Wall clock time and date at job start Mon Mar 30 2020 03:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 120.00271 * 2 1 4 4 H 1.48504 * 109.46947 * 264.74298 * 3 2 1 5 5 H 1.48505 * 109.47046 * 24.74144 * 3 2 1 6 6 H 1.48494 * 109.47408 * 144.73991 * 3 2 1 7 7 C 1.38810 * 119.99987 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00041 * 165.07805 * 7 2 1 9 9 N 1.36942 * 120.00053 * 345.09136 * 7 2 1 10 10 C 1.47077 * 121.09570 * 155.12397 * 9 7 2 11 11 C 1.53539 * 108.80596 * 115.46674 * 10 9 7 12 12 C 1.52108 * 109.11057 * 47.08697 * 11 10 9 13 13 N 1.32968 * 123.90158 * 161.02704 * 12 11 10 14 14 C 1.29291 * 117.69469 * 179.39668 * 13 12 11 15 15 N 1.38611 * 124.96580 * 180.02562 * 14 13 12 16 16 S 1.70899 * 110.06948 * 0.07427 * 14 13 12 17 17 C 1.34337 * 123.02035 * 340.65106 * 12 11 10 18 18 C 1.47299 * 121.09315 * 335.40101 * 9 7 2 19 19 H 0.96999 * 119.99881 * 359.97438 * 1 2 3 20 20 H 1.08992 * 109.53453 * 235.34022 * 10 9 7 21 21 H 1.08997 * 109.53781 * 355.59151 * 10 9 7 22 22 H 1.08998 * 109.63633 * 287.13842 * 11 10 9 23 23 H 1.08997 * 109.43705 * 166.91490 * 11 10 9 24 24 H 0.97002 * 119.99895 * 179.97438 * 15 14 13 25 25 H 0.97001 * 119.99974 * 359.97438 * 15 14 13 26 26 H 1.09001 * 109.85323 * 342.82177 * 18 9 7 27 27 H 1.09003 * 109.85340 * 103.82741 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.6089 1.9822 -1.3942 5 1 1.3966 2.6822 0.5860 6 1 3.4878 1.4748 0.8082 7 6 2.0102 -1.2021 0.0005 8 1 3.0629 -1.2180 -0.2403 9 7 1.3601 -2.3680 0.3062 10 6 1.8543 -3.6640 -0.1829 11 6 2.2827 -4.5164 1.0201 12 6 1.1942 -4.4628 2.0813 13 7 1.0729 -5.3495 3.0647 14 6 0.1084 -5.1818 3.9093 15 7 -0.1561 -6.0113 4.9879 16 16 -0.7935 -3.7889 3.5007 17 6 0.2568 -3.5013 2.1205 18 6 0.1394 -2.3647 1.1306 19 1 -0.4850 0.8400 0.0004 20 1 1.0611 -4.1737 -0.7297 21 1 2.7079 -3.5037 -0.8415 22 1 3.2131 -4.1263 1.4327 23 1 2.4290 -5.5480 0.7001 24 1 -0.9010 -5.8169 5.5780 25 1 0.4037 -6.7862 5.1525 26 1 0.0548 -1.4173 1.6629 27 1 -0.7353 -2.5139 0.4975 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019976371.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:58 Heat of formation + Delta-G solvation = 46.986260 kcal Electronic energy + Delta-G solvation = -13348.412771 eV Core-core repulsion = 11039.571953 eV Total energy + Delta-G solvation = -2308.840818 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.063 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.76648 -38.00321 -35.44417 -33.81976 -31.51349 -30.64959 -26.97275 -25.07491 -24.34394 -22.62974 -20.05326 -19.58223 -18.30616 -17.04260 -16.84090 -16.48366 -16.06467 -15.57909 -15.06565 -14.67612 -14.58414 -13.65770 -13.20411 -13.17937 -12.99166 -12.64438 -12.30399 -12.27491 -11.79005 -11.56814 -11.21990 -10.64380 -10.50118 -9.95993 -8.81749 -8.57788 -7.90996 -5.33203 0.16525 0.26231 0.89353 1.49151 1.50891 1.59941 2.01241 2.51269 2.52348 3.29239 3.59439 3.89139 4.29556 4.43157 4.60879 4.61996 4.92372 5.05679 5.13083 5.17172 5.44290 5.52205 5.64659 6.07644 6.31015 6.47141 7.08354 7.18321 7.76901 8.32903 9.19136 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.042833 B = 0.008552 C = 0.007709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.540265 B = 3273.378995 C = 3631.106689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.050 4.050 3 Si 0.972 3.028 4 H -0.280 1.280 5 H -0.293 1.293 6 H -0.273 1.273 7 C -0.263 4.263 8 H 0.077 0.923 9 N -0.608 5.608 10 C 0.142 3.858 11 C -0.046 4.046 12 C 0.094 3.906 13 N -0.574 5.574 14 C 0.308 3.692 15 N -0.802 5.802 16 S 0.107 5.893 17 C -0.290 4.290 18 C 0.271 3.729 19 H 0.252 0.748 20 H 0.029 0.971 21 H 0.078 0.922 22 H 0.073 0.927 23 H 0.094 0.906 24 H 0.426 0.574 25 H 0.417 0.583 26 H 0.060 0.940 27 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.755 -9.926 8.457 13.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.245 4.245 3 Si 0.799 3.201 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.198 1.198 7 C -0.392 4.392 8 H 0.094 0.906 9 N -0.331 5.331 10 C 0.016 3.984 11 C -0.088 4.088 12 C -0.034 4.034 13 N -0.300 5.300 14 C -0.067 4.067 15 N -0.358 5.358 16 S 0.354 5.646 17 C -0.413 4.413 18 C 0.143 3.857 19 H 0.061 0.939 20 H 0.047 0.953 21 H 0.097 0.903 22 H 0.091 0.909 23 H 0.112 0.888 24 H 0.260 0.740 25 H 0.250 0.750 26 H 0.078 0.922 27 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -1.371 -9.731 8.944 13.288 hybrid contribution 0.664 0.711 -0.374 1.042 sum -0.707 -9.020 8.570 12.462 Atomic orbital electron populations 1.70145 1.06642 1.26108 1.55588 1.25799 0.96170 1.01507 1.01027 0.85235 0.77789 0.79153 0.77910 1.20609 1.21899 1.19803 1.19558 0.92693 0.85246 1.41743 0.90575 1.44360 1.29420 1.02689 1.56639 1.21169 0.97996 0.85540 0.93654 1.20929 0.94041 1.01195 0.92611 1.20564 0.97660 0.89823 0.95399 1.65971 1.23998 1.32333 1.07740 1.23397 0.94244 0.95338 0.93716 1.41382 1.37718 1.29690 1.26970 1.83370 1.33551 1.23142 1.24542 1.26697 1.03143 1.06988 1.04486 1.18801 0.88054 0.91278 0.87588 0.93871 0.95276 0.90336 0.90861 0.88751 0.74027 0.74965 0.92162 0.96725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.46 11.06 21.65 0.24 -55.22 15 2 C -0.05 -2.79 5.02 84.86 0.43 -2.36 15 3 Si 0.97 44.84 29.58 68.60 2.03 46.87 15 4 H -0.28 -12.56 7.11 99.48 0.71 -11.85 15 5 H -0.29 -13.56 7.11 99.48 0.71 -12.85 15 6 H -0.27 -12.17 7.11 99.48 0.71 -11.46 15 7 C -0.26 -14.53 9.67 84.03 0.81 -13.72 15 8 H 0.08 4.03 7.87 -2.91 -0.02 4.00 15 9 N -0.61 -31.59 2.99 -700.87 -2.09 -33.68 15 10 C 0.14 6.04 6.45 86.45 0.56 6.60 15 11 C -0.05 -1.74 6.47 30.48 0.20 -1.55 15 12 C 0.09 3.88 6.79 41.95 0.28 4.17 15 13 N -0.57 -21.36 10.57 -187.50 -1.98 -23.34 15 14 C 0.31 9.56 8.57 179.43 1.54 11.10 15 15 N -0.80 -15.68 9.08 -59.98 -0.54 -16.22 15 16 S 0.11 3.60 23.20 -56.49 -1.31 2.29 15 17 C -0.29 -12.67 6.47 24.95 0.16 -12.51 15 18 C 0.27 13.95 5.34 85.63 0.46 14.41 15 19 H 0.25 14.39 8.31 -92.71 -0.77 13.62 15 20 H 0.03 1.23 8.14 -2.39 -0.02 1.21 15 21 H 0.08 3.08 7.94 -2.39 -0.02 3.06 15 22 H 0.07 2.77 8.14 -2.39 -0.02 2.75 15 23 H 0.09 3.04 8.14 -2.39 -0.02 3.02 15 24 H 0.43 5.59 8.95 -92.71 -0.83 4.76 15 25 H 0.42 6.75 8.95 -92.71 -0.83 5.92 15 26 H 0.06 3.44 6.44 -2.39 -0.02 3.42 15 27 H 0.02 0.83 8.14 -2.39 -0.02 0.81 15 Total: -1.00 -67.10 243.64 0.33 -66.77 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -0.45 Total: 6.40 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: 4.44 Total: 6.14 kcal Atomic # 7 Polarization: -124.10 SS G_CDS: -4.38 Total: -128.48 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Atomic # 16 Polarization: 3.60 SS G_CDS: -1.31 Total: 2.29 kcal Total: -67.10 0.33 -66.77 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019976371.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.756 kcal (2) G-P(sol) polarization free energy of solvation -67.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds