Wall clock time and date at job start Mon Mar 30 2020 03:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 120.00271 * 2 1 4 4 H 1.48504 * 109.46947 * 264.74298 * 3 2 1 5 5 H 1.48505 * 109.47046 * 24.74144 * 3 2 1 6 6 H 1.48494 * 109.47408 * 144.73991 * 3 2 1 7 7 C 1.38810 * 119.99987 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00041 * 165.07805 * 7 2 1 9 9 N 1.36942 * 120.00053 * 345.09136 * 7 2 1 10 10 C 1.47077 * 121.09570 * 155.12397 * 9 7 2 11 11 C 1.53539 * 108.80596 * 115.46674 * 10 9 7 12 12 C 1.52108 * 109.11057 * 47.08697 * 11 10 9 13 13 N 1.32968 * 123.90158 * 161.02704 * 12 11 10 14 14 C 1.29291 * 117.69469 * 179.39668 * 13 12 11 15 15 N 1.38611 * 124.96580 * 180.02562 * 14 13 12 16 16 S 1.70899 * 110.06948 * 0.07427 * 14 13 12 17 17 C 1.34337 * 123.02035 * 340.65106 * 12 11 10 18 18 C 1.47299 * 121.09315 * 335.40101 * 9 7 2 19 19 H 0.96999 * 119.99881 * 359.97438 * 1 2 3 20 20 H 1.08992 * 109.53453 * 235.34022 * 10 9 7 21 21 H 1.08997 * 109.53781 * 355.59151 * 10 9 7 22 22 H 1.08998 * 109.63633 * 287.13842 * 11 10 9 23 23 H 1.08997 * 109.43705 * 166.91490 * 11 10 9 24 24 H 0.97002 * 119.99895 * 179.97438 * 15 14 13 25 25 H 0.97001 * 119.99974 * 359.97438 * 15 14 13 26 26 H 1.09001 * 109.85323 * 342.82177 * 18 9 7 27 27 H 1.09003 * 109.85340 * 103.82741 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.6089 1.9822 -1.3942 5 1 1.3966 2.6822 0.5860 6 1 3.4878 1.4748 0.8082 7 6 2.0102 -1.2021 0.0005 8 1 3.0629 -1.2180 -0.2403 9 7 1.3601 -2.3680 0.3062 10 6 1.8543 -3.6640 -0.1829 11 6 2.2827 -4.5164 1.0201 12 6 1.1942 -4.4628 2.0813 13 7 1.0729 -5.3495 3.0647 14 6 0.1084 -5.1818 3.9093 15 7 -0.1561 -6.0113 4.9879 16 16 -0.7935 -3.7889 3.5007 17 6 0.2568 -3.5013 2.1205 18 6 0.1394 -2.3647 1.1306 19 1 -0.4850 0.8400 0.0004 20 1 1.0611 -4.1737 -0.7297 21 1 2.7079 -3.5037 -0.8415 22 1 3.2131 -4.1263 1.4327 23 1 2.4290 -5.5480 0.7001 24 1 -0.9010 -5.8169 5.5780 25 1 0.4037 -6.7862 5.1525 26 1 0.0548 -1.4173 1.6629 27 1 -0.7353 -2.5139 0.4975 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019976371.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:58 Heat of formation + Delta-G solvation = 68.353541 kcal Electronic energy + Delta-G solvation = -13347.486216 eV Core-core repulsion = 11039.571953 eV Total energy + Delta-G solvation = -2307.914263 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.063 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.24189 -36.31007 -34.00168 -32.00080 -29.75850 -28.92494 -25.12641 -23.47125 -22.62283 -20.98548 -18.46367 -18.04363 -16.62096 -15.63782 -15.23128 -14.72602 -14.55671 -13.78787 -13.40595 -12.90146 -12.82700 -12.03760 -11.53218 -11.42564 -11.16686 -10.78492 -10.57743 -10.42728 -9.92457 -9.82869 -9.76916 -9.01332 -8.71385 -8.42067 -7.13167 -6.81625 -5.85623 -3.24269 1.66593 1.69247 2.40746 3.37244 3.43671 3.46337 3.53965 3.73384 4.46473 5.16922 5.35485 5.54142 5.91578 6.08187 6.18601 6.27460 6.51034 6.70272 6.77221 6.91854 7.17196 7.20954 7.48687 7.54916 7.74480 8.31993 8.54986 9.12306 9.75233 10.32859 11.25491 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.042833 B = 0.008552 C = 0.007709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.540265 B = 3273.378995 C = 3631.106689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.002 3.998 3 Si 0.907 3.093 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.250 4.250 8 H 0.072 0.928 9 N -0.587 5.587 10 C 0.144 3.856 11 C -0.053 4.053 12 C 0.087 3.913 13 N -0.548 5.548 14 C 0.293 3.707 15 N -0.831 5.831 16 S 0.063 5.937 17 C -0.235 4.235 18 C 0.252 3.748 19 H 0.256 0.744 20 H 0.030 0.970 21 H 0.067 0.933 22 H 0.073 0.927 23 H 0.067 0.933 24 H 0.408 0.592 25 H 0.404 0.596 26 H 0.094 0.906 27 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.348 -8.592 7.019 11.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.196 4.196 3 Si 0.736 3.264 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.379 4.379 8 H 0.089 0.911 9 N -0.310 5.310 10 C 0.017 3.983 11 C -0.095 4.095 12 C -0.040 4.040 13 N -0.273 5.273 14 C -0.080 4.080 15 N -0.385 5.385 16 S 0.310 5.690 17 C -0.358 4.358 18 C 0.124 3.876 19 H 0.066 0.934 20 H 0.048 0.952 21 H 0.086 0.914 22 H 0.091 0.909 23 H 0.085 0.915 24 H 0.238 0.762 25 H 0.235 0.765 26 H 0.112 0.888 27 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -1.954 -8.348 7.458 11.364 hybrid contribution 0.904 0.459 -0.049 1.015 sum -1.050 -7.889 7.410 10.874 Atomic orbital electron populations 1.69981 1.05265 1.25832 1.54106 1.25029 0.95408 0.98466 1.00738 0.86246 0.79047 0.83222 0.77871 1.21195 1.21491 1.20503 1.19197 0.92273 0.84195 1.42259 0.91069 1.44110 1.29501 1.01748 1.55628 1.21037 0.97779 0.86892 0.92601 1.21027 0.94593 1.00196 0.93668 1.20305 0.98225 0.90249 0.95218 1.65889 1.22399 1.32066 1.06934 1.23046 0.95617 0.95608 0.93771 1.41313 1.37557 1.30696 1.28953 1.83678 1.35225 1.23278 1.26781 1.27204 1.00034 1.06625 1.01966 1.19406 0.89088 0.91558 0.87568 0.93371 0.95227 0.91448 0.90902 0.91460 0.76182 0.76523 0.88766 0.93692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.89 11.06 55.49 0.61 -25.28 15 2 C 0.00 0.06 5.02 -17.43 -0.09 -0.03 15 3 Si 0.91 21.50 29.58 -169.99 -5.03 16.47 15 4 H -0.29 -6.71 7.11 56.52 0.40 -6.31 15 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 15 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 7 C -0.25 -6.80 9.67 -15.06 -0.15 -6.95 15 8 H 0.07 1.88 7.87 -52.48 -0.41 1.46 15 9 N -0.59 -14.94 2.99 -172.88 -0.52 -15.46 15 10 C 0.14 3.06 6.45 -3.45 -0.02 3.04 15 11 C -0.05 -1.03 6.47 -26.91 -0.17 -1.20 15 12 C 0.09 1.85 6.79 -82.78 -0.56 1.29 15 13 N -0.55 -10.85 10.57 -10.62 -0.11 -10.96 15 14 C 0.29 4.98 8.57 -88.00 -0.75 4.23 15 15 N -0.83 -9.83 9.08 29.69 0.27 -9.56 15 16 S 0.06 1.12 23.20 -107.50 -2.49 -1.38 15 17 C -0.23 -5.12 6.47 -35.45 -0.23 -5.35 15 18 C 0.25 6.24 5.34 -4.52 -0.02 6.21 15 19 H 0.26 7.06 8.31 -40.82 -0.34 6.72 15 20 H 0.03 0.62 8.14 -51.93 -0.42 0.20 15 21 H 0.07 1.34 7.94 -51.93 -0.41 0.93 15 22 H 0.07 1.43 8.14 -51.93 -0.42 1.00 15 23 H 0.07 1.16 8.14 -51.93 -0.42 0.74 15 24 H 0.41 3.58 8.95 -40.82 -0.37 3.22 15 25 H 0.40 4.16 8.95 -40.82 -0.37 3.79 15 26 H 0.09 2.56 6.44 -51.93 -0.33 2.22 15 27 H 0.05 1.17 8.14 -51.93 -0.42 0.75 15 LS Contribution 243.64 15.07 3.67 3.67 Total: -1.00 -30.86 243.64 -8.31 -39.17 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -2.72 Total: 2.09 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: -2.00 Total: 1.24 kcal Atomic # 7 Polarization: -61.51 SS G_CDS: 0.26 Total: -61.26 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.47 kcal Atomic # 16 Polarization: 1.12 SS G_CDS: -2.49 Total: -1.38 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -30.86 -8.31 -39.17 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019976371.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.522 kcal (2) G-P(sol) polarization free energy of solvation -30.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds