Wall clock time and date at job start Mon Mar 30 2020 03:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38130 * 120.02777 * 2 1 4 4 C 1.38239 * 120.09207 * 180.25552 * 3 2 1 5 5 C 1.38433 * 120.13440 * 359.74057 * 4 3 2 6 6 Cl 1.73597 * 119.97637 * 180.02562 * 5 4 3 7 7 C 1.38194 * 120.04584 * 0.02562 * 5 4 3 8 8 C 1.38903 * 120.02514 * 179.76333 * 2 1 3 9 9 N 1.39668 * 120.06671 * 0.02562 * 8 2 1 10 10 C 1.46506 * 120.00181 * 179.72324 * 9 8 2 11 11 C 1.50703 * 109.47289 * 180.02562 * 10 9 8 12 12 H 1.07994 * 119.99399 * 0.02562 * 11 10 9 13 13 C 1.37874 * 119.99789 * 179.97438 * 11 10 9 14 14 N 1.31518 * 120.00144 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99733 * 179.97438 * 13 11 10 16 16 H 1.48490 * 109.47181 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.46716 * 120.00463 * 15 13 11 18 18 H 1.48500 * 109.46999 * 240.00161 * 15 13 11 19 19 H 1.09001 * 109.47042 * 270.23563 * 1 2 3 20 20 H 1.09001 * 109.46657 * 30.23623 * 1 2 3 21 21 H 1.09003 * 109.46491 * 150.23464 * 1 2 3 22 22 H 1.08004 * 119.95547 * 359.97438 * 3 2 1 23 23 H 1.07999 * 119.93719 * 179.71718 * 4 3 2 24 24 H 1.08000 * 120.04278 * 179.97438 * 7 5 4 25 25 H 0.97001 * 120.00568 * 359.72237 * 9 8 2 26 26 H 1.09001 * 109.47060 * 300.00571 * 10 9 8 27 27 H 1.09004 * 109.47073 * 60.00060 * 10 9 8 28 28 H 0.96997 * 119.99752 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1959 0.0000 4 6 3.5806 1.1975 -0.0053 5 6 4.2770 0.0010 -0.0053 6 17 6.0129 0.0078 -0.0113 7 6 3.5911 -1.1987 -0.0004 8 6 2.2021 -1.2026 0.0050 9 7 1.5057 -2.4133 0.0094 10 6 2.2402 -3.6809 0.0085 11 6 1.2627 -4.8279 0.0133 12 1 0.2006 -4.6322 0.0163 13 6 1.7244 -6.1271 0.0129 14 7 3.0178 -6.3653 0.0088 15 14 0.5128 -7.5488 0.0196 16 1 -0.8738 -7.0175 0.0241 17 1 0.7196 -8.3810 -1.1928 18 1 0.7295 -8.3782 1.2321 19 1 -0.3633 0.0042 1.0277 20 1 -0.3633 0.8879 -0.5175 21 1 -0.3632 -0.8921 -0.5102 22 1 1.6580 2.1311 -0.0004 23 1 4.1185 2.1340 -0.0099 24 1 4.1344 -2.1321 -0.0008 25 1 0.5357 -2.4149 0.0131 26 1 2.8636 -3.7390 -0.8837 27 1 2.8703 -3.7363 0.8963 28 1 3.3426 -7.2793 0.0088 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032009111.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:19 Heat of formation + Delta-G solvation = -13.565641 kcal Electronic energy + Delta-G solvation = -12784.423383 eV Core-core repulsion = 10438.620380 eV Total energy + Delta-G solvation = -2345.803003 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.56553 -37.62798 -36.55732 -34.63015 -33.32266 -30.89301 -28.55643 -27.31810 -25.04163 -22.39872 -22.16477 -19.21273 -17.85359 -17.24843 -16.51776 -16.05147 -15.38773 -15.28918 -14.80292 -14.38328 -14.31882 -14.03752 -13.69518 -13.27337 -12.86221 -12.85125 -12.32832 -12.23911 -12.20714 -12.06857 -11.74081 -11.43480 -11.05946 -10.57401 -9.54110 -8.32628 -8.20234 -6.47155 0.31798 0.67668 1.21877 1.40353 1.40492 1.53939 2.32460 2.82465 2.85799 3.03075 3.95448 4.12868 4.28307 4.46225 4.61891 4.81569 4.88056 4.90313 5.02162 5.22115 5.24972 5.34416 5.46431 5.50080 5.60774 5.82691 5.98511 6.40881 6.68986 7.10031 7.26815 8.79494 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.030768 B = 0.006956 C = 0.005697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.819701 B = 4024.165587 C = 4913.535872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.175 4.175 3 C -0.053 4.053 4 C -0.179 4.179 5 C 0.003 3.997 6 Cl -0.081 7.081 7 C -0.220 4.220 8 C 0.215 3.785 9 N -0.728 5.728 10 C 0.270 3.730 11 C -0.556 4.556 12 H 0.073 0.927 13 C 0.009 3.991 14 N -0.927 5.927 15 Si 0.979 3.021 16 H -0.258 1.258 17 H -0.277 1.277 18 H -0.277 1.277 19 H 0.073 0.927 20 H 0.092 0.908 21 H 0.052 0.948 22 H 0.167 0.833 23 H 0.151 0.849 24 H 0.101 0.899 25 H 0.401 0.599 26 H -0.011 1.011 27 H -0.010 1.010 28 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.839 14.161 -0.013 14.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.180 4.180 3 C -0.072 4.072 4 C -0.200 4.200 5 C -0.024 4.024 6 Cl -0.052 7.052 7 C -0.244 4.244 8 C 0.107 3.893 9 N -0.355 5.355 10 C 0.147 3.853 11 C -0.594 4.594 12 H 0.091 0.909 13 C -0.191 4.191 14 N -0.566 5.566 15 Si 0.803 3.197 16 H -0.182 1.182 17 H -0.203 1.203 18 H -0.203 1.203 19 H 0.092 0.908 20 H 0.111 0.889 21 H 0.071 0.929 22 H 0.184 0.816 23 H 0.168 0.832 24 H 0.120 0.880 25 H 0.238 0.762 26 H 0.007 0.993 27 H 0.007 0.993 28 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.451 13.803 -0.015 14.019 hybrid contribution 0.018 -1.339 0.004 1.339 sum -2.433 12.464 -0.011 12.699 Atomic orbital electron populations 1.20629 0.89223 1.03216 1.02718 1.19826 0.97573 0.91013 1.09582 1.21066 0.92796 0.97699 0.95638 1.20977 0.94651 0.96137 1.08238 1.20703 0.83706 0.94797 1.03208 1.98327 1.10979 1.98982 1.96955 1.20466 0.93281 0.97336 1.13318 1.17979 0.90784 0.87225 0.93280 1.45200 1.08519 1.02789 1.78987 1.18587 0.92192 0.80799 0.93742 1.21590 0.93740 0.91353 1.52722 0.90892 1.25940 0.97286 1.01991 0.93884 1.70096 1.14708 1.21710 1.50090 0.85193 0.78847 0.77888 0.77822 1.18213 1.20306 1.20294 0.90785 0.88891 0.92871 0.81569 0.83168 0.88046 0.76223 0.99293 0.99259 0.92209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.34 9.57 71.24 0.68 -1.66 15 2 C -0.17 -5.21 5.90 -19.73 -0.12 -5.33 15 3 C -0.05 -1.31 9.69 22.24 0.22 -1.10 15 4 C -0.18 -4.83 9.83 22.32 0.22 -4.61 15 5 C 0.00 0.10 6.32 22.31 0.14 0.24 15 6 Cl -0.08 -2.52 28.95 -2.72 -0.08 -2.60 15 7 C -0.22 -8.88 9.09 22.42 0.20 -8.67 15 8 C 0.21 8.32 6.63 38.21 0.25 8.58 15 9 N -0.73 -31.40 5.62 -343.12 -1.93 -33.33 15 10 C 0.27 14.40 4.67 85.63 0.40 14.80 15 11 C -0.56 -30.50 9.28 25.60 0.24 -30.26 15 12 H 0.07 3.75 7.60 -2.91 -0.02 3.73 15 13 C 0.01 0.49 5.46 84.65 0.46 0.95 15 14 N -0.93 -54.92 13.29 21.45 0.28 -54.63 15 15 Si 0.98 42.58 29.54 68.60 2.03 44.61 15 16 H -0.26 -10.59 7.11 99.48 0.71 -9.88 15 17 H -0.28 -11.82 7.11 99.48 0.71 -11.11 15 18 H -0.28 -11.81 7.11 99.48 0.71 -11.11 15 19 H 0.07 1.58 8.14 -2.39 -0.02 1.56 15 20 H 0.09 1.59 8.09 -2.39 -0.02 1.57 15 21 H 0.05 1.33 6.55 -2.39 -0.02 1.32 15 22 H 0.17 2.66 8.06 -2.91 -0.02 2.64 15 23 H 0.15 3.16 8.06 -2.91 -0.02 3.14 15 24 H 0.10 4.68 6.73 -2.91 -0.02 4.67 15 25 H 0.40 15.62 6.32 -92.71 -0.59 15.04 15 26 H -0.01 -0.63 7.95 -2.39 -0.02 -0.65 15 27 H -0.01 -0.61 7.95 -2.38 -0.02 -0.63 15 28 H 0.27 14.86 8.31 -92.71 -0.77 14.09 15 Total: -1.00 -62.23 258.90 3.58 -58.64 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: 0.58 Total: 14.37 kcal Atomic # 6 Polarization: -29.76 SS G_CDS: 2.70 Total: -27.06 kcal Atomic # 7 Polarization: -86.31 SS G_CDS: -1.64 Total: -87.96 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Atomic # 17 Polarization: -2.52 SS G_CDS: -0.08 Total: -2.60 kcal Total: -62.23 3.58 -58.64 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032009111.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.075 kcal (2) G-P(sol) polarization free energy of solvation -62.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds