Wall clock time and date at job start Mon Mar 30 2020 02:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46892 * 2 1 4 4 C 1.53002 * 109.47112 * 119.99655 * 2 1 3 5 5 C 1.50700 * 109.46786 * 185.00087 * 4 2 1 6 6 H 1.08001 * 120.00650 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99813 * 179.97438 * 5 4 2 8 8 N 1.31508 * 119.99867 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99816 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47474 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46985 * 120.00332 * 9 7 5 12 12 H 1.48503 * 109.46880 * 239.99993 * 9 7 5 13 13 N 1.46900 * 109.47279 * 240.00222 * 2 1 3 14 14 C 1.46896 * 111.00297 * 84.99661 * 13 2 1 15 15 C 1.56245 * 117.38880 * 296.75334 * 14 13 2 16 16 C 1.54652 * 103.21763 * 200.62996 * 15 14 13 17 17 N 1.49526 * 105.28185 * 359.34100 * 16 15 14 18 18 C 1.49512 * 105.92099 * 288.73909 * 17 16 15 19 19 C 1.54652 * 105.28671 * 71.26239 * 18 17 16 20 20 C 1.50460 * 102.03385 * 35.14894 * 17 16 15 21 21 H 1.09002 * 109.46892 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47546 * 299.99648 * 1 2 3 23 23 H 1.08998 * 109.47528 * 60.00386 * 1 2 3 24 24 H 1.08999 * 109.47008 * 305.00055 * 4 2 1 25 25 H 1.09001 * 109.46665 * 65.00591 * 4 2 1 26 26 H 0.96995 * 120.00254 * 179.97438 * 8 7 5 27 27 H 1.00908 * 110.99564 * 321.04262 * 13 2 1 28 28 H 1.09000 * 110.66981 * 82.19154 * 15 14 13 29 29 H 1.09009 * 110.66754 * 319.06360 * 15 14 13 30 30 H 1.08995 * 110.28214 * 240.39091 * 16 15 14 31 31 H 1.09004 * 110.28518 * 118.28927 * 16 15 14 32 32 H 1.09007 * 110.28265 * 190.21884 * 18 17 16 33 33 H 1.08996 * 110.28447 * 312.21333 * 18 17 16 34 34 H 1.09008 * 110.66908 * 119.08793 * 19 18 17 35 35 H 1.09006 * 110.67381 * 242.22301 * 19 18 17 36 36 H 1.09003 * 111.90905 * 62.19479 * 20 17 16 37 37 H 1.09000 * 111.90655 * 188.39997 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6148 1.3127 6 1 4.0790 -0.0854 0.5396 7 6 4.2304 -1.1924 2.3584 8 7 3.5764 -1.8367 3.3001 9 14 6.0920 -1.0599 2.4374 10 1 6.5836 -0.2897 1.2668 11 1 6.4860 -0.3636 3.6884 12 1 6.6862 -2.4208 2.4201 13 7 2.0197 -0.6924 -1.1995 14 6 2.0824 0.2226 -2.3469 15 6 0.7369 0.8357 -2.8517 16 6 1.0659 1.2664 -4.3001 17 7 2.5025 0.9040 -4.5023 18 6 3.2894 1.8701 -3.6760 19 6 3.0288 1.4580 -2.2084 20 6 2.6219 -0.3640 -3.7012 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.6054 -0.2616 2.1370 25 1 1.7517 -1.7715 1.2056 26 1 4.0607 -2.2434 4.0355 27 1 1.4495 -1.4979 -1.4100 28 1 0.4569 1.6989 -2.2478 29 1 -0.0545 0.0861 -2.8435 30 1 0.9277 2.3414 -4.4153 31 1 0.4368 0.7258 -5.0073 32 1 4.3513 1.7887 -3.9085 33 1 2.9418 2.8881 -3.8515 34 1 3.9600 1.1762 -1.7167 35 1 2.5338 2.2629 -1.6648 36 1 1.9765 -1.1523 -4.0889 37 1 3.6567 -0.6960 -3.6172 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715623494.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:18 Heat of formation + Delta-G solvation = 16.039469 kcal Electronic energy + Delta-G solvation = -16301.980291 eV Core-core repulsion = 13886.136749 eV Total energy + Delta-G solvation = -2415.843543 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.66130 -36.13797 -32.62453 -30.56911 -30.47952 -28.47519 -27.26175 -26.72699 -23.10140 -22.23485 -20.92463 -19.78712 -18.46288 -16.46901 -15.83715 -15.74881 -15.23981 -14.44901 -13.99307 -13.33042 -13.04896 -12.81122 -12.62707 -12.14806 -12.08795 -11.66015 -11.59677 -11.50197 -11.29947 -11.14517 -10.95754 -10.60165 -10.53095 -10.28033 -10.08325 -9.94419 -9.27277 -8.99542 -8.81250 -8.25466 -7.66386 -5.87490 -3.84995 3.38350 3.45823 3.50559 4.03870 4.46129 4.57122 4.68959 4.87293 5.12244 5.19756 5.29102 5.32911 5.49497 5.63298 5.68391 5.75609 5.81065 5.85338 5.88559 5.94922 5.98920 6.07321 6.08068 6.23880 6.41948 6.44151 6.61165 6.64774 6.73726 7.01377 7.55872 7.68848 8.00350 8.04417 8.15930 8.60234 9.20554 9.76383 11.24759 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.033201 B = 0.008072 C = 0.006934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.140635 B = 3467.947970 C = 4037.154281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.092 3.908 3 H 0.066 0.934 4 C 0.032 3.968 5 C -0.486 4.486 6 H 0.059 0.941 7 C 0.049 3.951 8 N -0.904 5.904 9 Si 0.888 3.112 10 H -0.274 1.274 11 H -0.288 1.288 12 H -0.287 1.287 13 N -0.625 5.625 14 C 0.083 3.917 15 C -0.180 4.180 16 C 0.015 3.985 17 N -0.470 5.470 18 C 0.014 3.986 19 C -0.138 4.138 20 C 0.019 3.981 21 H 0.050 0.950 22 H 0.054 0.946 23 H 0.046 0.954 24 H 0.017 0.983 25 H 0.016 0.984 26 H 0.256 0.744 27 H 0.336 0.664 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.064 0.936 36 H 0.080 0.920 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.083 5.683 -12.757 14.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.017 4.017 3 H 0.084 0.916 4 C -0.005 4.005 5 C -0.525 4.525 6 H 0.077 0.923 7 C -0.150 4.150 8 N -0.545 5.545 9 Si 0.717 3.283 10 H -0.199 1.199 11 H -0.214 1.214 12 H -0.213 1.213 13 N -0.253 5.253 14 C -0.012 4.012 15 C -0.221 4.221 16 C -0.115 4.115 17 N -0.190 5.190 18 C -0.115 4.115 19 C -0.177 4.177 20 C -0.111 4.111 21 H 0.069 0.931 22 H 0.073 0.927 23 H 0.065 0.935 24 H 0.035 0.965 25 H 0.035 0.965 26 H 0.066 0.934 27 H 0.154 0.846 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.083 0.917 36 H 0.099 0.901 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.156 5.649 -13.159 14.911 hybrid contribution -0.314 0.198 0.930 1.002 sum -4.470 5.847 -12.229 14.273 Atomic orbital electron populations 1.22761 0.99511 1.01303 1.01099 1.21786 0.89913 0.98311 0.91732 0.91622 1.19124 0.96314 0.95385 0.89692 1.21177 0.91842 1.32736 1.06734 0.92310 1.25011 0.97972 0.95954 0.96064 1.69968 1.35085 1.37088 1.12400 0.86589 0.86522 0.77577 0.77588 1.19860 1.21447 1.21294 1.60350 1.56887 1.07115 1.00923 1.23886 0.92809 0.92707 0.91790 1.23988 0.99751 1.01292 0.97101 1.23512 0.91334 1.00842 0.95773 1.70000 1.05339 1.03232 1.40471 1.23558 0.99673 0.96626 0.91683 1.23144 1.01056 0.96784 0.96710 1.24464 1.02378 0.93343 0.90886 0.93131 0.92652 0.93517 0.96467 0.96517 0.93402 0.84581 0.91366 0.91667 0.91107 0.90497 0.90074 0.91100 0.89870 0.91683 0.90147 0.89046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.12 9.03 37.16 0.34 -2.78 16 2 C 0.09 1.81 2.38 -67.71 -0.16 1.65 16 3 H 0.07 1.35 6.65 -51.93 -0.35 1.00 16 4 C 0.03 0.81 4.65 -27.88 -0.13 0.69 16 5 C -0.49 -13.62 8.84 -34.44 -0.30 -13.92 16 6 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 7 C 0.05 1.42 5.46 -17.82 -0.10 1.32 16 8 N -0.90 -27.47 13.29 55.43 0.74 -26.73 16 9 Si 0.89 22.16 29.54 -169.99 -5.02 17.14 16 10 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 13 N -0.63 -11.34 6.18 -87.40 -0.54 -11.88 16 14 C 0.08 1.26 1.45 -125.88 -0.18 1.07 16 15 C -0.18 -2.33 4.19 -24.12 -0.10 -2.44 16 16 C 0.01 0.18 6.61 -1.49 -0.01 0.17 16 17 N -0.47 -6.26 6.94 -222.08 -1.54 -7.80 16 18 C 0.01 0.18 6.61 -1.50 -0.01 0.17 16 19 C -0.14 -2.09 5.26 -24.12 -0.13 -2.22 16 20 C 0.02 0.26 6.69 0.43 0.00 0.26 16 21 H 0.05 0.82 8.13 -51.93 -0.42 0.40 16 22 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 23 H 0.05 0.68 4.93 -51.93 -0.26 0.42 16 24 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 27 H 0.34 5.71 8.56 -39.29 -0.34 5.38 16 28 H 0.07 0.91 7.18 -51.93 -0.37 0.53 16 29 H 0.06 0.82 7.64 -51.92 -0.40 0.43 16 30 H 0.07 0.77 7.69 -51.93 -0.40 0.37 16 31 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.07 0.82 7.69 -51.93 -0.40 0.42 16 34 H 0.08 1.45 8.14 -51.92 -0.42 1.02 16 35 H 0.06 0.98 7.39 -51.93 -0.38 0.59 16 36 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 285.49 15.07 4.30 4.30 Total: -1.00 -29.67 285.49 -9.08 -38.76 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -6.24 Total: 2.24 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: -0.79 Total: -16.03 kcal Atomic # 7 Polarization: -45.07 SS G_CDS: -1.34 Total: -46.41 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -29.67 -9.08 -38.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715623494.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.798 kcal (2) G-P(sol) polarization free energy of solvation -29.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds