Wall clock time and date at job start Mon Mar 30 2020 02:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00202 * 2 1 4 4 H 1.48499 * 109.47502 * 270.00327 * 3 2 1 5 5 H 1.48503 * 109.46936 * 30.00682 * 3 2 1 6 6 H 1.48507 * 109.47078 * 150.00408 * 3 2 1 7 7 C 1.37883 * 119.99664 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99896 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00238 * 359.97438 * 7 2 1 10 10 C 1.50700 * 109.47266 * 180.02562 * 9 7 2 11 11 O 1.21257 * 119.99624 * 0.27432 * 10 9 7 12 12 C 1.47166 * 119.99887 * 179.97438 * 10 9 7 13 13 C 1.39837 * 120.58115 * 359.72417 * 12 10 9 14 14 N 1.31621 * 120.55153 * 179.69997 * 13 12 10 15 15 C 1.31969 * 121.92339 * 0.59257 * 14 13 12 16 16 C 1.38473 * 121.12525 * 359.69368 * 15 14 13 17 17 Cl 1.73594 * 120.34669 * 179.97438 * 16 15 14 18 18 C 1.38446 * 119.30582 * 0.02562 * 16 15 14 19 19 H 0.96998 * 119.99719 * 359.97438 * 1 2 3 20 20 H 1.09005 * 109.47240 * 59.99727 * 9 7 2 21 21 H 1.09002 * 109.46701 * 300.00030 * 9 7 2 22 22 H 1.08000 * 119.72275 * 359.97231 * 13 12 10 23 23 H 1.07994 * 119.43649 * 179.72432 * 15 14 13 24 24 H 1.07993 * 120.87527 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5469 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2302 -3.6447 -0.0005 11 8 3.4224 -3.4231 0.0045 12 6 1.7396 -5.0322 0.0000 13 6 0.3674 -5.3015 0.0064 14 7 -0.0708 -6.5426 0.0009 15 6 0.7531 -7.5736 0.0010 16 6 2.1260 -7.3927 0.0005 17 17 3.1911 -8.7634 0.0013 18 6 2.6401 -6.1073 0.0005 19 1 -0.4849 0.8400 0.0004 20 1 0.6239 -2.5567 -0.8903 21 1 0.6247 -2.5571 0.8897 22 1 -0.3387 -4.4843 0.0113 23 1 0.3497 -8.5753 0.0010 24 1 3.7065 -5.9370 -0.0003 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002392731.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:31 Heat of formation + Delta-G solvation = -18.082642 kcal Electronic energy + Delta-G solvation = -12414.778463 eV Core-core repulsion = 9932.946493 eV Total energy + Delta-G solvation = -2481.831969 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 225.030 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.32230 -38.14963 -36.73885 -33.09519 -32.44164 -31.49333 -28.96759 -25.13723 -23.62383 -22.87575 -19.52841 -17.39732 -16.71436 -16.25472 -15.83779 -14.70898 -14.64151 -14.44641 -13.62197 -13.44760 -13.21817 -12.53445 -12.13919 -12.11851 -11.36284 -11.33716 -10.88406 -10.72233 -10.13242 -9.79352 -9.76886 -9.38798 -8.99692 -8.73607 -8.51439 -6.14229 -4.15606 0.57677 1.01049 1.87502 2.90749 3.29789 3.35784 3.41788 3.84773 4.27789 4.38157 4.60295 4.62887 4.89901 5.21089 5.24066 5.27088 5.73807 5.96224 6.40100 6.48418 7.05336 7.18468 7.73129 7.84066 8.07302 8.42002 8.93206 9.50115 10.97646 Molecular weight = 225.03amu Principal moments of inertia in cm(-1) A = 0.059470 B = 0.005861 C = 0.005351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.711100 B = 4776.051086 C = 5231.615681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.058 3.942 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.520 4.520 8 H 0.073 0.927 9 C -0.021 4.021 10 C 0.395 3.605 11 O -0.451 6.451 12 C -0.192 4.192 13 C 0.152 3.848 14 N -0.477 5.477 15 C 0.126 3.874 16 C -0.104 4.104 17 Cl -0.060 7.060 18 C -0.023 4.023 19 H 0.263 0.737 20 H 0.058 0.942 21 H 0.059 0.941 22 H 0.181 0.819 23 H 0.165 0.835 24 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.217 -14.275 0.012 14.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.143 4.143 3 Si 0.728 3.272 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.558 4.558 8 H 0.091 0.909 9 C -0.057 4.057 10 C 0.272 3.728 11 O -0.326 6.326 12 C -0.196 4.196 13 C -0.006 4.006 14 N -0.186 5.186 15 C -0.031 4.031 16 C -0.133 4.133 17 Cl -0.031 7.031 18 C -0.049 4.049 19 H 0.073 0.927 20 H 0.076 0.924 21 H 0.076 0.924 22 H 0.198 0.802 23 H 0.182 0.818 24 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 0.895 -14.308 0.017 14.336 hybrid contribution 1.310 0.808 -0.014 1.540 sum 2.205 -13.500 0.003 13.679 Atomic orbital electron populations 1.69940 1.06033 1.27135 1.50473 1.24996 0.94917 0.99528 0.94884 0.86443 0.79864 0.82641 0.78243 1.20537 1.21152 1.19673 1.21134 0.94155 0.89385 1.51164 0.90861 1.19583 0.94877 0.91351 0.99904 1.23340 0.91152 0.87975 0.70372 1.90393 1.19415 1.86924 1.35842 1.22323 0.95152 0.97791 1.04294 1.23553 0.93597 0.94143 0.89282 1.67909 1.38226 0.99480 1.12940 1.22959 0.87586 0.99198 0.93393 1.22007 0.92728 0.89490 1.09092 1.98370 1.65200 1.42515 1.97052 1.21885 1.01906 0.89696 0.91413 0.92720 0.92392 0.92366 0.80226 0.81808 0.83022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.33 13.29 55.43 0.74 -24.60 14 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 14 3 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 14 4 H -0.28 -6.56 7.11 56.52 0.40 -6.15 14 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 14 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 14 7 C -0.52 -14.37 8.92 -34.44 -0.31 -14.68 14 8 H 0.07 2.09 6.75 -52.49 -0.35 1.74 14 9 C -0.02 -0.49 4.09 -29.04 -0.12 -0.61 14 10 C 0.40 8.31 7.12 -30.69 -0.22 8.09 14 11 O -0.45 -10.63 15.53 5.58 0.09 -10.54 14 12 C -0.19 -3.26 5.89 -104.92 -0.62 -3.88 14 13 C 0.15 2.34 10.65 -17.04 -0.18 2.16 14 14 N -0.48 -6.93 10.34 -12.81 -0.13 -7.06 14 15 C 0.13 1.57 10.97 -17.41 -0.19 1.38 14 16 C -0.10 -1.35 6.34 -39.42 -0.25 -1.60 14 17 Cl -0.06 -0.67 28.98 -51.86 -1.50 -2.17 14 18 C -0.02 -0.34 9.52 -38.75 -0.37 -0.71 14 19 H 0.26 7.06 8.31 -40.82 -0.34 6.72 14 20 H 0.06 1.37 8.11 -51.93 -0.42 0.95 14 21 H 0.06 1.38 8.09 -51.93 -0.42 0.96 14 22 H 0.18 2.64 7.08 -52.49 -0.37 2.27 14 23 H 0.16 1.53 8.06 -52.49 -0.42 1.11 14 24 H 0.15 2.24 7.73 -52.49 -0.41 1.83 14 LS Contribution 242.07 15.07 3.65 3.65 Total: -1.00 -29.52 242.07 -6.07 -35.58 By element: Atomic # 1 Polarization: -1.37 SS G_CDS: -1.53 Total: -2.90 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: -2.35 Total: -8.33 kcal Atomic # 7 Polarization: -32.26 SS G_CDS: 0.60 Total: -31.66 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.09 Total: -10.54 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.50 Total: -2.17 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -29.52 -6.07 -35.58 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002392731.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.499 kcal (2) G-P(sol) polarization free energy of solvation -29.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds