Wall clock time and date at job start Mon Mar 30 2020 02:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47191 * 179.97438 * 2 1 4 4 S 1.81004 * 109.47256 * 166.90629 * 3 2 1 5 5 C 1.76201 * 100.00279 * 179.97438 * 4 3 2 6 6 N 1.31079 * 126.04389 * 359.97438 * 5 4 3 7 7 N 1.40060 * 108.13142 * 180.02562 * 6 5 4 8 8 C 1.30993 * 108.16977 * 0.02562 * 7 6 5 9 9 N 1.38909 * 126.01648 * 179.97438 * 8 7 6 10 10 N 1.37117 * 107.97033 * 0.02562 * 8 7 6 11 11 C 1.37633 * 126.09092 * 180.02562 * 10 8 7 12 12 H 1.08003 * 119.99905 * 215.96602 * 11 10 8 13 13 C 1.38880 * 119.99981 * 35.96456 * 11 10 8 14 14 N 1.31378 * 120.00030 * 18.86675 * 13 11 10 15 15 Si 1.86806 * 119.99771 * 198.87009 * 13 11 10 16 16 H 1.48495 * 109.47259 * 59.99913 * 15 13 11 17 17 H 1.48497 * 109.46931 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46812 * 299.99886 * 15 13 11 19 19 H 1.09003 * 109.47684 * 46.91263 * 3 2 1 20 20 H 1.08998 * 109.47487 * 286.90761 * 3 2 1 21 21 H 0.96999 * 120.00036 * 7.89067 * 9 8 7 22 22 H 0.96995 * 120.00197 * 187.89664 * 9 8 7 23 23 H 0.97000 * 120.00453 * 183.72493 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 16 3.2106 1.6631 -0.3866 5 6 4.9487 1.3817 -0.3202 6 7 5.5356 0.2403 -0.0537 7 7 6.9210 0.4414 -0.0994 8 6 7.1417 1.6991 -0.3916 9 7 8.3869 2.2992 -0.5297 10 7 5.9274 2.3193 -0.5362 11 6 5.7259 3.6453 -0.8451 12 1 4.8979 4.1822 -0.4062 13 6 6.5873 4.2929 -1.7210 14 7 7.3486 3.5930 -2.5313 15 14 6.6635 6.1592 -1.7470 16 1 7.0720 6.6566 -0.4087 17 1 7.6530 6.6001 -2.7627 18 1 5.3256 6.7045 -2.0906 19 1 2.9717 -0.7012 -0.7505 20 1 2.9715 -0.2980 0.9832 21 1 9.1906 1.7563 -0.5208 22 1 8.4526 3.2612 -0.6349 23 1 7.9889 4.0427 -3.1046 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000008015148.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:55 Heat of formation + Delta-G solvation = 93.585766 kcal Electronic energy + Delta-G solvation = -12744.752772 eV Core-core repulsion = 10334.392317 eV Total energy + Delta-G solvation = -2410.360455 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 225.038 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.11846 -37.78875 -36.18461 -34.71993 -32.97048 -31.36627 -29.73246 -27.08267 -23.17589 -22.37806 -20.34362 -18.99236 -17.63903 -17.32091 -16.89205 -16.62209 -16.24715 -15.86698 -15.75566 -15.28942 -13.94658 -13.79767 -13.56596 -13.24944 -13.16483 -12.84777 -12.25208 -12.05252 -11.89426 -11.73469 -11.30929 -11.10515 -10.38917 -9.42545 -8.62158 -8.23351 -6.53043 -0.02348 0.99692 1.29955 1.45755 1.56386 1.61333 1.63854 1.97799 2.09262 2.20422 2.52687 2.71095 2.82819 3.61419 4.16182 4.50755 4.75716 4.96036 5.17192 5.42680 6.11038 6.33421 6.50463 6.76978 6.93155 7.41873 7.86053 8.40461 Molecular weight = 225.04amu Principal moments of inertia in cm(-1) A = 0.032581 B = 0.009280 C = 0.007466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.192264 B = 3016.357096 C = 3749.575684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C 0.253 3.747 3 C -0.017 4.017 4 S 0.046 5.954 5 C 0.132 3.868 6 N -0.355 5.355 7 N -0.441 5.441 8 C 0.468 3.532 9 N -0.802 5.802 10 N -0.337 5.337 11 C -0.386 4.386 12 H 0.111 0.889 13 C 0.019 3.981 14 N -0.854 5.854 15 Si 0.998 3.002 16 H -0.258 1.258 17 H -0.272 1.272 18 H -0.266 1.266 19 H 0.151 0.849 20 H 0.156 0.844 21 H 0.411 0.589 22 H 0.407 0.593 23 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.310 1.964 2.202 3.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.128 5.128 2 C -0.065 4.065 3 C -0.168 4.168 4 S 0.270 5.730 5 C -0.249 4.249 6 N -0.195 5.195 7 N -0.288 5.288 8 C 0.104 3.896 9 N -0.360 5.360 10 N -0.028 5.028 11 C -0.514 4.514 12 H 0.128 0.872 13 C -0.190 4.190 14 N -0.486 5.486 15 Si 0.818 3.182 16 H -0.183 1.183 17 H -0.197 1.197 18 H -0.190 1.190 19 H 0.169 0.831 20 H 0.173 0.827 21 H 0.242 0.758 22 H 0.240 0.760 23 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.302 1.356 2.141 4.162 hybrid contribution 1.670 1.077 -0.463 2.040 sum -1.632 2.432 1.678 3.376 Atomic orbital electron populations 1.81253 1.12918 1.08600 1.10053 1.27847 0.93528 0.92924 0.92201 1.20854 0.84012 1.00435 1.11504 1.85388 0.87279 1.10473 1.89843 1.26137 0.97594 0.89787 1.11355 1.77503 0.98275 1.17886 1.25870 1.77571 1.05295 1.11054 1.34913 1.20998 0.83390 0.88916 0.96269 1.40848 1.00628 1.10137 1.84395 1.42074 1.01760 1.09302 1.49667 1.19999 1.19150 0.83267 1.29008 0.87176 1.26406 0.95392 1.05658 0.91562 1.70138 1.20992 1.39512 1.17952 0.84925 0.79062 0.75179 0.78989 1.18275 1.19697 1.19011 0.83135 0.82679 0.75809 0.76013 0.90282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -13.52 18.54 20.00 0.37 -13.15 14 2 C 0.25 6.59 15.43 89.44 1.38 7.97 14 3 C -0.02 -0.43 5.69 70.17 0.40 -0.03 14 4 S 0.05 1.56 21.86 -56.49 -1.23 0.33 14 5 C 0.13 5.97 8.01 179.38 1.44 7.41 14 6 N -0.36 -16.76 12.05 -56.52 -0.68 -17.44 14 7 N -0.44 -22.37 12.71 -57.50 -0.73 -23.10 14 8 C 0.47 23.00 8.40 259.72 2.18 25.18 14 9 N -0.80 -33.21 7.98 -57.52 -0.46 -33.67 14 10 N -0.34 -16.64 2.84 -350.86 -1.00 -17.63 14 11 C -0.39 -18.32 9.54 83.94 0.80 -17.51 14 12 H 0.11 5.03 7.90 -2.91 -0.02 5.01 14 13 C 0.02 0.85 4.10 84.91 0.35 1.20 14 14 N -0.85 -40.00 10.93 21.65 0.24 -39.76 14 15 Si 1.00 34.27 29.59 68.60 2.03 36.30 14 16 H -0.26 -8.54 7.11 99.48 0.71 -7.84 14 17 H -0.27 -9.06 7.11 99.48 0.71 -8.36 14 18 H -0.27 -9.13 7.11 99.48 0.71 -8.43 14 19 H 0.15 3.50 8.14 -2.39 -0.02 3.48 14 20 H 0.16 3.43 8.14 -2.40 -0.02 3.41 14 21 H 0.41 14.63 8.95 -92.71 -0.83 13.80 14 22 H 0.41 16.46 6.47 -92.71 -0.60 15.86 14 23 H 0.29 12.36 8.31 -92.71 -0.77 11.59 14 Total: -1.00 -60.31 236.91 4.94 -55.37 By element: Atomic # 1 Polarization: 28.68 SS G_CDS: -0.14 Total: 28.54 kcal Atomic # 6 Polarization: 17.67 SS G_CDS: 6.55 Total: 24.22 kcal Atomic # 7 Polarization: -142.50 SS G_CDS: -2.26 Total: -144.76 kcal Atomic # 14 Polarization: 34.27 SS G_CDS: 2.03 Total: 36.30 kcal Atomic # 16 Polarization: 1.56 SS G_CDS: -1.23 Total: 0.33 kcal Total: -60.31 4.94 -55.37 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008015148.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.958 kcal (2) G-P(sol) polarization free energy of solvation -60.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds