Wall clock time and date at job start Mon Mar 30 2020 02:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.28017 * 119.99637 * 2 1 4 4 N 1.40098 * 119.99928 * 0.02562 * 3 2 1 5 5 C 1.46500 * 120.00048 * 179.97438 * 4 3 2 6 6 H 1.08998 * 109.46845 * 30.00557 * 5 4 3 7 7 C 1.52997 * 109.47473 * 270.00008 * 5 4 3 8 8 C 1.50706 * 109.47187 * 149.99611 * 5 4 3 9 9 H 1.07998 * 119.99629 * 0.02562 * 8 5 4 10 10 C 1.37875 * 119.99955 * 179.97438 * 8 5 4 11 11 N 1.31510 * 120.00308 * 0.02562 * 10 8 5 12 12 Si 1.86800 * 119.99908 * 180.02562 * 10 8 5 13 13 H 1.48503 * 109.46848 * 60.00326 * 12 10 8 14 14 H 1.48500 * 109.47035 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47237 * 300.00475 * 12 10 8 16 16 C 1.50693 * 120.00380 * 180.02562 * 2 1 3 17 17 C 1.54262 * 110.03281 * 292.90449 * 16 2 1 18 18 C 1.54967 * 104.16229 * 217.13501 * 17 16 2 19 19 C 1.54896 * 102.77475 * 37.89090 * 18 17 16 20 20 C 1.53885 * 110.03330 * 175.68865 * 16 2 1 21 21 H 1.08992 * 109.47607 * 90.00050 * 1 2 3 22 22 H 1.09008 * 109.46878 * 209.99918 * 1 2 3 23 23 H 1.08998 * 109.47417 * 329.99158 * 1 2 3 24 24 H 0.97002 * 120.00235 * 359.97438 * 4 3 2 25 25 H 1.09002 * 109.47153 * 59.99757 * 7 5 4 26 26 H 1.09001 * 109.46832 * 299.99948 * 7 5 4 27 27 H 1.09004 * 109.47261 * 179.97438 * 7 5 4 28 28 H 0.96998 * 120.00365 * 179.97438 * 11 10 8 29 29 H 1.08999 * 110.01859 * 54.30211 * 16 2 1 30 30 H 1.09002 * 110.48716 * 335.78218 * 17 16 2 31 31 H 1.09002 * 110.48568 * 98.43091 * 17 16 2 32 32 H 1.08991 * 110.72114 * 279.57729 * 18 17 16 33 33 H 1.09006 * 110.92323 * 156.29246 * 18 17 16 34 34 H 1.08996 * 110.48411 * 203.40499 * 19 18 17 35 35 H 1.09001 * 110.59646 * 80.81697 * 19 18 17 36 36 H 1.08992 * 110.03079 * 238.57222 * 20 16 2 37 37 H 1.08999 * 110.02880 * 359.94740 * 20 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1470 1.1087 0.0000 4 7 1.4464 2.3219 0.0005 5 6 2.1788 3.5907 0.0011 6 1 3.1311 3.4607 -0.5129 7 6 2.4338 4.0318 1.4437 8 6 1.3643 4.6413 -0.7089 9 1 0.3976 4.3891 -1.1192 10 6 1.8528 5.9245 -0.8339 11 7 3.0297 6.2317 -0.3339 12 14 0.8429 7.2268 -1.7133 13 1 -0.4547 7.4035 -1.0130 14 1 1.5853 8.5129 -1.7129 15 1 0.5953 6.7992 -3.1138 16 6 2.2605 -1.3050 -0.0006 17 6 2.0363 -2.0453 1.3341 18 6 3.4058 -2.7041 1.6370 19 6 4.4153 -1.6288 1.1639 20 6 3.7726 -1.0406 -0.1092 21 1 -0.3634 0.0000 -1.0276 22 1 -0.3633 -0.8901 0.5139 23 1 -0.3634 0.8899 0.5139 24 1 0.4764 2.3219 0.0005 25 1 3.0229 3.2720 1.9573 26 1 1.4813 4.1619 1.9576 27 1 2.9791 4.9757 1.4441 28 1 3.3735 7.1344 -0.4221 29 1 1.9296 -1.9266 -0.8326 30 1 1.7699 -1.3401 2.1214 31 1 1.2627 -2.8052 1.2236 32 1 3.5258 -3.6245 1.0656 33 1 3.5179 -2.8962 2.7041 34 1 5.3770 -2.0852 0.9297 35 1 4.5357 -0.8556 1.9227 36 1 4.1754 -1.5345 -0.9933 37 1 3.9612 0.0317 -0.1623 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771885921.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:27 Heat of formation + Delta-G solvation = 3.918734 kcal Electronic energy + Delta-G solvation = -15569.311093 eV Core-core repulsion = 13152.941956 eV Total energy + Delta-G solvation = -2416.369137 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.76492 -37.74361 -35.91004 -33.43974 -30.85928 -29.72719 -28.67443 -27.84644 -27.19585 -22.74800 -21.64430 -21.37770 -19.90484 -18.36259 -17.09690 -16.77317 -16.46125 -15.93427 -15.43020 -14.89234 -14.54793 -14.36967 -14.05435 -13.68859 -13.17547 -13.15905 -12.88824 -12.73562 -12.32765 -12.20781 -12.13820 -12.06077 -11.85789 -11.81258 -11.67014 -11.40225 -11.23535 -11.08228 -10.57036 -10.47123 -8.46587 -8.16675 -6.34397 1.41474 1.43825 1.51780 1.66779 2.29176 2.55023 3.11142 3.75633 3.83162 3.93746 4.27918 4.42761 4.58252 4.65195 4.68737 4.74100 4.76928 4.87175 4.91413 4.93824 4.97056 5.13779 5.16060 5.19430 5.20146 5.33244 5.44615 5.49498 5.56794 5.63842 5.67324 5.84771 5.95067 6.27733 6.49397 6.90231 7.37986 7.99957 8.87824 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.046020 B = 0.005782 C = 0.005446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.288440 B = 4841.317932 C = 5140.494527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.023 3.977 3 N -0.260 5.260 4 N -0.656 5.656 5 C 0.310 3.690 6 H -0.005 1.005 7 C -0.134 4.134 8 C -0.547 4.547 9 H 0.058 0.942 10 C 0.018 3.982 11 N -0.916 5.916 12 Si 0.971 3.029 13 H -0.268 1.268 14 H -0.280 1.280 15 H -0.273 1.273 16 C -0.020 4.020 17 C -0.108 4.108 18 C -0.116 4.116 19 C -0.123 4.123 20 C -0.131 4.131 21 H 0.073 0.927 22 H 0.097 0.903 23 H 0.046 0.954 24 H 0.369 0.631 25 H 0.014 0.986 26 H 0.027 0.973 27 H 0.067 0.933 28 H 0.267 0.733 29 H 0.101 0.899 30 H 0.049 0.951 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.043 0.957 36 H 0.069 0.931 37 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.812 -16.318 2.157 16.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.172 4.172 3 N -0.068 5.068 4 N -0.395 5.395 5 C 0.206 3.794 6 H 0.013 0.987 7 C -0.193 4.193 8 C -0.586 4.586 9 H 0.076 0.924 10 C -0.182 4.182 11 N -0.554 5.554 12 Si 0.795 3.205 13 H -0.193 1.193 14 H -0.205 1.205 15 H -0.198 1.198 16 C -0.041 4.041 17 C -0.147 4.147 18 C -0.153 4.153 19 C -0.161 4.161 20 C -0.169 4.169 21 H 0.092 0.908 22 H 0.116 0.884 23 H 0.065 0.935 24 H 0.208 0.792 25 H 0.033 0.967 26 H 0.046 0.954 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.119 0.881 30 H 0.068 0.932 31 H 0.110 0.890 32 H 0.103 0.897 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.062 0.938 36 H 0.087 0.913 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.650 -15.566 2.169 15.803 hybrid contribution -1.368 1.048 -0.381 1.765 sum -3.018 -14.519 1.787 14.936 Atomic orbital electron populations 1.21092 0.92549 1.03181 1.02812 1.24780 0.94608 0.93719 1.04055 1.73469 1.29235 0.93460 1.10627 1.48435 1.05466 1.00289 1.85296 1.17985 0.90958 0.78418 0.92071 0.98733 1.22007 0.98741 1.00500 0.98057 1.21504 1.04665 0.95305 1.37176 0.92388 1.25730 0.96172 1.00292 0.96035 1.70016 1.18861 1.20862 1.45652 0.85425 0.78606 0.77607 0.78834 1.19261 1.20519 1.19810 1.20561 0.93687 0.90041 0.99802 1.22385 0.98558 0.98734 0.95041 1.22492 0.93511 0.97918 1.01409 1.22325 0.99158 0.98004 0.96613 1.22228 0.94694 1.01447 0.98539 0.90820 0.88395 0.93537 0.79220 0.96717 0.95403 0.91428 0.92431 0.88101 0.93204 0.89036 0.89653 0.90950 0.90811 0.93830 0.91258 0.92799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.73 9.47 71.23 0.67 -3.05 16 2 C 0.02 0.75 6.29 46.53 0.29 1.05 16 3 N -0.26 -11.11 9.39 -41.21 -0.39 -11.50 16 4 N -0.66 -31.12 5.93 -172.52 -1.02 -32.14 16 5 C 0.31 17.05 3.23 44.25 0.14 17.19 16 6 H -0.01 -0.33 8.14 -2.39 -0.02 -0.34 16 7 C -0.13 -7.07 9.29 71.98 0.67 -6.40 16 8 C -0.55 -30.94 8.74 25.60 0.22 -30.72 16 9 H 0.06 3.18 7.79 -2.91 -0.02 3.16 16 10 C 0.02 0.99 5.30 84.65 0.45 1.44 16 11 N -0.92 -53.32 11.32 21.45 0.24 -53.08 16 12 Si 0.97 43.52 29.54 68.60 2.03 45.55 16 13 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 14 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 15 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 16 C -0.02 -0.52 3.24 -10.82 -0.04 -0.55 16 17 C -0.11 -2.21 5.99 31.69 0.19 -2.02 16 18 C -0.12 -2.11 6.91 31.91 0.22 -1.89 16 19 C -0.12 -2.92 6.83 31.67 0.22 -2.71 16 20 C -0.13 -3.67 6.39 31.32 0.20 -3.47 16 21 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 22 H 0.10 2.01 7.80 -2.38 -0.02 1.99 16 23 H 0.05 1.41 6.31 -2.39 -0.02 1.40 16 24 H 0.37 16.36 6.31 -213.32 -1.35 15.01 16 25 H 0.01 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.07 3.83 6.07 -2.38 -0.01 3.81 16 28 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 29 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.05 1.20 7.85 -2.39 -0.02 1.18 16 31 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 34 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.05 1.97 6.25 -2.39 -0.01 1.96 16 Total: -1.00 -63.57 295.43 3.79 -59.78 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: -0.31 Total: 22.53 kcal Atomic # 6 Polarization: -34.38 SS G_CDS: 3.24 Total: -31.14 kcal Atomic # 7 Polarization: -95.55 SS G_CDS: -1.17 Total: -96.72 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -63.57 3.79 -59.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771885921.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.702 kcal (2) G-P(sol) polarization free energy of solvation -63.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds