Wall clock time and date at job start Mon Mar 30 2020 03:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38248 * 120.04227 * 2 1 4 4 Cl 1.73599 * 119.97567 * 359.95115 * 3 2 1 5 5 C 1.38387 * 120.04459 * 180.23598 * 3 2 1 6 6 C 1.38284 * 120.13322 * 359.48348 * 5 3 2 7 7 C 1.38082 * 120.09328 * 0.51049 * 6 5 3 8 8 C 1.38867 * 120.04465 * 179.97438 * 2 1 3 9 9 N 1.39670 * 120.06734 * 359.97438 * 8 2 1 10 10 C 1.46500 * 120.00168 * 179.97438 * 9 8 2 11 11 C 1.50697 * 109.47051 * 180.02562 * 10 9 8 12 12 H 1.07998 * 120.00527 * 0.02562 * 11 10 9 13 13 C 1.37879 * 119.99770 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00024 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99997 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47318 * 59.99658 * 15 13 11 17 17 H 1.48501 * 109.47342 * 179.97438 * 15 13 11 18 18 H 1.48507 * 109.47045 * 299.99695 * 15 13 11 19 19 H 1.08994 * 109.47003 * 90.00255 * 1 2 3 20 20 H 1.08999 * 109.46907 * 210.00568 * 1 2 3 21 21 H 1.09006 * 109.46972 * 330.00364 * 1 2 3 22 22 H 1.07995 * 119.92548 * 179.74738 * 5 3 2 23 23 H 1.08004 * 119.95452 * 180.26109 * 6 5 3 24 24 H 1.07998 * 120.03063 * 179.71958 * 7 6 5 25 25 H 0.97002 * 119.99826 * 0.02562 * 9 8 2 26 26 H 1.09002 * 109.47015 * 300.00168 * 10 9 8 27 27 H 1.08999 * 109.46958 * 60.00251 * 10 9 8 28 28 H 0.97005 * 120.00002 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1991 1.1968 0.0000 4 17 1.3316 2.7004 -0.0013 5 6 3.5830 1.1968 -0.0049 6 6 4.2773 0.0009 0.0009 7 6 3.5917 -1.1977 0.0010 8 6 2.2023 -1.2021 0.0005 9 7 1.5063 -2.4130 0.0016 10 6 2.2412 -3.6803 0.0016 11 6 1.2641 -4.8276 0.0023 12 1 0.2020 -4.6324 0.0022 13 6 1.7263 -6.1267 0.0029 14 7 3.0197 -6.3645 0.0025 15 14 0.5152 -7.5489 0.0030 16 1 -0.3384 -7.4723 -1.2098 17 1 1.2601 -8.8335 0.0031 18 1 -0.3392 -7.4714 1.2152 19 1 -0.3633 0.0000 -1.0276 20 1 -0.3633 -0.8899 0.5139 21 1 -0.3633 0.8901 0.5138 22 1 4.1217 2.1328 -0.0091 23 1 5.3573 0.0044 0.0013 24 1 4.1349 -2.1311 0.0010 25 1 0.5363 -2.4149 0.0016 26 1 2.8673 -3.7372 -0.8888 27 1 2.8686 -3.7365 0.8912 28 1 3.3449 -7.2784 0.0025 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032009109.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:04 Heat of formation + Delta-G solvation = -11.563676 kcal Electronic energy + Delta-G solvation = -12808.099687 eV Core-core repulsion = 10462.383496 eV Total energy + Delta-G solvation = -2345.716191 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.57971 -37.61609 -36.48348 -34.68506 -33.45284 -30.70375 -28.57102 -27.46501 -24.99181 -22.33858 -22.20495 -19.17947 -17.81577 -17.30000 -16.54900 -16.06906 -15.46928 -15.42341 -14.81698 -14.47164 -14.16245 -14.07071 -13.33783 -13.27249 -12.91522 -12.84220 -12.42745 -12.37898 -12.30880 -11.98429 -11.66405 -11.44356 -11.04202 -10.54939 -9.52686 -8.31763 -8.20449 -6.45578 0.32552 0.66307 1.20190 1.40937 1.43362 1.51599 2.33316 2.83567 2.87197 3.03793 3.95528 4.08639 4.19067 4.55741 4.61414 4.73405 4.77113 4.79451 5.02095 5.25524 5.28355 5.39673 5.42144 5.50519 5.60001 5.82963 5.94449 6.42575 6.70295 7.08524 7.27575 8.79657 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.052463 B = 0.005921 C = 0.005341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.577503 B = 4728.152127 C = 5241.282461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.179 4.179 3 C 0.007 3.993 4 Cl -0.065 7.065 5 C -0.181 4.181 6 C -0.059 4.059 7 C -0.217 4.217 8 C 0.217 3.783 9 N -0.729 5.729 10 C 0.272 3.728 11 C -0.560 4.560 12 H 0.070 0.930 13 C 0.011 3.989 14 N -0.925 5.925 15 Si 0.976 3.024 16 H -0.266 1.266 17 H -0.281 1.281 18 H -0.266 1.266 19 H 0.073 0.927 20 H 0.060 0.940 21 H 0.081 0.919 22 H 0.150 0.850 23 H 0.153 0.847 24 H 0.108 0.892 25 H 0.398 0.602 26 H -0.006 1.006 27 H -0.006 1.006 28 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.041 13.676 -0.019 13.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.185 4.185 3 C -0.021 4.021 4 Cl -0.036 7.036 5 C -0.202 4.202 6 C -0.078 4.078 7 C -0.241 4.241 8 C 0.109 3.891 9 N -0.356 5.356 10 C 0.149 3.851 11 C -0.598 4.598 12 H 0.088 0.912 13 C -0.189 4.189 14 N -0.563 5.563 15 Si 0.800 3.200 16 H -0.191 1.191 17 H -0.207 1.207 18 H -0.191 1.191 19 H 0.091 0.909 20 H 0.079 0.921 21 H 0.100 0.900 22 H 0.168 0.832 23 H 0.171 0.829 24 H 0.126 0.874 25 H 0.234 0.766 26 H 0.012 0.988 27 H 0.012 0.988 28 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.885 13.450 -0.019 13.581 hybrid contribution -0.587 -0.973 0.000 1.136 sum -2.472 12.477 -0.018 12.719 Atomic orbital electron populations 1.20628 0.89637 1.03054 1.02689 1.19284 0.97266 0.90008 1.11928 1.20580 0.92531 0.85758 1.03193 1.98318 1.77157 1.31341 1.96825 1.20932 0.91463 0.99398 1.08401 1.21042 1.00759 0.90314 0.95662 1.20916 0.92592 0.99484 1.11073 1.17942 0.91906 0.86083 0.93167 1.45252 1.08520 1.02871 1.78918 1.18601 0.92121 0.80311 0.94089 1.21543 0.93743 0.91509 1.52986 0.91191 1.25886 0.97277 1.01823 0.93908 1.70060 1.14515 1.21838 1.49904 0.85338 0.78323 0.77165 0.79222 1.19115 1.20652 1.19104 0.90861 0.92106 0.90027 0.83222 0.82940 0.87366 0.76606 0.98790 0.98803 0.92162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.88 9.18 71.24 0.65 -2.22 15 2 C -0.18 -5.90 5.90 -19.71 -0.12 -6.01 15 3 C 0.01 0.19 6.31 22.31 0.14 0.34 15 4 Cl -0.07 -1.60 27.29 -2.72 -0.07 -1.67 15 5 C -0.18 -4.93 9.83 22.32 0.22 -4.71 15 6 C -0.06 -1.74 10.04 22.24 0.22 -1.52 15 7 C -0.22 -8.14 9.31 22.40 0.21 -7.93 15 8 C 0.22 8.39 6.63 38.21 0.25 8.64 15 9 N -0.73 -31.35 5.62 -343.15 -1.93 -33.28 15 10 C 0.27 14.13 4.67 85.63 0.40 14.53 15 11 C -0.56 -30.40 9.28 25.60 0.24 -30.16 15 12 H 0.07 3.58 7.60 -2.91 -0.02 3.56 15 13 C 0.01 0.61 5.46 84.66 0.46 1.08 15 14 N -0.92 -53.60 13.29 21.45 0.28 -53.32 15 15 Si 0.98 42.21 29.54 68.60 2.03 44.24 15 16 H -0.27 -11.09 7.11 99.48 0.71 -10.38 15 17 H -0.28 -11.92 7.11 99.48 0.71 -11.21 15 18 H -0.27 -11.08 7.11 99.48 0.71 -10.37 15 19 H 0.07 1.91 8.14 -2.39 -0.02 1.89 15 20 H 0.06 1.71 6.55 -2.39 -0.02 1.70 15 21 H 0.08 2.01 6.90 -2.38 -0.02 1.99 15 22 H 0.15 3.19 8.06 -2.91 -0.02 3.17 15 23 H 0.15 3.50 8.06 -2.91 -0.02 3.48 15 24 H 0.11 4.46 6.73 -2.91 -0.02 4.44 15 25 H 0.40 15.80 6.32 -92.71 -0.59 15.22 15 26 H -0.01 -0.32 7.95 -2.39 -0.02 -0.34 15 27 H -0.01 -0.33 7.95 -2.39 -0.02 -0.35 15 28 H 0.27 14.66 8.31 -92.70 -0.77 13.89 15 Total: -1.00 -58.92 256.22 3.58 -55.34 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: 0.59 Total: 16.67 kcal Atomic # 6 Polarization: -30.66 SS G_CDS: 2.68 Total: -27.98 kcal Atomic # 7 Polarization: -84.96 SS G_CDS: -1.65 Total: -86.60 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Atomic # 17 Polarization: -1.60 SS G_CDS: -0.07 Total: -1.67 kcal Total: -58.92 3.58 -55.34 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032009109.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.778 kcal (2) G-P(sol) polarization free energy of solvation -58.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds