Wall clock time and date at job start Mon Mar 30 2020 02:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46892 * 2 1 4 4 C 1.53002 * 109.47112 * 119.99655 * 2 1 3 5 5 C 1.50700 * 109.46786 * 185.00087 * 4 2 1 6 6 H 1.08001 * 120.00650 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99813 * 179.97438 * 5 4 2 8 8 N 1.31508 * 119.99867 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99816 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47474 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46985 * 120.00332 * 9 7 5 12 12 H 1.48503 * 109.46880 * 239.99993 * 9 7 5 13 13 N 1.46900 * 109.47279 * 240.00222 * 2 1 3 14 14 C 1.46896 * 111.00297 * 84.99661 * 13 2 1 15 15 C 1.56245 * 117.38880 * 296.75334 * 14 13 2 16 16 C 1.54652 * 103.21763 * 200.62996 * 15 14 13 17 17 N 1.49526 * 105.28185 * 359.34100 * 16 15 14 18 18 C 1.49512 * 105.92099 * 288.73909 * 17 16 15 19 19 C 1.54652 * 105.28671 * 71.26239 * 18 17 16 20 20 C 1.50460 * 102.03385 * 35.14894 * 17 16 15 21 21 H 1.09002 * 109.46892 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47546 * 299.99648 * 1 2 3 23 23 H 1.08998 * 109.47528 * 60.00386 * 1 2 3 24 24 H 1.08999 * 109.47008 * 305.00055 * 4 2 1 25 25 H 1.09001 * 109.46665 * 65.00591 * 4 2 1 26 26 H 0.96995 * 120.00254 * 179.97438 * 8 7 5 27 27 H 1.00908 * 110.99564 * 321.04262 * 13 2 1 28 28 H 1.09000 * 110.66981 * 82.19154 * 15 14 13 29 29 H 1.09009 * 110.66754 * 319.06360 * 15 14 13 30 30 H 1.08995 * 110.28214 * 240.39091 * 16 15 14 31 31 H 1.09004 * 110.28518 * 118.28927 * 16 15 14 32 32 H 1.09007 * 110.28265 * 190.21884 * 18 17 16 33 33 H 1.08996 * 110.28447 * 312.21333 * 18 17 16 34 34 H 1.09008 * 110.66908 * 119.08793 * 19 18 17 35 35 H 1.09006 * 110.67381 * 242.22301 * 19 18 17 36 36 H 1.09003 * 111.90905 * 62.19479 * 20 17 16 37 37 H 1.09000 * 111.90655 * 188.39997 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6148 1.3127 6 1 4.0790 -0.0854 0.5396 7 6 4.2304 -1.1924 2.3584 8 7 3.5764 -1.8367 3.3001 9 14 6.0920 -1.0599 2.4374 10 1 6.5836 -0.2897 1.2668 11 1 6.4860 -0.3636 3.6884 12 1 6.6862 -2.4208 2.4201 13 7 2.0197 -0.6924 -1.1995 14 6 2.0824 0.2226 -2.3469 15 6 0.7369 0.8357 -2.8517 16 6 1.0659 1.2664 -4.3001 17 7 2.5025 0.9040 -4.5023 18 6 3.2894 1.8701 -3.6760 19 6 3.0288 1.4580 -2.2084 20 6 2.6219 -0.3640 -3.7012 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.6054 -0.2616 2.1370 25 1 1.7517 -1.7715 1.2056 26 1 4.0607 -2.2434 4.0355 27 1 1.4495 -1.4979 -1.4100 28 1 0.4569 1.6989 -2.2478 29 1 -0.0545 0.0861 -2.8435 30 1 0.9277 2.3414 -4.4153 31 1 0.4368 0.7258 -5.0073 32 1 4.3513 1.7887 -3.9085 33 1 2.9418 2.8881 -3.8515 34 1 3.9600 1.1762 -1.7167 35 1 2.5338 2.2629 -1.6648 36 1 1.9765 -1.1523 -4.0889 37 1 3.6567 -0.6960 -3.6172 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715623494.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:17 Heat of formation + Delta-G solvation = -6.014536 kcal Electronic energy + Delta-G solvation = -16302.936625 eV Core-core repulsion = 13886.136749 eV Total energy + Delta-G solvation = -2416.799876 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.77636 -37.68850 -34.71577 -32.00632 -31.60835 -29.62593 -29.15446 -27.92846 -25.06477 -23.38268 -22.02227 -21.34671 -19.71545 -18.44512 -17.31858 -16.87516 -16.50267 -16.24602 -15.53410 -14.76844 -14.37014 -14.28366 -13.81828 -13.71248 -13.52274 -13.23596 -12.97876 -12.87201 -12.62640 -12.58185 -12.44888 -12.23161 -12.10045 -11.99402 -11.43893 -11.19016 -11.11187 -10.97782 -10.49779 -9.94737 -9.05816 -8.10403 -6.14785 1.39621 1.40836 1.53347 2.46498 2.95347 3.16569 3.27491 3.58114 3.75528 4.05999 4.15404 4.20904 4.22545 4.36084 4.46753 4.51597 4.62975 4.65664 4.66968 4.85301 4.89304 4.93852 4.98762 5.02084 5.09569 5.20896 5.24837 5.29891 5.49412 5.53286 5.71182 5.72146 5.89967 6.32865 6.49146 6.70393 6.99566 7.50853 9.02100 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.033201 B = 0.008072 C = 0.006934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.140635 B = 3467.947970 C = 4037.154281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.106 3.894 3 H 0.057 0.943 4 C 0.036 3.964 5 C -0.494 4.494 6 H 0.056 0.944 7 C -0.007 4.007 8 N -0.941 5.941 9 Si 0.955 3.045 10 H -0.266 1.266 11 H -0.282 1.282 12 H -0.283 1.283 13 N -0.645 5.645 14 C 0.073 3.927 15 C -0.170 4.170 16 C 0.018 3.982 17 N -0.472 5.472 18 C 0.020 3.980 19 C -0.139 4.139 20 C 0.023 3.977 21 H 0.052 0.948 22 H 0.052 0.948 23 H 0.074 0.926 24 H -0.009 1.009 25 H -0.009 1.009 26 H 0.258 0.742 27 H 0.341 0.659 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.052 0.948 35 H 0.063 0.937 36 H 0.092 0.908 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.327 6.578 -14.623 16.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.003 4.003 3 H 0.075 0.925 4 C -0.001 4.001 5 C -0.533 4.533 6 H 0.074 0.926 7 C -0.203 4.203 8 N -0.584 5.584 9 Si 0.781 3.219 10 H -0.190 1.190 11 H -0.208 1.208 12 H -0.209 1.209 13 N -0.273 5.273 14 C -0.021 4.021 15 C -0.211 4.211 16 C -0.111 4.111 17 N -0.192 5.192 18 C -0.109 4.109 19 C -0.178 4.178 20 C -0.106 4.106 21 H 0.071 0.929 22 H 0.071 0.929 23 H 0.092 0.908 24 H 0.009 0.991 25 H 0.009 0.991 26 H 0.067 0.933 27 H 0.160 0.840 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.104 0.896 31 H 0.110 0.890 32 H 0.100 0.900 33 H 0.108 0.892 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.111 0.889 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.404 6.555 -15.048 16.994 hybrid contribution -0.242 -0.084 1.504 1.526 sum -4.646 6.472 -13.544 15.713 Atomic orbital electron populations 1.22630 0.96786 1.01887 1.02328 1.21373 0.91963 0.96776 0.90197 0.92485 1.19010 0.95170 0.94220 0.91699 1.21497 0.93337 1.32072 1.06378 0.92609 1.25859 1.02819 0.95779 0.95843 1.70094 1.36978 1.38189 1.13125 0.85541 0.80788 0.77675 0.77865 1.19048 1.20796 1.20897 1.60123 1.57466 1.08099 1.01617 1.23919 0.94565 0.92473 0.91171 1.23871 0.98271 1.01214 0.97793 1.23579 0.90393 1.02048 0.95047 1.70001 1.06450 1.02761 1.40022 1.23547 1.00014 0.97521 0.89790 1.23133 0.99605 0.96915 0.98157 1.24412 1.01821 0.94130 0.90265 0.92885 0.92889 0.90765 0.99116 0.99068 0.93298 0.83987 0.91421 0.90866 0.89621 0.89006 0.89955 0.89156 0.92956 0.91797 0.88917 0.90389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.68 9.03 71.98 0.65 -5.03 16 2 C 0.11 4.21 2.38 44.92 0.11 4.32 16 3 H 0.06 2.34 6.65 -2.39 -0.02 2.33 16 4 C 0.04 1.91 4.65 29.85 0.14 2.04 16 5 C -0.49 -28.27 8.84 25.60 0.23 -28.04 16 6 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 7 C -0.01 -0.43 5.46 84.66 0.46 0.03 16 8 N -0.94 -58.41 13.29 21.45 0.28 -58.12 16 9 Si 0.96 45.98 29.54 68.60 2.03 48.00 16 10 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 12 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 13 N -0.64 -23.16 6.18 -430.42 -2.66 -25.82 16 14 C 0.07 2.11 1.45 7.24 0.01 2.12 16 15 C -0.17 -3.91 4.19 32.28 0.14 -3.78 16 16 C 0.02 0.37 6.61 86.35 0.57 0.94 16 17 N -0.47 -11.26 6.94 -856.51 -5.94 -17.20 16 18 C 0.02 0.49 6.61 86.36 0.57 1.06 16 19 C -0.14 -4.10 5.26 32.28 0.17 -3.93 16 20 C 0.02 0.61 6.69 87.06 0.58 1.19 16 21 H 0.05 1.66 8.13 -2.39 -0.02 1.64 16 22 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 23 H 0.07 1.96 4.93 -2.39 -0.01 1.95 16 24 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 25 H -0.01 -0.52 8.14 -2.39 -0.02 -0.53 16 26 H 0.26 15.15 8.31 -92.71 -0.77 14.37 16 27 H 0.34 11.40 8.56 -89.69 -0.77 10.63 16 28 H 0.07 1.58 7.18 -2.39 -0.02 1.57 16 29 H 0.07 1.59 7.64 -2.38 -0.02 1.57 16 30 H 0.09 1.51 7.69 -2.39 -0.02 1.49 16 31 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 32 H 0.08 1.93 8.14 -2.38 -0.02 1.92 16 33 H 0.09 1.81 7.69 -2.39 -0.02 1.79 16 34 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 35 H 0.06 1.86 7.39 -2.38 -0.02 1.84 16 36 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -64.01 285.49 -2.40 -66.41 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: 0.27 Total: 15.80 kcal Atomic # 6 Polarization: -32.69 SS G_CDS: 3.62 Total: -29.07 kcal Atomic # 7 Polarization: -92.83 SS G_CDS: -8.32 Total: -101.14 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.00 kcal Total: -64.01 -2.40 -66.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715623494.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.391 kcal (2) G-P(sol) polarization free energy of solvation -64.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds