Wall clock time and date at job start Mon Mar 30 2020 03:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46908 * 111.00132 * 2 1 4 4 C 1.50701 * 109.46805 * 293.95434 * 3 2 1 5 5 H 1.07995 * 120.00138 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99651 * 180.02562 * 4 3 2 7 7 N 1.31516 * 120.00154 * 359.97438 * 6 4 3 8 8 Si 1.86806 * 119.99642 * 180.02562 * 6 4 3 9 9 H 1.48493 * 109.47429 * 359.97438 * 8 6 4 10 10 H 1.48506 * 109.46896 * 119.99894 * 8 6 4 11 11 H 1.48499 * 109.46646 * 239.99651 * 8 6 4 12 12 C 1.46895 * 110.99977 * 123.95395 * 2 1 3 13 13 C 1.52998 * 109.47373 * 80.76973 * 12 2 1 14 14 C 1.56247 * 116.69042 * 180.12104 * 13 12 2 15 15 C 1.54657 * 103.21411 * 159.89691 * 14 13 12 16 16 N 1.49520 * 105.28325 * 0.66074 * 15 14 13 17 17 C 1.49519 * 105.92740 * 71.26009 * 16 15 14 18 18 C 1.54653 * 105.28459 * 288.73847 * 17 16 15 19 19 C 1.50469 * 102.03716 * 324.84893 * 16 15 14 20 20 H 1.09007 * 109.47034 * 303.09110 * 1 2 3 21 21 H 1.08997 * 109.46900 * 63.09157 * 1 2 3 22 22 H 1.08994 * 109.47449 * 183.09374 * 1 2 3 23 23 H 1.08994 * 109.46924 * 53.95011 * 3 2 1 24 24 H 1.08995 * 109.46973 * 173.95413 * 3 2 1 25 25 H 0.96991 * 119.99723 * 179.97438 * 7 6 4 26 26 H 1.09003 * 109.47384 * 320.76667 * 12 2 1 27 27 H 1.09000 * 109.47220 * 200.77086 * 12 2 1 28 28 H 1.08999 * 110.67177 * 278.32908 * 14 13 12 29 29 H 1.08998 * 110.66923 * 41.46757 * 14 13 12 30 30 H 1.09001 * 110.28444 * 241.70863 * 15 14 13 31 31 H 1.09001 * 110.36304 * 119.65203 * 15 14 13 32 32 H 1.09000 * 110.28734 * 169.78512 * 17 16 15 33 33 H 1.09001 * 110.35700 * 47.72996 * 17 16 15 34 34 H 1.08997 * 110.67217 * 240.90583 * 18 17 16 35 35 H 1.09004 * 110.81194 * 117.83730 * 18 17 16 36 36 H 1.09002 * 111.90487 * 297.81071 * 19 16 15 37 37 H 1.08994 * 111.91102 * 171.60139 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6369 2.0471 -1.2985 5 1 1.0747 1.5112 -2.0488 6 6 2.0277 3.3491 -1.5289 7 7 2.7129 4.0016 -0.6154 8 14 1.5827 4.1869 -3.1382 9 1 0.8145 3.2446 -3.9909 10 1 0.7561 5.3885 -2.8586 11 1 2.8241 4.5934 -3.8444 12 6 1.9954 -0.7660 1.1375 13 6 1.9622 -2.2592 0.8061 14 6 2.4856 -3.2347 1.9087 15 6 1.8542 -4.5893 1.5110 16 7 1.0722 -4.3098 0.2677 17 6 2.0829 -4.0792 -0.8097 18 6 2.7213 -2.7089 -0.4834 19 6 0.5633 -2.9170 0.5236 20 1 -0.3633 0.5611 0.8610 21 1 -0.3633 0.4651 -0.9164 22 1 -0.3634 -1.0261 0.0555 23 1 1.5611 1.9274 0.8308 24 1 3.0797 1.3444 0.1082 25 1 2.9881 4.9173 -0.7778 26 1 1.3825 -0.5756 2.0186 27 1 3.0227 -0.4608 1.3368 28 1 3.5736 -3.2952 1.8840 29 1 2.1389 -2.9232 2.8941 30 1 1.1931 -4.9447 2.3013 31 1 2.6322 -5.3260 1.3103 32 1 1.5958 -4.0466 -1.7843 33 1 2.8406 -4.8627 -0.7927 34 1 2.5518 -2.0023 -1.2958 35 1 3.7877 -2.8159 -0.2845 36 1 -0.0889 -2.8763 1.3960 37 1 0.0839 -2.4908 -0.3576 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715532338.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:25 Heat of formation + Delta-G solvation = 29.619175 kcal Electronic energy + Delta-G solvation = -16160.276506 eV Core-core repulsion = 13745.021824 eV Total energy + Delta-G solvation = -2415.254682 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.62523 -36.33624 -32.63432 -30.77144 -30.38721 -28.25660 -26.83293 -26.35517 -23.36069 -22.24852 -20.79405 -20.33078 -18.34957 -16.34904 -15.94767 -15.22872 -15.06510 -14.80243 -14.06422 -13.90682 -13.04015 -12.87201 -12.57902 -12.03413 -11.91771 -11.74458 -11.66143 -11.44355 -11.06952 -11.03741 -10.91113 -10.62818 -10.54928 -10.28510 -10.09135 -9.97484 -9.71690 -9.17129 -8.79033 -8.44168 -7.22264 -6.02989 -4.04038 3.30675 3.38127 3.43022 4.08827 4.41564 4.62677 4.69666 5.05524 5.12483 5.26724 5.32417 5.35799 5.40563 5.53041 5.69685 5.81801 5.88147 5.88848 5.95943 6.02150 6.07271 6.13186 6.18845 6.29192 6.40651 6.46994 6.58741 6.73977 6.80657 6.82887 7.28854 7.34989 7.80894 8.08976 8.20990 8.55735 9.04231 9.60361 11.08052 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.049295 B = 0.006359 C = 0.006171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.876863 B = 4402.495049 C = 4536.301998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.536 5.536 3 C 0.193 3.807 4 C -0.504 4.504 5 H 0.064 0.936 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.284 1.284 12 C 0.089 3.911 13 C -0.084 4.084 14 C -0.146 4.146 15 C 0.013 3.987 16 N -0.475 5.475 17 C 0.012 3.988 18 C -0.136 4.136 19 C 0.014 3.986 20 H 0.011 0.989 21 H 0.070 0.930 22 H 0.056 0.944 23 H -0.010 1.010 24 H 0.029 0.971 25 H 0.260 0.740 26 H 0.029 0.971 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.089 0.911 35 H 0.060 0.940 36 H 0.076 0.924 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.365 -13.853 3.677 14.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.260 5.260 3 C 0.068 3.932 4 C -0.543 4.543 5 H 0.082 0.918 6 C -0.147 4.147 7 N -0.540 5.540 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.210 1.210 12 C -0.041 4.041 13 C -0.086 4.086 14 C -0.185 4.185 15 C -0.116 4.116 16 N -0.195 5.195 17 C -0.116 4.116 18 C -0.174 4.174 19 C -0.114 4.114 20 H 0.029 0.971 21 H 0.089 0.911 22 H 0.074 0.926 23 H 0.007 0.993 24 H 0.047 0.953 25 H 0.070 0.930 26 H 0.047 0.953 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.108 0.892 35 H 0.078 0.922 36 H 0.095 0.905 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.634 -14.471 3.095 14.888 hybrid contribution 0.336 1.642 0.213 1.689 sum -1.298 -12.829 3.308 13.312 Atomic orbital electron populations 1.22500 0.89044 0.99656 1.00909 1.61958 1.06820 1.17522 1.39653 1.19771 0.95226 0.81623 0.96600 1.21201 1.34573 0.96866 1.01669 0.91825 1.24996 0.95346 0.97388 0.96972 1.69967 1.38548 1.11418 1.34038 0.86455 0.78144 0.79327 0.83576 1.19663 1.21135 1.21040 1.21421 1.00026 0.90161 0.92445 1.23631 0.95446 0.94727 0.94840 1.23248 1.00606 0.95610 0.99076 1.23532 0.97160 0.96820 0.94056 1.69980 1.22551 1.22935 1.04000 1.23569 0.94679 0.96746 0.96652 1.23116 0.98630 0.96832 0.98843 1.24727 0.96643 0.88083 1.01959 0.97070 0.91137 0.92594 0.99253 0.95328 0.93012 0.95278 0.91304 0.91403 0.91641 0.90578 0.91129 0.90288 0.91422 0.89241 0.92161 0.90524 0.88461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 9.03 60.06 0.54 1.07 16 2 N -0.54 -11.25 4.18 -244.37 -1.02 -12.27 16 3 C 0.19 4.99 4.68 -4.97 -0.02 4.97 16 4 C -0.50 -14.10 8.56 -34.44 -0.29 -14.40 16 5 H 0.06 1.76 7.10 -52.49 -0.37 1.39 16 6 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 7 N -0.90 -26.79 13.29 55.43 0.74 -26.05 16 8 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 9 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 C 0.09 1.57 5.12 -3.83 -0.02 1.55 16 13 C -0.08 -1.24 1.29 -148.77 -0.19 -1.43 16 14 C -0.15 -1.81 6.04 -24.12 -0.15 -1.96 16 15 C 0.01 0.16 6.61 -1.49 -0.01 0.15 16 16 N -0.47 -6.43 6.94 -222.06 -1.54 -7.98 16 17 C 0.01 0.16 6.61 -1.49 -0.01 0.15 16 18 C -0.14 -2.00 5.95 -24.12 -0.14 -2.14 16 19 C 0.01 0.20 4.90 0.43 0.00 0.20 16 20 H 0.01 0.21 8.11 -51.93 -0.42 -0.21 16 21 H 0.07 1.45 6.95 -51.93 -0.36 1.09 16 22 H 0.06 0.91 4.13 -51.93 -0.21 0.69 16 23 H -0.01 -0.29 8.10 -51.93 -0.42 -0.71 16 24 H 0.03 0.79 7.80 -51.93 -0.40 0.39 16 25 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 26 H 0.03 0.50 7.92 -51.93 -0.41 0.09 16 27 H 0.07 1.26 7.64 -51.93 -0.40 0.87 16 28 H 0.07 0.81 7.82 -51.93 -0.41 0.40 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.07 0.75 7.70 -51.93 -0.40 0.36 16 32 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.07 0.79 7.70 -51.93 -0.40 0.39 16 34 H 0.09 1.54 7.77 -51.93 -0.40 1.14 16 35 H 0.06 0.85 7.82 -51.93 -0.41 0.45 16 36 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.10 1.48 6.21 -51.93 -0.32 1.16 16 LS Contribution 283.14 15.07 4.27 4.27 Total: -1.00 -29.10 283.14 -9.14 -38.24 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -6.17 Total: -2.42 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: -0.39 Total: -10.41 kcal Atomic # 7 Polarization: -44.47 SS G_CDS: -1.83 Total: -46.30 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.10 -9.14 -38.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715532338.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.855 kcal (2) G-P(sol) polarization free energy of solvation -29.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds