Wall clock time and date at job start Mon Mar 30 2020 03:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86803 * 120.00172 * 2 1 4 4 H 1.48498 * 109.47289 * 240.00071 * 3 2 1 5 5 H 1.48503 * 109.46678 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47301 * 119.99320 * 3 2 1 7 7 C 1.37879 * 119.99902 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99808 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00175 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46840 * 179.97438 * 9 7 2 11 11 N 1.46508 * 109.46771 * 180.02562 * 10 9 7 12 12 C 1.39668 * 119.99761 * 180.02562 * 11 10 9 13 13 C 1.38940 * 120.06905 * 359.97431 * 12 11 10 14 14 C 1.38093 * 119.94924 * 180.02562 * 13 12 11 15 15 C 1.38288 * 120.08810 * 359.97438 * 14 13 12 16 16 C 1.38387 * 120.13771 * 0.04117 * 15 14 13 17 17 Cl 1.73596 * 119.97635 * 180.02562 * 16 15 14 18 18 C 1.38245 * 120.04856 * 359.96022 * 16 15 14 19 19 H 0.97000 * 120.00481 * 0.02562 * 1 2 3 20 20 H 1.09002 * 109.46977 * 59.99690 * 9 7 2 21 21 H 1.08999 * 109.46783 * 299.99535 * 9 7 2 22 22 H 1.08997 * 109.47010 * 60.00322 * 10 9 7 23 23 H 1.08999 * 109.47194 * 299.99457 * 10 9 7 24 24 H 0.97003 * 119.99842 * 359.97438 * 11 10 9 25 25 H 1.07996 * 120.02748 * 0.02562 * 13 12 11 26 26 H 1.08001 * 119.95540 * 179.97438 * 14 13 12 27 27 H 1.08000 * 119.92927 * 180.02562 * 15 14 13 28 28 H 1.07995 * 120.04656 * 180.29874 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5128 -4.9308 -0.0001 12 6 2.2111 -6.1404 0.0003 13 6 3.6005 -6.1420 0.0008 14 6 4.2886 -7.3393 0.0007 15 6 3.5965 -8.5366 0.0007 16 6 2.2126 -8.5392 -0.0001 17 17 1.3481 -10.0446 0.0005 18 6 1.5181 -7.3439 -0.0001 19 1 -0.4851 0.8400 -0.0004 20 1 0.6246 -2.5571 -0.8897 21 1 0.6241 -2.5567 0.8903 22 1 2.8719 -3.6043 0.8905 23 1 2.8719 -3.6043 -0.8895 24 1 0.5427 -4.9308 0.0000 25 1 4.1421 -5.2076 0.0013 26 1 5.3686 -7.3407 0.0006 27 1 4.1372 -9.4715 0.0010 28 1 0.4382 -7.3459 0.0042 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020050993.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:24 Heat of formation + Delta-G solvation = -13.818643 kcal Electronic energy + Delta-G solvation = -12405.030693 eV Core-core repulsion = 10059.216720 eV Total energy + Delta-G solvation = -2345.813974 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.38708 -37.71873 -36.78572 -35.01155 -32.33587 -31.49145 -29.35005 -26.44369 -24.06984 -22.99598 -21.99173 -18.90551 -18.14263 -17.18874 -16.54596 -16.37599 -15.85216 -15.46891 -14.96708 -14.46960 -14.42777 -14.21497 -13.29214 -13.17081 -12.70020 -12.65070 -12.51251 -12.20366 -12.11757 -11.86032 -11.53719 -11.39717 -10.91138 -10.57133 -9.71217 -8.37374 -8.24674 -6.36077 0.31165 0.61665 1.17438 1.41823 1.44271 1.52154 2.36326 2.63935 2.84439 3.10370 3.97560 4.24371 4.31343 4.39240 4.52999 4.54563 4.63371 4.87588 4.91109 5.26988 5.37752 5.41065 5.55801 5.57735 5.70192 5.82886 6.10914 6.40245 6.76690 6.84314 7.33962 8.87421 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.067145 B = 0.004523 C = 0.004251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 416.904947 B = 6189.180033 C = 6585.638032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.968 3.032 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.544 4.544 8 H 0.067 0.933 9 C 0.020 3.980 10 C 0.147 3.853 11 N -0.742 5.742 12 C 0.219 3.781 13 C -0.211 4.211 14 C -0.053 4.053 15 C -0.181 4.181 16 C 0.007 3.993 17 Cl -0.074 7.074 18 C -0.208 4.208 19 H 0.265 0.735 20 H -0.001 1.001 21 H -0.001 1.001 22 H 0.053 0.947 23 H 0.053 0.947 24 H 0.400 0.600 25 H 0.127 0.873 26 H 0.158 0.842 27 H 0.148 0.852 28 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.775 -15.743 0.003 17.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.792 3.208 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.583 4.583 8 H 0.085 0.915 9 C -0.017 4.017 10 C 0.023 3.977 11 N -0.369 5.369 12 C 0.113 3.887 13 C -0.234 4.234 14 C -0.072 4.072 15 C -0.202 4.202 16 C -0.020 4.020 17 Cl -0.045 7.045 18 C -0.232 4.232 19 H 0.073 0.927 20 H 0.017 0.983 21 H 0.017 0.983 22 H 0.071 0.929 23 H 0.071 0.929 24 H 0.234 0.766 25 H 0.145 0.855 26 H 0.176 0.824 27 H 0.166 0.834 28 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 6.663 -15.565 0.003 16.931 hybrid contribution -0.652 0.941 0.002 1.144 sum 6.011 -14.625 0.005 15.812 Atomic orbital electron populations 1.70076 1.07843 1.28048 1.51132 1.25961 0.95757 1.03443 0.94471 0.85459 0.78220 0.77842 0.79300 1.19038 1.21034 1.19050 1.21477 0.93820 0.91640 1.51338 0.91475 1.19110 0.94523 0.92504 0.95605 1.21271 0.94941 0.81712 0.99796 1.45049 1.08582 1.02828 1.80464 1.17986 0.92176 0.85705 0.92875 1.21017 0.92056 1.00042 1.10271 1.21144 1.01054 0.90252 0.94713 1.21017 0.91385 0.99841 1.07965 1.20697 0.92818 0.86071 1.02399 1.98347 1.77341 1.31900 1.96883 1.20470 1.00263 0.89826 1.12625 0.92653 0.98264 0.98259 0.92901 0.92905 0.76579 0.85504 0.82405 0.83440 0.85146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.16 13.29 21.45 0.28 -54.88 15 2 C 0.00 0.12 5.46 84.66 0.46 0.58 15 3 Si 0.97 42.82 29.54 68.60 2.03 44.85 15 4 H -0.27 -11.26 7.11 99.48 0.71 -10.55 15 5 H -0.28 -12.44 7.11 99.48 0.71 -11.73 15 6 H -0.27 -11.26 7.11 99.48 0.71 -10.56 15 7 C -0.54 -29.65 9.11 25.60 0.23 -29.41 15 8 H 0.07 3.45 7.74 -2.91 -0.02 3.43 15 9 C 0.02 1.00 5.09 29.85 0.15 1.16 15 10 C 0.15 5.79 4.85 86.38 0.42 6.21 15 11 N -0.74 -25.66 5.73 -339.41 -1.95 -27.60 15 12 C 0.22 6.75 6.65 38.21 0.25 7.01 15 13 C -0.21 -5.88 9.31 22.40 0.21 -5.67 15 14 C -0.05 -1.18 10.04 22.25 0.22 -0.95 15 15 C -0.18 -4.02 9.83 22.32 0.22 -3.80 15 16 C 0.01 0.19 6.32 22.31 0.14 0.33 15 17 Cl -0.07 -1.65 28.95 -2.72 -0.08 -1.73 15 18 C -0.21 -5.85 9.68 22.42 0.22 -5.64 15 19 H 0.26 14.80 8.31 -92.71 -0.77 14.03 15 20 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 15 21 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 15 22 H 0.05 2.05 7.95 -2.39 -0.02 2.03 15 23 H 0.05 2.05 7.95 -2.39 -0.02 2.03 15 24 H 0.40 13.43 8.49 -92.71 -0.79 12.65 15 25 H 0.13 3.52 6.73 -2.91 -0.02 3.50 15 26 H 0.16 2.46 8.06 -2.91 -0.02 2.44 15 27 H 0.15 2.54 8.06 -2.91 -0.02 2.52 15 28 H 0.13 3.46 8.06 -2.91 -0.02 3.44 15 Total: -1.00 -59.67 262.78 3.19 -56.48 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: 0.37 Total: 13.07 kcal Atomic # 6 Polarization: -32.72 SS G_CDS: 2.53 Total: -30.19 kcal Atomic # 7 Polarization: -80.82 SS G_CDS: -1.66 Total: -82.48 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Atomic # 17 Polarization: -1.65 SS G_CDS: -0.08 Total: -1.73 kcal Total: -59.67 3.19 -56.48 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020050993.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.661 kcal (2) G-P(sol) polarization free energy of solvation -59.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds