Wall clock time and date at job start Mon Mar 30 2020 03:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99874 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00281 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00232 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00031 * 3 2 1 7 7 C 1.37876 * 120.00355 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99840 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00339 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47300 * 179.97438 * 9 7 2 11 11 N 1.46506 * 109.47035 * 179.97438 * 10 9 7 12 12 C 1.39745 * 119.99755 * 180.02562 * 11 10 9 13 13 C 1.38897 * 120.06235 * 359.72509 * 12 11 10 14 14 C 1.38106 * 119.93416 * 179.72390 * 13 12 11 15 15 C 1.38377 * 120.06585 * 0.54982 * 14 13 12 16 16 Cl 1.73598 * 119.94188 * 179.70151 * 15 14 13 17 17 C 1.38380 * 120.12061 * 359.72820 * 15 14 13 18 18 C 1.38114 * 120.06313 * 359.97438 * 17 15 14 19 19 H 0.96991 * 119.99886 * 359.97438 * 1 2 3 20 20 H 1.09004 * 109.47043 * 59.99933 * 9 7 2 21 21 H 1.09004 * 109.47476 * 300.00008 * 9 7 2 22 22 H 1.09004 * 109.46930 * 60.00105 * 10 9 7 23 23 H 1.09000 * 109.47312 * 300.00049 * 10 9 7 24 24 H 0.96999 * 120.00080 * 0.02562 * 11 10 9 25 25 H 1.07998 * 120.02939 * 359.97438 * 13 12 11 26 26 H 1.08005 * 119.96724 * 180.25874 * 14 13 12 27 27 H 1.07999 * 119.96832 * 179.97438 * 17 15 14 28 28 H 1.07994 * 120.03195 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 7 5.4867 -2.6364 -0.0022 12 6 6.1854 -3.8466 -0.0028 13 6 5.4922 -5.0503 0.0034 14 6 6.1854 -6.2448 -0.0030 15 6 7.5692 -6.2433 -0.0042 16 17 8.4373 -7.7467 -0.0044 17 6 8.2623 -5.0456 -0.0046 18 6 7.5743 -3.8480 -0.0044 19 1 -0.4849 0.8400 0.0004 20 1 3.8752 -0.6803 0.8889 21 1 3.8746 -0.6800 -0.8911 22 1 3.6579 -3.1505 -0.8908 23 1 3.6586 -3.1502 0.8892 24 1 5.9716 -1.7964 -0.0025 25 1 4.4123 -5.0520 0.0092 26 1 5.6469 -7.1810 -0.0024 27 1 9.3423 -5.0473 -0.0051 28 1 8.1158 -2.9136 -0.0042 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020051201.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:50 Heat of formation + Delta-G solvation = 5.341907 kcal Electronic energy + Delta-G solvation = -12416.225765 eV Core-core repulsion = 10071.242655 eV Total energy + Delta-G solvation = -2344.983110 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.33148 -36.59802 -35.44625 -33.03900 -31.06700 -30.67735 -28.02175 -24.77438 -22.84032 -21.50038 -20.53003 -17.52104 -16.83827 -16.25899 -15.34548 -14.45983 -14.39863 -13.99506 -13.72925 -13.38077 -13.28854 -12.67150 -11.99519 -11.94596 -11.61724 -11.27267 -11.18169 -10.64306 -10.49811 -10.15706 -9.98936 -9.49066 -9.41661 -8.95498 -8.67693 -7.15836 -6.17658 -4.18303 1.43193 1.54112 2.35671 3.21188 3.29431 3.30348 3.77772 3.86814 4.32446 4.89439 4.99077 5.15623 5.40518 5.52458 5.64043 5.92431 6.04121 6.05027 6.21477 6.37727 6.43374 6.46035 6.75767 6.97070 7.14947 7.48768 7.66229 7.98242 8.36624 8.84978 9.42656 10.95174 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.076750 B = 0.004556 C = 0.004315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 364.734123 B = 6143.811207 C = 6488.097077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.070 3.930 3 Si 0.882 3.118 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.525 4.525 8 H 0.075 0.925 9 C -0.021 4.021 10 C 0.131 3.869 11 N -0.738 5.738 12 C 0.233 3.767 13 C -0.190 4.190 14 C -0.058 4.058 15 C -0.107 4.107 16 Cl -0.094 7.094 17 C -0.060 4.060 18 C -0.198 4.198 19 H 0.265 0.735 20 H 0.022 0.978 21 H 0.017 0.983 22 H 0.057 0.943 23 H 0.057 0.943 24 H 0.398 0.602 25 H 0.133 0.867 26 H 0.128 0.872 27 H 0.126 0.874 28 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.367 -9.229 0.017 17.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.132 4.132 3 Si 0.709 3.291 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.563 4.563 8 H 0.093 0.907 9 C -0.059 4.059 10 C 0.008 3.992 11 N -0.363 5.363 12 C 0.125 3.875 13 C -0.213 4.213 14 C -0.078 4.078 15 C -0.136 4.136 16 Cl -0.066 7.066 17 C -0.080 4.080 18 C -0.221 4.221 19 H 0.075 0.925 20 H 0.040 0.960 21 H 0.036 0.964 22 H 0.075 0.925 23 H 0.076 0.924 24 H 0.232 0.768 25 H 0.151 0.849 26 H 0.146 0.854 27 H 0.144 0.856 28 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 15.017 -9.223 0.020 17.623 hybrid contribution 0.550 1.142 -0.021 1.268 sum 15.567 -8.081 -0.001 17.540 Atomic orbital electron populations 1.69894 1.06278 1.27151 1.50204 1.24998 0.94777 0.99202 0.94273 0.86750 0.80254 0.83524 0.78548 1.20201 1.21197 1.19130 1.20891 0.88593 0.94854 1.51988 0.90674 1.19753 0.97904 0.91342 0.96909 1.21551 0.76523 1.00635 1.00524 1.45305 1.07244 1.04589 1.79200 1.18052 0.91045 0.87164 0.91267 1.20690 1.00387 0.90344 1.09905 1.20752 0.91786 0.98299 0.96919 1.20494 0.92187 0.86252 1.14675 1.98318 1.77133 1.33506 1.97604 1.20660 0.99567 0.90307 0.97454 1.20513 0.92148 0.97999 1.11435 0.92482 0.96006 0.96434 0.92468 0.92439 0.76814 0.84915 0.85445 0.85613 0.85667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.81 13.96 55.43 0.77 -26.03 15 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 15 3 Si 0.88 20.84 27.47 -169.99 -4.67 16.17 15 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 15 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 15 6 H -0.27 -6.00 6.54 56.52 0.37 -5.63 15 7 C -0.52 -14.25 9.66 -34.44 -0.33 -14.58 15 8 H 0.08 2.18 7.99 -52.49 -0.42 1.77 15 9 C -0.02 -0.47 4.16 -27.88 -0.12 -0.59 15 10 C 0.13 2.42 4.85 -4.04 -0.02 2.40 15 11 N -0.74 -11.54 5.74 -58.61 -0.34 -11.88 15 12 C 0.23 3.40 6.65 -83.76 -0.56 2.84 15 13 C -0.19 -2.72 9.31 -39.39 -0.37 -3.09 15 14 C -0.06 -0.75 9.82 -39.58 -0.39 -1.14 15 15 C -0.11 -1.37 6.32 -39.48 -0.25 -1.62 15 16 Cl -0.09 -1.10 28.95 -51.86 -1.50 -2.60 15 17 C -0.06 -0.73 9.82 -39.57 -0.39 -1.12 15 18 C -0.20 -2.52 9.90 -39.38 -0.39 -2.91 15 19 H 0.27 7.41 8.31 -40.82 -0.34 7.07 15 20 H 0.02 0.48 7.20 -51.93 -0.37 0.11 15 21 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 15 22 H 0.06 1.07 7.96 -51.93 -0.41 0.66 15 23 H 0.06 1.08 7.94 -51.93 -0.41 0.66 15 24 H 0.40 5.66 8.49 -40.82 -0.35 5.32 15 25 H 0.13 1.89 6.73 -52.49 -0.35 1.54 15 26 H 0.13 1.43 8.06 -52.48 -0.42 1.01 15 27 H 0.13 1.26 8.06 -52.49 -0.42 0.84 15 28 H 0.13 1.36 8.06 -52.49 -0.42 0.93 15 LS Contribution 259.19 15.07 3.91 3.91 Total: -1.00 -28.61 259.19 -7.88 -36.49 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -3.15 Total: 1.89 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: -2.91 Total: -17.96 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: 0.44 Total: -37.91 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.67 Total: 16.17 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -1.50 Total: -2.60 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -28.61 -7.88 -36.49 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020051201.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.836 kcal (2) G-P(sol) polarization free energy of solvation -28.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds