273 0.99330 0.99840 1.21761 0.97875 0.94930 0.99462 0.93080 0.95883 0.95817 0.92990 0.84937 0.93718 0.93129 0.90136 0.90202 0.90212 0.89389 0.89599 0.88829 0.90006 0.92353 0.91551 0.94632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.61 9.20 71.98 0.66 -4.95 16 2 C 0.22 11.09 1.86 44.17 0.08 11.17 16 3 H 0.00 0.00 5.74 -2.39 -0.01 -0.02 16 4 C -0.54 -29.33 8.24 25.60 0.21 -29.12 16 5 H 0.05 2.82 7.39 -2.91 -0.02 2.80 16 6 C 0.02 0.96 5.30 84.65 0.45 1.41 16 7 N -0.91 -52.69 11.39 21.45 0.24 -52.45 16 8 Si 0.95 43.50 29.54 68.60 2.03 45.53 16 9 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 11 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 12 N -0.67 -27.96 6.31 -443.28 -2.80 -30.76 16 13 C 0.08 2.90 0.97 5.34 0.01 2.91 16 14 C -0.16 -5.84 4.77 32.45 0.15 -5.69 16 15 C 0.04 1.06 6.25 87.23 0.54 1.61 16 16 N -0.50 -13.16 6.07 -873.50 -5.30 -18.46 16 17 C 0.05 1.40 6.20 86.72 0.54 1.94 16 18 C 0.04 0.83 5.84 86.15 0.50 1.34 16 19 C -0.15 -3.86 5.52 30.64 0.17 -3.70 16 20 C -0.10 -3.43 4.96 30.99 0.15 -3.28 16 21 H 0.05 2.81 6.25 -2.39 -0.01 2.79 16 22 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 23 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 25 H 0.33 13.89 7.91 -89.70 -0.71 13.18 16 26 H 0.04 1.78 6.80 -2.39 -0.02 1.77 16 27 H 0.05 2.07 7.80 -2.39 -0.02 2.05 16 28 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 29 H 0.08 2.02 6.94 -2.39 -0.02 2.01 16 30 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.09 2.38 7.63 -2.39 -0.02 2.36 16 32 H 0.09 1.75 7.84 -2.38 -0.02 1.74 16 33 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 35 H 0.06 1.65 5.38 -2.38 -0.01 1.63 16 36 H 0.07 2.12 8.06 -2.39 -0.02 2.10 16 37 H 0.03 1.42 6.65 -2.39 -0.02 1.40 16 Total: -1.00 -58.08 275.29 -2.01 -60.09 By element: Atomic # 1 Polarization: 22.07 SS G_CDS: 0.34 Total: 22.41 kcal Atomic # 6 Polarization: -29.83 SS G_CDS: 3.47 Total: -26.36 kcal Atomic # 7 Polarization: -93.82 SS G_CDS: -7.85 Total: -101.67 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -58.08 -2.01 -60.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714901881.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.221 kcal (2) G-P(sol) polarization free energy of solvation -58.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds