Wall clock time and date at job start Mon Mar 30 2020 02:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08994 * 109.46916 * 2 1 4 4 C 1.50703 * 109.46879 * 119.99872 * 2 1 3 5 5 H 1.07992 * 120.00061 * 120.00265 * 4 2 1 6 6 C 1.37885 * 119.99610 * 299.99713 * 4 2 1 7 7 N 1.31509 * 120.00185 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99648 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47043 * 90.00014 * 8 6 4 10 10 H 1.48502 * 109.47322 * 210.00054 * 8 6 4 11 11 H 1.48504 * 109.47142 * 329.99962 * 8 6 4 12 12 N 1.46897 * 109.47118 * 239.99686 * 2 1 3 13 13 C 1.48389 * 110.98626 * 185.23802 * 12 2 1 14 14 C 1.53778 * 108.37639 * 180.70537 * 13 12 2 15 15 H 1.09001 * 112.32117 * 187.29000 * 14 13 12 16 16 C 1.54693 * 107.63243 * 311.55561 * 14 13 12 17 17 C 1.54325 * 104.72531 * 87.95522 * 16 14 13 18 18 C 1.54699 * 104.72074 * 0.02562 * 17 16 14 19 19 H 1.08998 * 112.41838 * 148.51053 * 18 17 16 20 20 C 1.46957 * 111.00106 * 59.99908 * 12 2 1 21 21 N 1.48861 * 107.53679 * 63.06346 * 14 13 12 22 22 C 1.46903 * 111.00182 * 169.99602 * 21 14 13 23 23 H 1.08993 * 109.47256 * 300.00342 * 1 2 3 24 24 H 1.09000 * 109.46928 * 60.00680 * 1 2 3 25 25 H 1.09004 * 109.46922 * 180.02562 * 1 2 3 26 26 H 0.96998 * 120.00104 * 179.97438 * 7 6 4 27 27 H 1.08995 * 110.52282 * 60.64145 * 13 12 2 28 28 H 1.08993 * 109.24963 * 300.02445 * 13 12 2 29 29 H 1.09006 * 110.38835 * 329.14518 * 16 14 13 30 30 H 1.08999 * 110.48501 * 206.81706 * 16 14 13 31 31 H 1.09001 * 110.38712 * 241.19380 * 17 16 14 32 32 H 1.08999 * 110.48686 * 118.86075 * 17 16 14 33 33 H 1.09002 * 109.55496 * 59.92667 * 20 12 2 34 34 H 1.08997 * 109.55500 * 299.71986 * 20 12 2 35 35 H 1.08999 * 109.47219 * 173.87870 * 22 21 14 36 36 H 1.09000 * 109.46665 * 293.87775 * 22 21 14 37 37 H 1.09003 * 109.47344 * 53.87518 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9428 0.8298 2.6034 8 14 2.3224 -1.1193 4.0080 9 1 3.6304 -0.5438 4.4119 10 1 1.3443 -0.9487 5.1124 11 1 2.4878 -2.5652 3.7124 12 7 2.0197 -0.6925 -1.1994 13 6 3.4977 -0.8227 -1.1718 14 6 3.9455 -1.5372 -2.4577 15 1 5.0080 -1.7806 -2.4475 16 6 3.0550 -2.7900 -2.6321 17 6 1.8252 -2.2905 -3.4194 18 6 2.0894 -0.7833 -3.6466 19 1 1.6585 -0.4219 -4.5803 20 6 1.5485 -0.0263 -2.4215 21 7 3.5728 -0.6676 -3.6070 22 6 4.1721 -1.1590 -4.8550 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 0.7081 1.1611 3.4843 27 1 3.8142 -1.4011 -0.3039 28 1 3.9451 0.1704 -1.1313 29 1 2.7514 -3.1784 -1.6599 30 1 3.5826 -3.5572 -3.1988 31 1 0.9164 -2.4331 -2.8345 32 1 1.7467 -2.8101 -4.3743 33 1 1.9102 1.0019 -2.4392 34 1 0.4588 -0.0301 -2.4421 35 1 3.7977 -0.5719 -5.6937 36 1 5.2564 -1.0631 -4.7997 37 1 3.9068 -2.2066 -4.9977 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723685708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:57 Heat of formation + Delta-G solvation = 22.324629 kcal Electronic energy + Delta-G solvation = -16699.702838 eV Core-core repulsion = 14284.131841 eV Total energy + Delta-G solvation = -2415.570998 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.10528 -35.67087 -32.56327 -30.91934 -30.77491 -28.99833 -26.05443 -25.43658 -23.47426 -23.01026 -20.15191 -19.75801 -18.23581 -16.29838 -16.08832 -15.02060 -14.55572 -14.15483 -13.95021 -13.38970 -13.20904 -12.77801 -12.35899 -12.13266 -11.92707 -11.85230 -11.53768 -10.96682 -10.94319 -10.68285 -10.55276 -10.38211 -10.33041 -10.06854 -9.91186 -9.81950 -9.57954 -8.77932 -8.38974 -8.21449 -7.02837 -5.97652 -4.01952 3.31952 3.38647 3.42139 4.26672 4.43231 4.98227 5.10334 5.17557 5.32291 5.37094 5.47350 5.63100 5.70002 5.72856 5.88669 5.95970 6.02747 6.12557 6.22893 6.34165 6.48350 6.56196 6.67377 6.76669 6.81754 6.90796 7.10019 7.11886 7.25452 7.36353 7.59646 7.79347 7.87082 8.25438 8.38692 8.67790 9.04967 9.63047 11.09198 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.042452 B = 0.008388 C = 0.007721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.417855 B = 3337.128180 C = 3625.487051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.214 3.786 3 H -0.003 1.003 4 C -0.501 4.501 5 H 0.062 0.938 6 C 0.058 3.942 7 N -0.893 5.893 8 Si 0.894 3.106 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.532 5.532 13 C 0.080 3.920 14 C 0.056 3.944 15 H 0.086 0.914 16 C -0.130 4.130 17 C -0.129 4.129 18 C 0.059 3.941 19 H 0.086 0.914 20 C 0.066 3.934 21 N -0.512 5.512 22 C 0.015 3.985 23 H 0.083 0.917 24 H 0.007 0.993 25 H 0.033 0.967 26 H 0.260 0.740 27 H 0.086 0.914 28 H 0.029 0.971 29 H 0.082 0.918 30 H 0.045 0.955 31 H 0.079 0.921 32 H 0.045 0.955 33 H 0.028 0.972 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.281 -4.375 -11.256 12.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.108 3.892 3 H 0.014 0.986 4 C -0.540 4.540 5 H 0.080 0.920 6 C -0.143 4.143 7 N -0.533 5.533 8 Si 0.723 3.277 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.258 5.258 13 C -0.048 4.048 14 C -0.052 4.052 15 H 0.104 0.896 16 C -0.169 4.169 17 C -0.169 4.169 18 C -0.050 4.050 19 H 0.104 0.896 20 C -0.063 4.063 21 N -0.235 5.235 22 C -0.134 4.134 23 H 0.102 0.898 24 H 0.026 0.974 25 H 0.052 0.948 26 H 0.069 0.931 27 H 0.104 0.896 28 H 0.048 0.952 29 H 0.101 0.899 30 H 0.063 0.937 31 H 0.098 0.902 32 H 0.064 0.936 33 H 0.046 0.954 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 3.199 -4.138 -11.047 12.222 hybrid contribution 0.373 -0.441 0.676 0.890 sum 3.572 -4.579 -10.371 11.886 Atomic orbital electron populations 1.21821 0.97828 0.99460 0.99813 1.19199 0.92172 0.91961 0.85909 0.98571 1.21157 1.30869 1.12164 0.89813 0.91968 1.24931 0.95253 0.95092 0.98980 1.69893 1.36960 1.23115 1.23314 0.86555 0.78451 0.80049 0.82683 1.20842 1.21325 1.19907 1.62333 1.08856 1.52475 1.02117 1.22275 0.89021 0.98613 0.94881 1.23321 0.98120 0.91591 0.92211 0.89608 1.22662 0.95765 0.97256 1.01254 1.22657 1.00020 0.95710 0.98470 1.23252 0.88197 0.95298 0.98246 0.89557 1.22172 0.99207 0.95138 0.89760 1.65666 1.06376 1.48386 1.03060 1.22418 0.99810 0.98220 0.92964 0.89793 0.97399 0.94822 0.93054 0.89587 0.95250 0.89891 0.93657 0.90181 0.93628 0.95416 0.90856 0.92065 0.91961 0.95447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.21 8.74 37.16 0.32 -2.89 16 2 C 0.21 5.42 2.09 -68.86 -0.14 5.27 16 3 H 0.00 -0.09 8.14 -51.93 -0.42 -0.52 16 4 C -0.50 -13.64 7.94 -34.44 -0.27 -13.91 16 5 H 0.06 1.68 6.34 -52.49 -0.33 1.34 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 7 N -0.89 -25.62 11.32 55.43 0.63 -24.99 16 8 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 11 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 12 N -0.53 -11.38 3.50 -225.68 -0.79 -12.17 16 13 C 0.08 1.61 4.75 -2.60 -0.01 1.60 16 14 C 0.06 0.92 3.71 -65.33 -0.24 0.68 16 15 H 0.09 1.28 8.12 -51.93 -0.42 0.85 16 16 C -0.13 -2.03 5.42 -25.15 -0.14 -2.17 16 17 C -0.13 -1.97 5.45 -25.14 -0.14 -2.11 16 18 C 0.06 0.93 3.75 -65.31 -0.24 0.69 16 19 H 0.09 1.21 8.13 -51.93 -0.42 0.79 16 20 C 0.07 1.25 4.67 -3.36 -0.02 1.24 16 21 N -0.51 -8.14 5.36 -220.65 -1.18 -9.32 16 22 C 0.01 0.19 9.48 60.07 0.57 0.76 16 23 H 0.08 2.26 6.07 -51.93 -0.32 1.94 16 24 H 0.01 0.16 6.41 -51.93 -0.33 -0.17 16 25 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 27 H 0.09 1.81 6.31 -51.93 -0.33 1.48 16 28 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.08 1.45 7.80 -51.93 -0.40 1.04 16 30 H 0.04 0.62 7.94 -51.93 -0.41 0.21 16 31 H 0.08 1.33 7.81 -51.93 -0.41 0.93 16 32 H 0.04 0.61 8.05 -51.93 -0.42 0.19 16 33 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 1.37 6.33 -51.93 -0.33 1.04 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.03 0.33 6.69 -51.93 -0.35 -0.01 16 LS Contribution 275.47 15.07 4.15 4.15 Total: -1.00 -28.13 275.47 -8.76 -36.89 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -6.14 Total: -1.56 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: -0.41 Total: -9.32 kcal Atomic # 7 Polarization: -45.14 SS G_CDS: -1.34 Total: -46.48 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -28.13 -8.76 -36.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723685708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.215 kcal (2) G-P(sol) polarization free energy of solvation -28.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds