Wall clock time and date at job start Mon Mar 30 2020 02:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00202 * 2 1 4 4 H 1.48499 * 109.47502 * 270.00327 * 3 2 1 5 5 H 1.48503 * 109.46936 * 30.00682 * 3 2 1 6 6 H 1.48507 * 109.47078 * 150.00408 * 3 2 1 7 7 C 1.37883 * 119.99664 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99896 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00238 * 359.97438 * 7 2 1 10 10 C 1.50700 * 109.47266 * 180.02562 * 9 7 2 11 11 O 1.21257 * 119.99624 * 0.27432 * 10 9 7 12 12 C 1.47166 * 119.99887 * 179.97438 * 10 9 7 13 13 C 1.39837 * 120.58115 * 359.72417 * 12 10 9 14 14 N 1.31621 * 120.55153 * 179.69997 * 13 12 10 15 15 C 1.31969 * 121.92339 * 0.59257 * 14 13 12 16 16 C 1.38473 * 121.12525 * 359.69368 * 15 14 13 17 17 Cl 1.73594 * 120.34669 * 179.97438 * 16 15 14 18 18 C 1.38446 * 119.30582 * 0.02562 * 16 15 14 19 19 H 0.96998 * 119.99719 * 359.97438 * 1 2 3 20 20 H 1.09005 * 109.47240 * 59.99727 * 9 7 2 21 21 H 1.09002 * 109.46701 * 300.00030 * 9 7 2 22 22 H 1.08000 * 119.72275 * 359.97231 * 13 12 10 23 23 H 1.07994 * 119.43649 * 179.72432 * 15 14 13 24 24 H 1.07993 * 120.87527 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5469 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2302 -3.6447 -0.0005 11 8 3.4224 -3.4231 0.0045 12 6 1.7396 -5.0322 0.0000 13 6 0.3674 -5.3015 0.0064 14 7 -0.0708 -6.5426 0.0009 15 6 0.7531 -7.5736 0.0010 16 6 2.1260 -7.3927 0.0005 17 17 3.1911 -8.7634 0.0013 18 6 2.6401 -6.1073 0.0005 19 1 -0.4849 0.8400 0.0004 20 1 0.6239 -2.5567 -0.8903 21 1 0.6247 -2.5571 0.8897 22 1 -0.3387 -4.4843 0.0113 23 1 0.3497 -8.5753 0.0010 24 1 3.7065 -5.9370 -0.0003 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002392731.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:30 Heat of formation + Delta-G solvation = -35.952946 kcal Electronic energy + Delta-G solvation = -12415.553377 eV Core-core repulsion = 9932.946493 eV Total energy + Delta-G solvation = -2482.606884 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 225.030 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.57659 -39.75809 -37.73159 -35.15177 -33.68546 -32.80641 -30.78473 -26.77716 -24.93865 -24.40077 -21.07446 -18.84285 -18.22346 -17.76979 -17.24427 -16.54882 -16.09765 -15.84828 -15.20414 -15.05262 -14.39776 -14.11097 -13.66235 -13.27146 -13.11235 -12.85327 -12.59494 -12.32689 -12.09924 -11.45512 -11.02124 -11.01053 -10.62236 -10.37315 -10.10505 -8.25104 -6.33187 -0.66103 -0.14938 0.84883 1.40569 1.41871 1.42089 1.53869 2.40254 2.57931 3.02689 3.10497 3.35031 3.54151 3.68973 3.96396 4.06821 4.59248 4.72389 4.88355 5.14178 5.25904 5.26034 5.70534 6.08482 6.56636 6.70226 6.80165 7.35846 8.86372 Molecular weight = 225.03amu Principal moments of inertia in cm(-1) A = 0.059470 B = 0.005861 C = 0.005351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.711100 B = 4776.051086 C = 5231.615681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.013 3.987 3 Si 0.960 3.040 4 H -0.272 1.272 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.547 4.547 8 H 0.056 0.944 9 C -0.020 4.020 10 C 0.405 3.595 11 O -0.486 6.486 12 C -0.212 4.212 13 C 0.157 3.843 14 N -0.485 5.485 15 C 0.144 3.856 16 C -0.101 4.101 17 Cl -0.036 7.036 18 C -0.021 4.021 19 H 0.268 0.732 20 H 0.055 0.945 21 H 0.055 0.945 22 H 0.181 0.819 23 H 0.204 0.796 24 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.101 -15.705 -0.005 15.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.186 4.186 3 Si 0.785 3.215 4 H -0.198 1.198 5 H -0.200 1.200 6 H -0.199 1.199 7 C -0.585 4.585 8 H 0.074 0.926 9 C -0.057 4.057 10 C 0.284 3.716 11 O -0.363 6.363 12 C -0.215 4.215 13 C 0.000 4.000 14 N -0.194 5.194 15 C -0.014 4.014 16 C -0.129 4.129 17 Cl -0.007 7.007 18 C -0.047 4.047 19 H 0.076 0.924 20 H 0.073 0.927 21 H 0.073 0.927 22 H 0.198 0.802 23 H 0.220 0.780 24 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 0.766 -15.749 -0.002 15.767 hybrid contribution 1.336 1.095 -0.008 1.727 sum 2.102 -14.654 -0.010 14.804 Atomic orbital electron populations 1.70012 1.07052 1.28126 1.50813 1.25745 0.95813 1.02633 0.94417 0.85514 0.78550 0.78883 0.78517 1.19785 1.20031 1.19861 1.21411 0.93763 0.91563 1.51714 0.92558 1.19474 0.95169 0.91474 0.99566 1.23112 0.89977 0.89441 0.69087 1.90370 1.20339 1.87724 1.37844 1.21760 0.96127 0.95675 1.07936 1.23531 0.92843 0.94923 0.88711 1.68006 1.38573 0.99300 1.13499 1.23603 0.87228 1.00192 0.90331 1.21998 0.93388 0.89358 1.08206 1.98387 1.64586 1.40893 1.96871 1.21909 1.01665 0.90232 0.90921 0.92351 0.92710 0.92678 0.80194 0.77976 0.83100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.33 13.29 21.45 0.28 -52.05 14 2 C 0.01 0.73 5.46 84.66 0.46 1.19 14 3 Si 0.96 44.07 29.54 68.60 2.03 46.10 14 4 H -0.27 -12.13 7.11 99.48 0.71 -11.42 14 5 H -0.28 -12.08 7.11 99.48 0.71 -11.37 14 6 H -0.27 -12.54 7.11 99.48 0.71 -11.83 14 7 C -0.55 -30.94 8.92 25.60 0.23 -30.71 14 8 H 0.06 3.32 6.75 -2.91 -0.02 3.30 14 9 C -0.02 -0.98 4.09 29.10 0.12 -0.86 14 10 C 0.40 17.44 7.12 28.03 0.20 17.64 14 11 O -0.49 -23.56 15.53 -2.96 -0.05 -23.61 14 12 C -0.21 -7.13 5.89 -20.06 -0.12 -7.24 14 13 C 0.16 4.72 10.65 85.11 0.91 5.63 14 14 N -0.49 -12.99 10.34 -194.43 -2.01 -15.00 14 15 C 0.14 3.11 10.97 84.73 0.93 4.04 14 16 C -0.10 -2.34 6.34 22.38 0.14 -2.20 14 17 Cl -0.04 -0.70 28.98 -2.72 -0.08 -0.78 14 18 C -0.02 -0.61 9.52 22.81 0.22 -0.39 14 19 H 0.27 14.31 8.31 -92.71 -0.77 13.54 14 20 H 0.06 2.68 8.11 -2.38 -0.02 2.66 14 21 H 0.06 2.69 8.09 -2.39 -0.02 2.67 14 22 H 0.18 5.29 7.08 -2.91 -0.02 5.27 14 23 H 0.20 2.79 8.06 -2.91 -0.02 2.77 14 24 H 0.15 4.36 7.73 -2.91 -0.02 4.34 14 Total: -1.00 -62.80 242.07 4.49 -58.32 By element: Atomic # 1 Polarization: -1.30 SS G_CDS: 1.23 Total: -0.08 kcal Atomic # 6 Polarization: -15.99 SS G_CDS: 3.09 Total: -12.91 kcal Atomic # 7 Polarization: -65.32 SS G_CDS: -1.73 Total: -67.05 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: -0.05 Total: -23.61 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -0.08 Total: -0.78 kcal Total: -62.80 4.49 -58.32 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002392731.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.364 kcal (2) G-P(sol) polarization free energy of solvation -62.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds