Wall clock time and date at job start Mon Mar 30 2020 03:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46908 * 111.00132 * 2 1 4 4 C 1.50701 * 109.46805 * 293.95434 * 3 2 1 5 5 H 1.07995 * 120.00138 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99651 * 180.02562 * 4 3 2 7 7 N 1.31516 * 120.00154 * 359.97438 * 6 4 3 8 8 Si 1.86806 * 119.99642 * 180.02562 * 6 4 3 9 9 H 1.48493 * 109.47429 * 359.97438 * 8 6 4 10 10 H 1.48506 * 109.46896 * 119.99894 * 8 6 4 11 11 H 1.48499 * 109.46646 * 239.99651 * 8 6 4 12 12 C 1.46895 * 110.99977 * 123.95395 * 2 1 3 13 13 C 1.52998 * 109.47373 * 80.76973 * 12 2 1 14 14 C 1.56247 * 116.69042 * 180.12104 * 13 12 2 15 15 C 1.54657 * 103.21411 * 159.89691 * 14 13 12 16 16 N 1.49520 * 105.28325 * 0.66074 * 15 14 13 17 17 C 1.49519 * 105.92740 * 71.26009 * 16 15 14 18 18 C 1.54653 * 105.28459 * 288.73847 * 17 16 15 19 19 C 1.50469 * 102.03716 * 324.84893 * 16 15 14 20 20 H 1.09007 * 109.47034 * 303.09110 * 1 2 3 21 21 H 1.08997 * 109.46900 * 63.09157 * 1 2 3 22 22 H 1.08994 * 109.47449 * 183.09374 * 1 2 3 23 23 H 1.08994 * 109.46924 * 53.95011 * 3 2 1 24 24 H 1.08995 * 109.46973 * 173.95413 * 3 2 1 25 25 H 0.96991 * 119.99723 * 179.97438 * 7 6 4 26 26 H 1.09003 * 109.47384 * 320.76667 * 12 2 1 27 27 H 1.09000 * 109.47220 * 200.77086 * 12 2 1 28 28 H 1.08999 * 110.67177 * 278.32908 * 14 13 12 29 29 H 1.08998 * 110.66923 * 41.46757 * 14 13 12 30 30 H 1.09001 * 110.28444 * 241.70863 * 15 14 13 31 31 H 1.09001 * 110.36304 * 119.65203 * 15 14 13 32 32 H 1.09000 * 110.28734 * 169.78512 * 17 16 15 33 33 H 1.09001 * 110.35700 * 47.72996 * 17 16 15 34 34 H 1.08997 * 110.67217 * 240.90583 * 18 17 16 35 35 H 1.09004 * 110.81194 * 117.83730 * 18 17 16 36 36 H 1.09002 * 111.90487 * 297.81071 * 19 16 15 37 37 H 1.08994 * 111.91102 * 171.60139 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6369 2.0471 -1.2985 5 1 1.0747 1.5112 -2.0488 6 6 2.0277 3.3491 -1.5289 7 7 2.7129 4.0016 -0.6154 8 14 1.5827 4.1869 -3.1382 9 1 0.8145 3.2446 -3.9909 10 1 0.7561 5.3885 -2.8586 11 1 2.8241 4.5934 -3.8444 12 6 1.9954 -0.7660 1.1375 13 6 1.9622 -2.2592 0.8061 14 6 2.4856 -3.2347 1.9087 15 6 1.8542 -4.5893 1.5110 16 7 1.0722 -4.3098 0.2677 17 6 2.0829 -4.0792 -0.8097 18 6 2.7213 -2.7089 -0.4834 19 6 0.5633 -2.9170 0.5236 20 1 -0.3633 0.5611 0.8610 21 1 -0.3633 0.4651 -0.9164 22 1 -0.3634 -1.0261 0.0555 23 1 1.5611 1.9274 0.8308 24 1 3.0797 1.3444 0.1082 25 1 2.9881 4.9173 -0.7778 26 1 1.3825 -0.5756 2.0186 27 1 3.0227 -0.4608 1.3368 28 1 3.5736 -3.2952 1.8840 29 1 2.1389 -2.9232 2.8941 30 1 1.1931 -4.9447 2.3013 31 1 2.6322 -5.3260 1.3103 32 1 1.5958 -4.0466 -1.7843 33 1 2.8406 -4.8627 -0.7927 34 1 2.5518 -2.0023 -1.2958 35 1 3.7877 -2.8159 -0.2845 36 1 -0.0889 -2.8763 1.3960 37 1 0.0839 -2.4908 -0.3576 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715532338.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:25 Heat of formation + Delta-G solvation = 8.659995 kcal Electronic energy + Delta-G solvation = -16161.185365 eV Core-core repulsion = 13745.021824 eV Total energy + Delta-G solvation = -2416.163541 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.74198 -38.03612 -34.73178 -32.08458 -31.45406 -29.71041 -28.49355 -27.87283 -25.20464 -23.32319 -22.24300 -21.73029 -19.57141 -18.45174 -17.13276 -16.73282 -16.35204 -16.26414 -15.72423 -15.54861 -14.66177 -14.25253 -13.85869 -13.62472 -13.42120 -13.06500 -12.96994 -12.89530 -12.74308 -12.59595 -12.42043 -12.12289 -12.06260 -11.83127 -11.60837 -11.29128 -11.19956 -10.94741 -10.62803 -9.87247 -8.98524 -8.21246 -6.31080 1.40269 1.40909 1.54552 2.39635 2.98240 3.11484 3.27360 3.59888 3.77318 4.00590 4.17835 4.24841 4.30994 4.39354 4.48480 4.57802 4.62945 4.73898 4.79746 4.83810 4.88280 4.93196 4.99217 5.03078 5.07648 5.12741 5.18582 5.24607 5.30011 5.46529 5.63403 5.67576 5.79113 6.05105 6.33635 6.64971 6.85996 7.38917 8.90167 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.049295 B = 0.006359 C = 0.006171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.876863 B = 4402.495049 C = 4536.301998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.539 5.539 3 C 0.208 3.792 4 C -0.520 4.520 5 H 0.063 0.937 6 C 0.000 4.000 7 N -0.936 5.936 8 Si 0.969 3.031 9 H -0.263 1.263 10 H -0.278 1.278 11 H -0.279 1.279 12 C 0.090 3.910 13 C -0.090 4.090 14 C -0.138 4.138 15 C 0.016 3.984 16 N -0.479 5.479 17 C 0.018 3.982 18 C -0.134 4.134 19 C 0.017 3.983 20 H 0.006 0.994 21 H 0.054 0.946 22 H 0.089 0.911 23 H -0.040 1.040 24 H 0.002 0.998 25 H 0.264 0.736 26 H 0.035 0.965 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.087 0.913 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.874 -15.458 3.428 15.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.262 5.262 3 C 0.082 3.918 4 C -0.558 4.558 5 H 0.081 0.919 6 C -0.198 4.198 7 N -0.577 5.577 8 Si 0.794 3.206 9 H -0.187 1.187 10 H -0.204 1.204 11 H -0.204 1.204 12 C -0.039 4.039 13 C -0.092 4.092 14 C -0.177 4.177 15 C -0.112 4.112 16 N -0.199 5.199 17 C -0.111 4.111 18 C -0.173 4.173 19 C -0.111 4.111 20 H 0.025 0.975 21 H 0.072 0.928 22 H 0.108 0.892 23 H -0.022 1.022 24 H 0.020 0.980 25 H 0.073 0.927 26 H 0.053 0.947 27 H 0.074 0.926 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.108 0.892 31 H 0.104 0.896 32 H 0.095 0.905 33 H 0.105 0.895 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.105 0.895 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.150 -16.104 2.853 16.495 hybrid contribution 0.512 2.106 0.339 2.193 sum -1.638 -13.998 3.192 14.451 Atomic orbital electron populations 1.22505 0.87755 1.01547 0.99828 1.61884 1.07972 1.14752 1.41629 1.19418 0.93464 0.84007 0.94932 1.21497 1.34599 0.97436 1.02310 0.91916 1.25919 0.95054 0.98102 1.00677 1.70091 1.39525 1.11908 1.36180 0.85335 0.78064 0.78208 0.79016 1.18736 1.20403 1.20426 1.21435 0.99092 0.91818 0.91528 1.23509 0.96596 0.92967 0.96154 1.23204 1.01012 0.95122 0.98374 1.23607 0.97612 0.96510 0.93500 1.69969 1.23068 1.21968 1.04923 1.23551 0.94920 0.96037 0.96553 1.23066 0.99156 0.97291 0.97777 1.24645 0.96172 0.88552 1.01726 0.97514 0.92764 0.89248 1.02202 0.98008 0.92714 0.94654 0.92626 0.90839 0.90814 0.89217 0.89557 0.90537 0.89456 0.92331 0.91715 0.89478 0.89817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.22 9.03 127.69 1.15 2.37 16 2 N -0.54 -23.10 4.18 -927.06 -3.88 -26.97 16 3 C 0.21 11.20 4.68 85.56 0.40 11.61 16 4 C -0.52 -29.72 8.56 25.60 0.22 -29.50 16 5 H 0.06 3.52 7.10 -2.91 -0.02 3.50 16 6 C 0.00 0.01 5.46 84.65 0.46 0.47 16 7 N -0.94 -56.86 13.29 21.45 0.28 -56.58 16 8 Si 0.97 44.61 29.54 68.60 2.03 46.64 16 9 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 10 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 11 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 12 C 0.09 3.20 5.12 86.30 0.44 3.64 16 13 C -0.09 -2.54 1.29 -48.47 -0.06 -2.60 16 14 C -0.14 -3.05 6.04 32.29 0.20 -2.86 16 15 C 0.02 0.33 6.61 86.36 0.57 0.90 16 16 N -0.48 -11.64 6.94 -856.48 -5.94 -17.59 16 17 C 0.02 0.44 6.61 86.36 0.57 1.01 16 18 C -0.13 -3.84 5.95 32.29 0.19 -3.64 16 19 C 0.02 0.46 4.90 87.06 0.43 0.88 16 20 H 0.01 0.25 8.11 -2.38 -0.02 0.23 16 21 H 0.05 2.24 6.95 -2.39 -0.02 2.23 16 22 H 0.09 2.82 4.13 -2.39 -0.01 2.81 16 23 H -0.04 -2.32 8.10 -2.39 -0.02 -2.34 16 24 H 0.00 0.11 7.80 -2.39 -0.02 0.09 16 25 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 26 H 0.04 1.21 7.92 -2.39 -0.02 1.19 16 27 H 0.06 2.10 7.64 -2.39 -0.02 2.08 16 28 H 0.07 1.56 7.82 -2.39 -0.02 1.54 16 29 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.09 1.49 7.70 -2.39 -0.02 1.47 16 32 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.09 1.77 7.70 -2.39 -0.02 1.75 16 34 H 0.06 2.03 7.77 -2.39 -0.02 2.01 16 35 H 0.06 1.76 7.82 -2.38 -0.02 1.74 16 36 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.08 2.42 6.21 -2.39 -0.01 2.41 16 Total: -1.00 -62.82 283.14 -1.92 -64.73 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: 1.02 Total: 7.50 kcal Atomic # 6 Polarization: -22.30 SS G_CDS: 4.57 Total: -17.73 kcal Atomic # 7 Polarization: -91.61 SS G_CDS: -9.53 Total: -101.14 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -62.82 -1.92 -64.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715532338.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.393 kcal (2) G-P(sol) polarization free energy of solvation -62.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds