Wall clock time and date at job start Mon Mar 30 2020 03:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99874 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00281 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00232 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00031 * 3 2 1 7 7 C 1.37876 * 120.00355 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99840 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00339 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47300 * 179.97438 * 9 7 2 11 11 N 1.46506 * 109.47035 * 179.97438 * 10 9 7 12 12 C 1.39745 * 119.99755 * 180.02562 * 11 10 9 13 13 C 1.38897 * 120.06235 * 359.72509 * 12 11 10 14 14 C 1.38106 * 119.93416 * 179.72390 * 13 12 11 15 15 C 1.38377 * 120.06585 * 0.54982 * 14 13 12 16 16 Cl 1.73598 * 119.94188 * 179.70151 * 15 14 13 17 17 C 1.38380 * 120.12061 * 359.72820 * 15 14 13 18 18 C 1.38114 * 120.06313 * 359.97438 * 17 15 14 19 19 H 0.96991 * 119.99886 * 359.97438 * 1 2 3 20 20 H 1.09004 * 109.47043 * 59.99933 * 9 7 2 21 21 H 1.09004 * 109.47476 * 300.00008 * 9 7 2 22 22 H 1.09004 * 109.46930 * 60.00105 * 10 9 7 23 23 H 1.09000 * 109.47312 * 300.00049 * 10 9 7 24 24 H 0.96999 * 120.00080 * 0.02562 * 11 10 9 25 25 H 1.07998 * 120.02939 * 359.97438 * 13 12 11 26 26 H 1.08005 * 119.96724 * 180.25874 * 14 13 12 27 27 H 1.07999 * 119.96832 * 179.97438 * 17 15 14 28 28 H 1.07994 * 120.03195 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 7 5.4867 -2.6364 -0.0022 12 6 6.1854 -3.8466 -0.0028 13 6 5.4922 -5.0503 0.0034 14 6 6.1854 -6.2448 -0.0030 15 6 7.5692 -6.2433 -0.0042 16 17 8.4373 -7.7467 -0.0044 17 6 8.2623 -5.0456 -0.0046 18 6 7.5743 -3.8480 -0.0044 19 1 -0.4849 0.8400 0.0004 20 1 3.8752 -0.6803 0.8889 21 1 3.8746 -0.6800 -0.8911 22 1 3.6579 -3.1505 -0.8908 23 1 3.6586 -3.1502 0.8892 24 1 5.9716 -1.7964 -0.0025 25 1 4.4123 -5.0520 0.0092 26 1 5.6469 -7.1810 -0.0024 27 1 9.3423 -5.0473 -0.0051 28 1 8.1158 -2.9136 -0.0042 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020051201.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:50 Heat of formation + Delta-G solvation = -11.440321 kcal Electronic energy + Delta-G solvation = -12416.953497 eV Core-core repulsion = 10071.242655 eV Total energy + Delta-G solvation = -2345.710842 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.39463 -37.68304 -36.70279 -34.93252 -32.52500 -31.89325 -29.36952 -26.40555 -24.04704 -22.75289 -22.02075 -19.11966 -18.36945 -17.35852 -16.54611 -16.26304 -15.93091 -15.16627 -15.02955 -14.59804 -14.41006 -14.34356 -13.41604 -13.32493 -12.99827 -12.69246 -12.31882 -12.06443 -11.96308 -11.79267 -11.62361 -11.46018 -10.82222 -10.66005 -9.95850 -8.31821 -8.30016 -6.38003 0.42482 0.49364 1.36795 1.37278 1.38519 1.49490 2.34310 2.54907 2.83209 3.03531 3.91046 4.03389 4.30246 4.41658 4.46102 4.51669 4.66490 4.79191 5.04008 5.12107 5.26811 5.35177 5.41193 5.43168 5.56228 5.77851 6.19421 6.34921 6.68284 6.88677 7.26862 8.84435 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.076750 B = 0.004556 C = 0.004315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 364.734123 B = 6143.811207 C = 6488.097077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.005 3.995 3 Si 0.954 3.046 4 H -0.267 1.267 5 H -0.286 1.286 6 H -0.243 1.243 7 C -0.535 4.535 8 H 0.036 0.964 9 C -0.015 4.015 10 C 0.148 3.852 11 N -0.738 5.738 12 C 0.214 3.786 13 C -0.206 4.206 14 C -0.063 4.063 15 C -0.111 4.111 16 Cl -0.083 7.083 17 C -0.060 4.060 18 C -0.191 4.191 19 H 0.267 0.733 20 H 0.029 0.971 21 H 0.028 0.972 22 H 0.048 0.952 23 H 0.048 0.952 24 H 0.406 0.594 25 H 0.124 0.876 26 H 0.140 0.860 27 H 0.151 0.849 28 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.164 -8.760 0.017 20.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.192 4.192 3 Si 0.777 3.223 4 H -0.192 1.192 5 H -0.212 1.212 6 H -0.166 1.166 7 C -0.573 4.573 8 H 0.054 0.946 9 C -0.053 4.053 10 C 0.024 3.976 11 N -0.366 5.366 12 C 0.108 3.892 13 C -0.229 4.229 14 C -0.082 4.082 15 C -0.140 4.140 16 Cl -0.055 7.055 17 C -0.079 4.079 18 C -0.214 4.214 19 H 0.076 0.924 20 H 0.047 0.953 21 H 0.046 0.954 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.242 0.758 25 H 0.142 0.858 26 H 0.158 0.842 27 H 0.169 0.831 28 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 17.857 -8.788 0.021 19.903 hybrid contribution -0.303 0.820 -0.023 0.874 sum 17.554 -7.969 -0.002 19.278 Atomic orbital electron populations 1.70056 1.08365 1.28329 1.52057 1.26016 0.95648 1.03637 0.93921 0.85604 0.79539 0.77971 0.79159 1.19212 1.21208 1.16628 1.21259 0.91445 0.93473 1.51168 0.94555 1.19624 0.94460 0.93789 0.97435 1.21083 0.78601 0.98107 0.99816 1.44964 1.05685 1.05505 1.80461 1.18230 0.91930 0.86600 0.92462 1.20760 1.00234 0.91112 1.10777 1.20904 0.92245 0.98409 0.96655 1.20694 0.92271 0.87125 1.13897 1.98325 1.76766 1.32856 1.97519 1.20969 1.00858 0.89704 0.96367 1.20763 0.91294 0.99291 1.10044 0.92372 0.95284 0.95404 0.93340 0.93334 0.75843 0.85834 0.84175 0.83145 0.83430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.14 13.96 21.45 0.30 -57.84 15 2 C 0.01 0.29 5.47 84.65 0.46 0.76 15 3 Si 0.95 42.36 27.47 68.60 1.88 44.24 15 4 H -0.27 -11.41 7.11 99.48 0.71 -10.70 15 5 H -0.29 -12.63 7.11 99.48 0.71 -11.92 15 6 H -0.24 -9.78 6.54 99.48 0.65 -9.13 15 7 C -0.53 -29.61 9.66 25.60 0.25 -29.36 15 8 H 0.04 2.22 7.99 -2.91 -0.02 2.19 15 9 C -0.02 -0.66 4.16 29.85 0.12 -0.54 15 10 C 0.15 5.45 4.85 86.38 0.42 5.87 15 11 N -0.74 -21.96 5.74 -339.36 -1.95 -23.91 15 12 C 0.21 5.91 6.65 38.19 0.25 6.17 15 13 C -0.21 -5.76 9.31 22.40 0.21 -5.55 15 14 C -0.06 -1.55 9.82 22.27 0.22 -1.33 15 15 C -0.11 -2.59 6.32 22.34 0.14 -2.45 15 16 Cl -0.08 -1.75 28.95 -2.72 -0.08 -1.83 15 17 C -0.06 -1.27 9.82 22.27 0.22 -1.05 15 18 C -0.19 -4.34 9.90 22.40 0.22 -4.12 15 19 H 0.27 15.29 8.31 -92.71 -0.77 14.52 15 20 H 0.03 1.22 7.20 -2.38 -0.02 1.21 15 21 H 0.03 1.16 7.57 -2.39 -0.02 1.14 15 22 H 0.05 1.85 7.96 -2.38 -0.02 1.83 15 23 H 0.05 1.85 7.94 -2.39 -0.02 1.83 15 24 H 0.41 10.58 8.49 -92.71 -0.79 9.79 15 25 H 0.12 3.60 6.73 -2.91 -0.02 3.58 15 26 H 0.14 2.98 8.06 -2.91 -0.02 2.96 15 27 H 0.15 2.44 8.06 -2.91 -0.02 2.41 15 28 H 0.15 2.65 8.06 -2.91 -0.02 2.62 15 Total: -1.00 -61.61 259.19 3.00 -58.61 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: 0.32 Total: 12.32 kcal Atomic # 6 Polarization: -34.12 SS G_CDS: 2.52 Total: -31.61 kcal Atomic # 7 Polarization: -80.10 SS G_CDS: -1.65 Total: -81.75 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 1.88 Total: 44.24 kcal Atomic # 17 Polarization: -1.75 SS G_CDS: -0.08 Total: -1.83 kcal Total: -61.61 3.00 -58.61 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020051201.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.175 kcal (2) G-P(sol) polarization free energy of solvation -61.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds