Wall clock time and date at job start Mon Mar 30 2020 03:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.49036 * 110.99853 * 2 1 4 4 C 1.53157 * 103.47046 * 146.47784 * 3 2 1 5 5 H 1.09006 * 110.90261 * 76.36292 * 4 3 2 6 6 C 1.51843 * 116.23972 * 204.81544 * 4 3 2 7 7 C 1.53913 * 106.69165 * 173.64665 * 6 4 3 8 8 C 1.52543 * 111.50501 * 304.67000 * 7 6 4 9 9 N 1.47768 * 111.87292 * 52.96910 * 8 7 6 10 10 C 1.46895 * 111.00001 * 179.26306 * 9 8 7 11 11 C 1.50702 * 109.46770 * 290.75350 * 10 9 8 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99942 * 179.72214 * 11 10 9 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10 16 16 H 1.48504 * 109.47196 * 60.00645 * 15 13 11 17 17 H 1.48504 * 109.46887 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47679 * 300.00280 * 15 13 11 19 19 C 1.45091 * 108.49781 * 301.48305 * 9 8 7 20 20 H 1.09008 * 109.69770 * 308.17637 * 19 9 8 21 21 C 1.48639 * 111.00222 * 120.49261 * 2 1 3 22 22 H 1.09001 * 109.46995 * 299.50636 * 1 2 3 23 23 H 1.09000 * 109.47237 * 59.50636 * 1 2 3 24 24 H 1.09002 * 109.47324 * 179.51355 * 1 2 3 25 25 H 1.09000 * 110.61994 * 264.97287 * 3 2 1 26 26 H 1.08992 * 110.62278 * 27.82588 * 3 2 1 27 27 H 1.08990 * 110.01147 * 292.94782 * 6 4 3 28 28 H 1.09008 * 110.00221 * 54.36105 * 6 4 3 29 29 H 1.08997 * 109.07187 * 65.19500 * 7 6 4 30 30 H 1.09007 * 109.06947 * 184.21468 * 7 6 4 31 31 H 1.09001 * 108.99901 * 292.35518 * 8 7 6 32 32 H 1.08999 * 109.00225 * 173.58668 * 8 7 6 33 33 H 1.09004 * 109.47258 * 170.75674 * 10 9 8 34 34 H 1.08994 * 109.47601 * 50.75266 * 10 9 8 35 35 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 36 36 H 1.08996 * 110.16983 * 121.87350 * 21 2 1 37 37 H 1.09006 * 110.16769 * 0.07908 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0031 1.3914 0.0000 4 6 3.2901 1.2795 0.8226 5 1 4.0871 0.8206 0.2373 6 6 3.7663 2.5520 1.5006 7 6 4.9634 2.1602 2.3851 8 6 4.5970 1.0463 3.3607 9 7 3.9984 -0.1151 2.6706 10 6 3.6693 -1.1823 3.6249 11 6 4.9415 -1.7872 4.1604 12 1 5.8988 -1.4157 3.8256 13 6 4.8834 -2.8107 5.0824 14 7 3.7178 -3.2628 5.4904 15 14 6.4604 -3.5552 5.7520 16 1 7.2541 -2.5020 6.4347 17 1 6.1277 -4.6308 6.7203 18 1 7.2530 -4.1250 4.6329 19 6 2.8142 0.3312 1.9610 20 1 2.1628 0.8795 2.6416 21 6 2.0017 -0.7041 1.1957 22 1 -0.3633 0.5062 0.8944 23 1 -0.3634 0.5215 -0.8855 24 1 -0.3634 -1.0276 -0.0087 25 1 2.2241 1.7177 -1.0162 26 1 1.2984 2.0730 0.4762 27 1 4.0783 3.2795 0.7515 28 1 2.9683 2.9676 2.1160 29 1 5.7808 1.8217 1.7485 30 1 5.2901 3.0337 2.9495 31 1 3.8838 1.4327 4.0889 32 1 5.4967 0.7230 3.8844 33 1 3.0847 -1.9524 3.1214 34 1 3.0896 -0.7668 4.4490 35 1 3.6769 -3.9832 6.1388 36 1 2.6408 -1.5326 0.8903 37 1 1.1812 -1.0695 1.8133 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722635094.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:18 Heat of formation + Delta-G solvation = 7.708119 kcal Electronic energy + Delta-G solvation = -16278.940163 eV Core-core repulsion = 13862.735346 eV Total energy + Delta-G solvation = -2416.204817 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.84493 -36.27534 -33.70725 -32.07022 -30.69309 -28.03475 -26.58813 -26.02145 -23.37453 -21.69516 -21.09570 -19.89344 -19.26227 -16.34775 -15.46137 -15.29324 -14.72888 -14.42171 -14.14406 -13.89697 -13.54959 -13.03490 -12.55794 -12.48970 -12.17979 -11.87405 -11.72488 -11.34601 -11.16785 -10.86420 -10.81252 -10.63780 -10.45277 -10.40356 -10.13536 -10.02627 -9.45217 -9.10105 -8.42210 -8.14068 -7.29070 -6.01819 -4.03032 3.34253 3.38190 3.41339 4.16408 4.43352 4.66235 4.88756 5.04934 5.31920 5.35763 5.44160 5.47857 5.55947 5.63984 5.68119 5.70176 5.84297 5.93359 5.94594 6.03555 6.14436 6.19156 6.30667 6.38689 6.52990 6.57754 6.73523 6.76717 7.06884 7.25270 7.31047 7.32340 7.82160 8.08048 8.19488 8.57178 9.04253 9.61062 11.09073 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.032787 B = 0.007966 C = 0.006720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.786393 B = 3514.248749 C = 4165.505609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.532 5.532 3 C 0.047 3.953 4 C -0.099 4.099 5 H 0.093 0.907 6 C -0.104 4.104 7 C -0.116 4.116 8 C 0.061 3.939 9 N -0.509 5.509 10 C 0.189 3.811 11 C -0.507 4.507 12 H 0.063 0.937 13 C 0.055 3.945 14 N -0.899 5.899 15 Si 0.898 3.102 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.276 1.276 19 C 0.061 3.939 20 H 0.025 0.975 21 C 0.054 3.946 22 H 0.023 0.977 23 H 0.063 0.937 24 H 0.067 0.933 25 H 0.077 0.923 26 H 0.043 0.957 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.018 0.982 32 H 0.083 0.917 33 H 0.034 0.966 34 H -0.011 1.011 35 H 0.261 0.739 36 H 0.091 0.909 37 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.333 9.925 -8.252 13.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.256 5.256 3 C -0.080 4.080 4 C -0.118 4.118 5 H 0.112 0.888 6 C -0.142 4.142 7 C -0.154 4.154 8 C -0.068 4.068 9 N -0.234 5.234 10 C 0.064 3.936 11 C -0.546 4.546 12 H 0.081 0.919 13 C -0.146 4.146 14 N -0.539 5.539 15 Si 0.726 3.274 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.201 1.201 19 C -0.050 4.050 20 H 0.043 0.957 21 C -0.074 4.074 22 H 0.042 0.958 23 H 0.082 0.918 24 H 0.086 0.914 25 H 0.095 0.905 26 H 0.061 0.939 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.036 0.964 32 H 0.101 0.899 33 H 0.052 0.948 34 H 0.006 0.994 35 H 0.071 0.929 36 H 0.109 0.891 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.922 9.301 -8.919 13.214 hybrid contribution -0.217 0.211 1.896 1.920 sum -3.139 9.511 -7.023 12.233 Atomic orbital electron populations 1.22516 0.88428 1.01901 1.00046 1.64388 1.07389 1.13979 1.39828 1.22821 0.95693 0.89492 1.00038 1.22117 0.97255 0.96364 0.96101 0.88838 1.21411 0.98192 0.96383 0.98243 1.21635 0.97898 0.97719 0.98139 1.22014 1.00163 0.90166 0.94419 1.62584 1.23347 1.08434 1.29014 1.19774 0.96755 0.88364 0.88717 1.21120 0.92836 1.17504 1.23098 0.91912 1.24990 0.96278 0.96803 0.96539 1.69951 1.23747 1.27892 1.32305 0.86561 0.83412 0.78734 0.78697 1.20324 1.21382 1.20128 1.22313 0.92398 0.95291 0.95043 0.95720 1.22501 0.98023 0.97311 0.89532 0.95821 0.91773 0.91417 0.90484 0.93895 0.92147 0.92585 0.91568 0.92324 0.96377 0.89904 0.94843 0.99352 0.92901 0.89095 0.92604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.18 60.06 0.55 0.81 16 2 N -0.53 -8.23 5.51 -239.91 -1.32 -9.55 16 3 C 0.05 0.66 6.34 -2.56 -0.02 0.64 16 4 C -0.10 -1.55 2.72 -89.73 -0.24 -1.79 16 5 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 6 C -0.10 -1.45 5.74 -26.84 -0.15 -1.60 16 7 C -0.12 -1.77 5.97 -26.49 -0.16 -1.93 16 8 C 0.06 1.19 5.16 -3.58 -0.02 1.17 16 9 N -0.51 -11.13 4.73 -227.82 -1.08 -12.20 16 10 C 0.19 4.96 4.60 -4.98 -0.02 4.93 16 11 C -0.51 -14.32 8.53 -34.44 -0.29 -14.61 16 12 H 0.06 1.75 7.33 -52.49 -0.38 1.37 16 13 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 14 N -0.90 -26.84 13.29 55.43 0.74 -26.11 16 15 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 19 C 0.06 1.14 1.88 -67.68 -0.13 1.01 16 20 H 0.02 0.49 7.78 -51.92 -0.40 0.09 16 21 C 0.05 0.97 5.59 -3.25 -0.02 0.95 16 22 H 0.02 0.30 8.11 -51.93 -0.42 -0.12 16 23 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 25 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.04 0.56 7.82 -51.93 -0.41 0.16 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.77 8.00 -51.92 -0.42 0.36 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.02 0.36 8.05 -51.93 -0.42 -0.06 16 32 H 0.08 1.74 7.03 -51.93 -0.37 1.38 16 33 H 0.03 0.93 7.06 -51.93 -0.37 0.56 16 34 H -0.01 -0.32 8.08 -51.93 -0.42 -0.74 16 35 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 36 H 0.09 1.81 8.07 -51.93 -0.42 1.39 16 37 H 0.06 1.02 7.62 -51.93 -0.40 0.62 16 LS Contribution 285.80 15.07 4.31 4.31 Total: -1.00 -29.49 285.80 -9.48 -38.97 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: -6.51 Total: -3.22 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: -0.60 Total: -8.94 kcal Atomic # 7 Polarization: -46.20 SS G_CDS: -1.66 Total: -47.86 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.49 -9.48 -38.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722635094.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.678 kcal (2) G-P(sol) polarization free energy of solvation -29.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds