Wall clock time and date at job start Mon Mar 30 2020 03:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21286 * 119.99628 * 2 1 4 4 N 1.34774 * 120.00134 * 180.27636 * 2 1 3 5 5 C 1.46505 * 120.00035 * 174.54369 * 4 2 1 6 6 H 1.08998 * 109.47165 * 328.21482 * 5 4 2 7 7 C 1.50703 * 109.46724 * 208.21892 * 5 4 2 8 8 H 1.07994 * 119.99832 * 239.99079 * 7 5 4 9 9 C 1.37874 * 120.00084 * 60.00493 * 7 5 4 10 10 N 1.31518 * 120.00078 * 359.97438 * 9 7 5 11 11 Si 1.86803 * 120.00089 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.46901 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47364 * 119.99495 * 11 9 7 14 14 H 1.48499 * 109.46712 * 239.99620 * 11 9 7 15 15 C 1.50697 * 109.47299 * 88.22103 * 5 4 2 16 16 C 1.33395 * 125.20288 * 225.06058 * 15 5 4 17 17 C 1.38421 * 114.91963 * 179.97438 * 16 15 5 18 18 C 1.33383 * 114.92162 * 359.97438 * 17 16 15 19 19 S 1.75884 * 125.20273 * 44.75043 * 15 5 4 20 20 H 1.09002 * 109.47291 * 359.97438 * 1 2 3 21 21 H 1.08995 * 109.47248 * 120.00032 * 1 2 3 22 22 H 1.09008 * 109.46852 * 240.00265 * 1 2 3 23 23 H 0.97001 * 119.99808 * 354.54016 * 4 2 1 24 24 H 0.96997 * 120.00077 * 180.02562 * 10 9 7 25 25 H 1.08003 * 122.53542 * 359.97438 * 16 15 5 26 26 H 1.07997 * 122.53566 * 180.02562 * 17 16 15 27 27 H 1.07997 * 125.20143 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0056 5 6 3.6409 -1.1694 -0.1263 6 1 3.9567 -0.3204 -0.7325 7 6 4.0886 -2.4498 -0.7831 8 1 4.7539 -3.1209 -0.2603 9 6 3.6491 -2.7642 -2.0515 10 7 2.8388 -1.9470 -2.6881 11 14 4.2046 -4.3509 -2.8660 12 1 5.1080 -5.0889 -1.9471 13 1 3.0191 -5.1901 -3.1751 14 1 4.9288 -4.0346 -4.1233 15 6 4.2585 -1.0654 1.2444 16 6 5.2724 -0.2630 1.5722 17 6 5.6717 -0.3385 2.8954 18 6 4.9818 -1.2018 3.6423 19 16 3.7475 -1.9779 2.6586 20 1 -0.3634 1.0277 0.0005 21 1 -0.3633 -0.5138 -0.8899 22 1 -0.3633 -0.5138 0.8901 23 1 1.6992 -2.0057 0.0703 24 1 2.5293 -2.1683 -3.5803 25 1 5.7458 0.3957 0.8591 26 1 6.4800 0.2572 3.2931 27 1 5.1528 -1.3927 4.6914 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003631536.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:33 Heat of formation + Delta-G solvation = -34.941657 kcal Electronic energy + Delta-G solvation = -13316.375203 eV Core-core repulsion = 10971.688973 eV Total energy + Delta-G solvation = -2344.686230 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.27720 -38.51807 -36.23180 -33.98110 -31.92136 -29.80520 -28.14167 -25.32099 -23.31795 -21.20563 -19.98056 -18.93215 -18.06761 -17.39300 -16.74943 -16.19897 -15.95711 -15.59475 -14.53199 -14.07234 -14.04363 -13.60258 -13.39906 -13.25677 -12.89941 -12.88937 -12.67128 -12.57285 -12.01809 -11.61940 -11.47190 -10.91783 -10.57032 -9.66766 -9.37782 -9.20431 -8.23253 -6.46496 0.29302 0.90551 1.30634 1.40664 1.44801 1.56241 1.98674 2.00757 2.37529 2.77646 3.27859 4.18430 4.30560 4.38398 4.60630 4.72734 4.76280 4.85000 5.02456 5.18534 5.36384 5.58727 5.61194 5.70401 5.88148 6.07002 6.65842 7.12107 7.27556 7.69240 8.80304 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.021420 B = 0.012509 C = 0.009115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.898804 B = 2237.835565 C = 3071.275131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.491 3.509 3 O -0.622 6.622 4 N -0.681 5.681 5 C 0.333 3.667 6 H 0.013 0.987 7 C -0.544 4.544 8 H 0.064 0.936 9 C 0.034 3.966 10 N -0.896 5.896 11 Si 0.965 3.035 12 H -0.267 1.267 13 H -0.271 1.271 14 H -0.284 1.284 15 C -0.156 4.156 16 C -0.181 4.181 17 C -0.133 4.133 18 C -0.231 4.231 19 S 0.097 5.903 20 H 0.087 0.913 21 H 0.093 0.907 22 H 0.109 0.891 23 H 0.396 0.604 24 H 0.267 0.733 25 H 0.120 0.880 26 H 0.161 0.839 27 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.774 -2.481 8.844 9.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.279 3.721 3 O -0.507 6.507 4 N -0.327 5.327 5 C 0.228 3.772 6 H 0.031 0.969 7 C -0.583 4.583 8 H 0.082 0.918 9 C -0.170 4.170 10 N -0.532 5.532 11 Si 0.790 3.210 12 H -0.191 1.191 13 H -0.197 1.197 14 H -0.210 1.210 15 C -0.274 4.274 16 C -0.211 4.211 17 C -0.163 4.163 18 C -0.366 4.366 19 S 0.359 5.641 20 H 0.106 0.894 21 H 0.112 0.888 22 H 0.127 0.873 23 H 0.230 0.770 24 H 0.076 0.924 25 H 0.138 0.862 26 H 0.179 0.821 27 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -2.558 -2.812 8.949 9.723 hybrid contribution 1.260 0.257 -1.236 1.784 sum -1.298 -2.555 7.714 8.229 Atomic orbital electron populations 1.21844 0.89297 1.05268 1.05394 1.21578 0.92160 0.83540 0.74792 1.90572 1.72559 1.33355 1.54214 1.46492 1.08163 1.07595 1.70462 1.16759 0.78188 0.96702 0.85534 0.96903 1.21401 1.30509 1.05420 1.00957 0.91785 1.25817 0.94131 1.00032 0.97018 1.70151 1.32327 1.37269 1.13419 0.85397 0.78453 0.79114 0.78024 1.19087 1.19666 1.21011 1.25522 1.01340 1.00238 1.00333 1.20277 1.00206 1.02735 0.97913 1.20270 1.02620 1.01094 0.92340 1.25880 1.01977 1.04113 1.04612 1.83702 1.36280 1.43815 1.00288 0.89395 0.88813 0.87269 0.77007 0.92378 0.86169 0.82118 0.78933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.98 10.32 71.24 0.74 -4.24 15 2 C 0.49 22.21 7.92 87.66 0.69 22.91 15 3 O -0.62 -33.86 16.75 -3.05 -0.05 -33.91 15 4 N -0.68 -31.27 4.20 -449.68 -1.89 -33.16 15 5 C 0.33 17.11 2.28 43.50 0.10 17.21 15 6 H 0.01 0.81 7.52 -2.39 -0.02 0.79 15 7 C -0.54 -28.52 8.62 25.60 0.22 -28.30 15 8 H 0.06 3.35 7.74 -2.91 -0.02 3.32 15 9 C 0.03 1.75 5.39 84.65 0.46 2.20 15 10 N -0.90 -48.79 12.77 21.45 0.27 -48.52 15 11 Si 0.97 40.85 29.54 68.60 2.03 42.87 15 12 H -0.27 -11.06 7.11 99.48 0.71 -10.36 15 13 H -0.27 -10.99 7.11 99.48 0.71 -10.29 15 14 H -0.28 -12.09 7.11 99.48 0.71 -11.38 15 15 C -0.16 -7.03 5.34 24.59 0.13 -6.90 15 16 C -0.18 -7.62 10.03 21.22 0.21 -7.41 15 17 C -0.13 -4.41 10.18 21.21 0.22 -4.19 15 18 C -0.23 -7.02 11.23 66.72 0.75 -6.27 15 19 S 0.10 3.50 23.17 -56.49 -1.31 2.19 15 20 H 0.09 2.60 8.12 -2.39 -0.02 2.58 15 21 H 0.09 2.76 8.14 -2.39 -0.02 2.74 15 22 H 0.11 2.67 8.14 -2.38 -0.02 2.65 15 23 H 0.40 16.70 8.63 -92.71 -0.80 15.90 15 24 H 0.27 13.76 8.31 -92.71 -0.77 12.99 15 25 H 0.12 5.15 8.06 -2.91 -0.02 5.13 15 26 H 0.16 4.18 8.06 -2.91 -0.02 4.16 15 27 H 0.19 4.22 8.06 -2.91 -0.02 4.20 15 Total: -1.00 -66.04 259.81 2.95 -63.09 By element: Atomic # 1 Polarization: 22.05 SS G_CDS: 0.38 Total: 22.44 kcal Atomic # 6 Polarization: -18.51 SS G_CDS: 3.51 Total: -15.00 kcal Atomic # 7 Polarization: -80.07 SS G_CDS: -1.61 Total: -81.68 kcal Atomic # 8 Polarization: -33.86 SS G_CDS: -0.05 Total: -33.91 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 2.03 Total: 42.87 kcal Atomic # 16 Polarization: 3.50 SS G_CDS: -1.31 Total: 2.19 kcal Total: -66.04 2.95 -63.09 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003631536.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.146 kcal (2) G-P(sol) polarization free energy of solvation -66.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds