Wall clock time and date at job start Mon Mar 30 2020 03:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38130 * 120.02777 * 2 1 4 4 C 1.38239 * 120.09207 * 180.25552 * 3 2 1 5 5 C 1.38433 * 120.13440 * 359.74057 * 4 3 2 6 6 Cl 1.73597 * 119.97637 * 180.02562 * 5 4 3 7 7 C 1.38194 * 120.04584 * 0.02562 * 5 4 3 8 8 C 1.38903 * 120.02514 * 179.76333 * 2 1 3 9 9 N 1.39668 * 120.06671 * 0.02562 * 8 2 1 10 10 C 1.46506 * 120.00181 * 179.72324 * 9 8 2 11 11 C 1.50703 * 109.47289 * 180.02562 * 10 9 8 12 12 H 1.07994 * 119.99399 * 0.02562 * 11 10 9 13 13 C 1.37874 * 119.99789 * 179.97438 * 11 10 9 14 14 N 1.31518 * 120.00144 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99733 * 179.97438 * 13 11 10 16 16 H 1.48490 * 109.47181 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.46716 * 120.00463 * 15 13 11 18 18 H 1.48500 * 109.46999 * 240.00161 * 15 13 11 19 19 H 1.09001 * 109.47042 * 270.23563 * 1 2 3 20 20 H 1.09001 * 109.46657 * 30.23623 * 1 2 3 21 21 H 1.09003 * 109.46491 * 150.23464 * 1 2 3 22 22 H 1.08004 * 119.95547 * 359.97438 * 3 2 1 23 23 H 1.07999 * 119.93719 * 179.71718 * 4 3 2 24 24 H 1.08000 * 120.04278 * 179.97438 * 7 5 4 25 25 H 0.97001 * 120.00568 * 359.72237 * 9 8 2 26 26 H 1.09001 * 109.47060 * 300.00571 * 10 9 8 27 27 H 1.09004 * 109.47073 * 60.00060 * 10 9 8 28 28 H 0.96997 * 119.99752 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1959 0.0000 4 6 3.5806 1.1975 -0.0053 5 6 4.2770 0.0010 -0.0053 6 17 6.0129 0.0078 -0.0113 7 6 3.5911 -1.1987 -0.0004 8 6 2.2021 -1.2026 0.0050 9 7 1.5057 -2.4133 0.0094 10 6 2.2402 -3.6809 0.0085 11 6 1.2627 -4.8279 0.0133 12 1 0.2006 -4.6322 0.0163 13 6 1.7244 -6.1271 0.0129 14 7 3.0178 -6.3653 0.0088 15 14 0.5128 -7.5488 0.0196 16 1 -0.8738 -7.0175 0.0241 17 1 0.7196 -8.3810 -1.1928 18 1 0.7295 -8.3782 1.2321 19 1 -0.3633 0.0042 1.0277 20 1 -0.3633 0.8879 -0.5175 21 1 -0.3632 -0.8921 -0.5102 22 1 1.6580 2.1311 -0.0004 23 1 4.1185 2.1340 -0.0099 24 1 4.1344 -2.1321 -0.0008 25 1 0.5357 -2.4149 0.0131 26 1 2.8636 -3.7390 -0.8837 27 1 2.8703 -3.7363 0.8963 28 1 3.3426 -7.2793 0.0088 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032009111.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:19 Heat of formation + Delta-G solvation = 2.200478 kcal Electronic energy + Delta-G solvation = -12783.739713 eV Core-core repulsion = 10438.620380 eV Total energy + Delta-G solvation = -2345.119333 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.20693 -36.29054 -34.93782 -32.74141 -32.01909 -29.31393 -26.92193 -25.94494 -23.21306 -20.91401 -20.79608 -17.49986 -16.20912 -15.59511 -14.96134 -14.49480 -13.94001 -13.86301 -13.18956 -13.07376 -12.69849 -12.45685 -12.33127 -11.98560 -11.18784 -11.10458 -10.90520 -10.83503 -10.79677 -10.54940 -10.17958 -9.48950 -9.43217 -8.59112 -8.23615 -6.67253 -6.24923 -4.30847 1.63728 2.00886 2.52738 3.19356 3.26996 3.30079 4.15902 4.20307 4.47775 5.12422 5.15420 5.34578 5.47729 5.67071 5.85731 5.88821 6.06086 6.20568 6.30220 6.63277 6.78423 6.88324 6.98351 7.25714 7.35783 7.57685 7.88476 8.16381 8.56818 8.82537 9.35837 10.85637 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.030768 B = 0.006956 C = 0.005697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.819701 B = 4024.165587 C = 4913.535872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.182 4.182 3 C -0.061 4.061 4 C -0.194 4.194 5 C 0.016 3.984 6 Cl -0.088 7.088 7 C -0.194 4.194 8 C 0.245 3.755 9 N -0.722 5.722 10 C 0.247 3.753 11 C -0.540 4.540 12 H 0.063 0.937 13 C 0.064 3.936 14 N -0.887 5.887 15 Si 0.904 3.096 16 H -0.272 1.272 17 H -0.281 1.281 18 H -0.281 1.281 19 H 0.062 0.938 20 H 0.061 0.939 21 H 0.061 0.939 22 H 0.121 0.879 23 H 0.120 0.880 24 H 0.135 0.865 25 H 0.394 0.606 26 H 0.023 0.977 27 H 0.023 0.977 28 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.015 12.222 -0.014 12.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.188 4.188 3 C -0.080 4.080 4 C -0.216 4.216 5 C -0.011 4.011 6 Cl -0.060 7.060 7 C -0.218 4.218 8 C 0.134 3.866 9 N -0.345 5.345 10 C 0.126 3.874 11 C -0.579 4.579 12 H 0.081 0.919 13 C -0.139 4.139 14 N -0.525 5.525 15 Si 0.731 3.269 16 H -0.196 1.196 17 H -0.207 1.207 18 H -0.207 1.207 19 H 0.081 0.919 20 H 0.080 0.920 21 H 0.079 0.921 22 H 0.139 0.861 23 H 0.138 0.862 24 H 0.153 0.847 25 H 0.229 0.771 26 H 0.040 0.960 27 H 0.041 0.959 28 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.628 11.805 -0.016 11.821 hybrid contribution -0.630 -0.914 0.004 1.110 sum -1.258 10.891 -0.011 10.963 Atomic orbital electron populations 1.20543 0.91530 1.02091 1.01640 1.19402 0.95802 0.91850 1.11721 1.20541 0.92993 0.96681 0.97823 1.20519 0.93982 0.96026 1.11024 1.20552 0.83087 0.94761 1.02683 1.98330 1.11663 1.98997 1.96977 1.20546 0.92661 0.97523 1.11048 1.17685 0.90734 0.86727 0.91414 1.45628 1.08551 1.03559 1.76758 1.19189 0.92769 0.78607 0.96835 1.21196 0.93060 0.90617 1.52987 0.91921 1.24929 0.95451 0.98959 0.94572 1.69955 1.12501 1.20920 1.49095 0.86352 0.80945 0.81796 0.77807 1.19635 1.20740 1.20731 0.91926 0.91979 0.92050 0.86108 0.86228 0.84691 0.77063 0.95964 0.95937 0.92432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.33 9.57 36.01 0.34 -0.99 15 2 C -0.18 -2.92 5.90 -104.41 -0.62 -3.54 15 3 C -0.06 -0.88 9.69 -39.62 -0.38 -1.26 15 4 C -0.19 -2.92 9.83 -39.51 -0.39 -3.30 15 5 C 0.02 0.28 6.32 -39.53 -0.25 0.03 15 6 Cl -0.09 -1.38 28.95 -51.86 -1.50 -2.88 15 7 C -0.19 -3.74 9.09 -39.35 -0.36 -4.10 15 8 C 0.25 4.68 6.63 -83.79 -0.56 4.12 15 9 N -0.72 -15.01 5.62 -59.80 -0.34 -15.34 15 10 C 0.25 6.19 4.67 -5.19 -0.02 6.17 15 11 C -0.54 -14.42 9.28 -34.44 -0.32 -14.74 15 12 H 0.06 1.60 7.60 -52.49 -0.40 1.21 15 13 C 0.06 1.75 5.46 -17.82 -0.10 1.65 15 14 N -0.89 -25.34 13.29 55.43 0.74 -24.61 15 15 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 15 16 H -0.27 -6.06 7.11 56.52 0.40 -5.66 15 17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 19 H 0.06 0.77 8.14 -51.93 -0.42 0.35 15 20 H 0.06 0.68 8.09 -51.93 -0.42 0.26 15 21 H 0.06 0.83 6.55 -51.93 -0.34 0.49 15 22 H 0.12 1.36 8.06 -52.48 -0.42 0.94 15 23 H 0.12 1.53 8.06 -52.49 -0.42 1.11 15 24 H 0.14 2.82 6.73 -52.49 -0.35 2.47 15 25 H 0.39 7.56 6.32 -40.82 -0.26 7.30 15 26 H 0.02 0.60 7.95 -51.93 -0.41 0.19 15 27 H 0.02 0.61 7.95 -51.93 -0.41 0.20 15 28 H 0.27 7.14 8.31 -40.82 -0.34 6.80 15 LS Contribution 258.90 15.07 3.90 3.90 Total: -1.00 -27.71 258.90 -7.87 -35.58 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -3.00 Total: 3.68 kcal Atomic # 6 Polarization: -13.30 SS G_CDS: -2.65 Total: -15.95 kcal Atomic # 7 Polarization: -40.35 SS G_CDS: 0.40 Total: -39.95 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 17 Polarization: -1.38 SS G_CDS: -1.50 Total: -2.88 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -27.71 -7.87 -35.58 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032009111.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.781 kcal (2) G-P(sol) polarization free energy of solvation -27.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds