Wall clock time and date at job start Mon Mar 30 2020 02:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47130 * 2 1 4 4 C 1.50701 * 109.47292 * 239.99857 * 2 1 3 5 5 H 1.07996 * 120.00258 * 245.36962 * 4 2 1 6 6 C 1.37875 * 119.99850 * 65.37036 * 4 2 1 7 7 N 1.31512 * 119.99956 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99830 * 179.72651 * 6 4 2 9 9 H 1.48496 * 109.47033 * 90.00279 * 8 6 4 10 10 H 1.48500 * 109.46789 * 209.99945 * 8 6 4 11 11 H 1.48498 * 109.47186 * 329.99732 * 8 6 4 12 12 N 1.46906 * 109.47139 * 119.99982 * 2 1 3 13 13 C 1.48714 * 110.99733 * 26.82216 * 12 2 1 14 14 C 1.55009 * 103.34625 * 201.15454 * 13 12 2 15 15 C 1.54793 * 102.93842 * 36.97922 * 14 13 12 16 16 C 1.47115 * 110.99798 * 269.65402 * 12 2 1 17 17 C 1.53869 * 110.64744 * 266.18239 * 16 12 2 18 18 C 1.55107 * 102.73895 * 98.80387 * 17 16 12 19 19 N 1.48607 * 103.32141 * 36.81155 * 18 17 16 20 20 C 1.48111 * 105.84299 * 321.22421 * 19 18 17 21 21 H 1.08993 * 109.47305 * 288.72807 * 1 2 3 22 22 H 1.09002 * 109.47301 * 48.72840 * 1 2 3 23 23 H 1.08996 * 109.47155 * 168.72759 * 1 2 3 24 24 H 0.97002 * 119.99865 * 179.97438 * 7 6 4 25 25 H 1.08998 * 110.64894 * 319.61472 * 13 12 2 26 26 H 1.09001 * 110.64491 * 82.68856 * 13 12 2 27 27 H 1.08994 * 110.72068 * 155.34539 * 14 13 12 28 28 H 1.09007 * 110.71719 * 278.44266 * 14 13 12 29 29 H 1.09000 * 110.36800 * 96.92713 * 15 14 13 30 30 H 1.08997 * 110.36381 * 219.14386 * 15 14 13 31 31 H 1.09000 * 110.75294 * 217.11133 * 17 16 12 32 32 H 1.08996 * 110.75866 * 340.49159 * 17 16 12 33 33 H 1.08993 * 110.65420 * 278.34801 * 18 17 16 34 34 H 1.09002 * 110.78707 * 155.32842 * 18 17 16 35 35 H 1.00903 * 110.99542 * 200.69890 * 19 18 17 36 36 H 1.08996 * 109.99663 * 265.84326 * 20 19 18 37 37 H 1.08999 * 110.02818 * 144.52931 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5799 -1.6363 -1.1337 6 6 1.7930 -0.1784 -2.4797 7 7 1.1259 0.9488 -2.5975 8 14 2.4224 -1.0550 -4.0045 9 1 1.3925 -2.0098 -4.4870 10 1 2.7085 -0.0572 -5.0664 11 1 3.6663 -1.7948 -3.6721 12 7 2.0197 -0.6925 1.1995 13 6 1.0292 -1.6928 1.6790 14 6 1.4211 -1.9008 3.1642 15 6 1.8453 -0.4814 3.6129 16 6 2.2032 0.2498 2.3142 17 6 3.6550 0.7573 2.3623 18 6 3.5589 2.1358 1.6579 19 7 2.2439 2.6602 2.1096 20 6 1.3293 1.4954 2.1296 21 1 -0.3633 0.3299 0.9732 22 1 -0.3634 0.6779 -0.7724 23 1 -0.3633 -1.0078 -0.2009 24 1 0.9578 1.3234 -3.4764 25 1 0.0160 -1.2985 1.6006 26 1 1.1240 -2.6250 1.1223 27 1 0.5660 -2.2490 3.7436 28 1 2.2532 -2.5999 3.2492 29 1 1.0185 0.0206 4.1154 30 1 2.7122 -0.5350 4.2714 31 1 3.9899 0.8727 3.3931 32 1 4.3166 0.0879 1.8125 33 1 3.5735 2.0159 0.5747 34 1 4.3663 2.7927 1.9815 35 1 1.9052 3.3751 1.4832 36 1 0.7850 1.4326 1.1874 37 1 0.6284 1.5853 2.9595 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885655057.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:56 Heat of formation + Delta-G solvation = 13.821564 kcal Electronic energy + Delta-G solvation = -16981.495003 eV Core-core repulsion = 14565.555285 eV Total energy + Delta-G solvation = -2415.939718 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.60706 -37.08771 -35.66980 -33.29284 -30.90461 -29.77192 -29.07382 -27.46414 -25.01783 -23.28888 -22.35662 -21.38917 -19.50372 -18.27510 -17.62600 -16.89611 -16.17433 -16.05939 -15.52514 -15.27952 -14.51482 -14.03797 -13.95677 -13.42194 -13.19094 -13.02991 -12.97939 -12.83251 -12.58192 -12.42733 -12.32896 -12.18271 -11.97000 -11.63080 -11.61508 -11.29478 -11.13912 -10.90889 -10.48104 -9.41950 -8.90113 -8.12719 -6.20642 1.38258 1.39607 1.49991 2.41010 3.16697 3.26218 3.54553 3.71066 3.85161 3.98822 4.21202 4.36389 4.41882 4.54703 4.64117 4.72177 4.76241 4.81108 4.84584 4.95403 5.01831 5.02994 5.07019 5.17554 5.17707 5.26136 5.36536 5.42649 5.50794 5.65211 5.75507 5.80447 6.24670 6.34760 6.51358 6.74073 6.92205 7.47942 8.93882 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.029800 B = 0.010573 C = 0.009309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.364794 B = 2647.647802 C = 3007.266576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.207 3.793 3 H 0.021 0.979 4 C -0.510 4.510 5 H 0.047 0.953 6 C 0.012 3.988 7 N -0.922 5.922 8 Si 0.953 3.047 9 H -0.277 1.277 10 H -0.284 1.284 11 H -0.272 1.272 12 N -0.511 5.511 13 C 0.025 3.975 14 C -0.115 4.115 15 C -0.108 4.108 16 C 0.077 3.923 17 C -0.098 4.098 18 C 0.037 3.963 19 N -0.664 5.664 20 C -0.005 4.005 21 H 0.042 0.958 22 H 0.043 0.957 23 H 0.032 0.968 24 H 0.260 0.740 25 H 0.048 0.952 26 H 0.059 0.941 27 H 0.087 0.913 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.064 0.936 33 H 0.015 0.985 34 H 0.093 0.907 35 H 0.332 0.668 36 H 0.060 0.940 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.880 -1.139 10.877 10.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.099 3.901 3 H 0.039 0.961 4 C -0.548 4.548 5 H 0.066 0.934 6 C -0.186 4.186 7 N -0.562 5.562 8 Si 0.779 3.221 9 H -0.203 1.203 10 H -0.210 1.210 11 H -0.197 1.197 12 N -0.234 5.234 13 C -0.103 4.103 14 C -0.153 4.153 15 C -0.147 4.147 16 C -0.014 4.014 17 C -0.136 4.136 18 C -0.092 4.092 19 N -0.292 5.292 20 C -0.135 4.135 21 H 0.060 0.940 22 H 0.062 0.938 23 H 0.051 0.949 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.078 0.922 27 H 0.105 0.895 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.103 0.897 31 H 0.109 0.891 32 H 0.083 0.917 33 H 0.033 0.967 34 H 0.111 0.889 35 H 0.146 0.854 36 H 0.078 0.922 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.471 -1.240 11.307 11.469 hybrid contribution -0.799 0.056 -2.271 2.408 sum 0.672 -1.184 9.036 9.138 Atomic orbital electron populations 1.22337 1.00130 0.99699 0.98431 1.19242 0.89873 0.93426 0.87522 0.96114 1.21400 1.34089 1.08030 0.91320 0.93433 1.25627 0.95669 0.95745 1.01572 1.70026 1.41940 1.20241 1.24030 0.85634 0.78770 0.78315 0.79380 1.20252 1.20984 1.19676 1.64900 1.42673 1.12837 1.03008 1.23411 0.95060 0.96065 0.95754 1.22529 1.01670 0.96922 0.94147 1.22436 1.02003 0.95226 0.94992 1.22199 0.95230 0.91490 0.92471 1.22447 0.95601 0.94762 1.00823 1.23074 0.92738 0.96801 0.96599 1.63237 1.03075 1.10346 1.52566 1.23888 0.96469 0.91121 1.02025 0.93958 0.93843 0.94882 0.93144 0.93357 0.92230 0.89451 0.90935 0.90647 0.89746 0.89130 0.91691 0.96653 0.88850 0.85352 0.92175 0.90455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.95 6.40 71.98 0.46 -6.49 16 2 C 0.21 10.23 1.73 44.17 0.08 10.30 16 3 H 0.02 1.14 4.72 -2.38 -0.01 1.13 16 4 C -0.51 -28.47 8.75 25.60 0.22 -28.25 16 5 H 0.05 2.72 7.81 -2.91 -0.02 2.70 16 6 C 0.01 0.67 5.33 84.65 0.45 1.13 16 7 N -0.92 -53.15 11.86 21.45 0.25 -52.90 16 8 Si 0.95 44.52 29.54 68.60 2.03 46.55 16 9 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 10 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 11 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 12 N -0.51 -21.43 4.74 -814.01 -3.86 -25.29 16 13 C 0.02 0.91 5.78 86.64 0.50 1.41 16 14 C -0.11 -3.14 7.07 31.89 0.23 -2.92 16 15 C -0.11 -2.99 6.22 31.30 0.19 -2.79 16 16 C 0.08 2.70 0.82 3.96 0.00 2.70 16 17 C -0.10 -3.27 6.28 31.61 0.20 -3.08 16 18 C 0.04 1.29 7.11 86.69 0.62 1.91 16 19 N -0.66 -22.70 7.52 -502.51 -3.78 -26.48 16 20 C 0.00 -0.17 5.41 86.16 0.47 0.29 16 21 H 0.04 1.76 5.25 -2.39 -0.01 1.74 16 22 H 0.04 2.27 6.82 -2.39 -0.02 2.26 16 23 H 0.03 1.55 7.13 -2.39 -0.02 1.53 16 24 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 25 H 0.05 1.79 5.03 -2.39 -0.01 1.78 16 26 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 27 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 29 H 0.07 1.90 7.13 -2.39 -0.02 1.88 16 30 H 0.08 2.03 7.36 -2.39 -0.02 2.02 16 31 H 0.09 2.53 7.48 -2.39 -0.02 2.51 16 32 H 0.06 2.37 8.04 -2.39 -0.02 2.35 16 33 H 0.02 0.64 7.11 -2.39 -0.02 0.62 16 34 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 35 H 0.33 11.25 8.92 -89.69 -0.80 10.45 16 36 H 0.06 2.54 3.03 -2.39 -0.01 2.53 16 37 H 0.08 2.53 7.12 -2.39 -0.02 2.51 16 Total: -1.00 -59.87 269.73 -1.67 -61.54 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: 0.27 Total: 22.36 kcal Atomic # 6 Polarization: -29.20 SS G_CDS: 3.42 Total: -25.78 kcal Atomic # 7 Polarization: -97.28 SS G_CDS: -7.38 Total: -104.67 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -59.87 -1.67 -61.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885655057.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.364 kcal (2) G-P(sol) polarization free energy of solvation -59.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds