Wall clock time and date at job start Mon Mar 30 2020 03:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38131 * 120.03310 * 2 1 4 4 C 1.38355 * 120.06079 * 180.31711 * 3 2 1 5 5 Cl 1.73603 * 119.93960 * 179.69870 * 4 3 2 6 6 C 1.38400 * 120.12690 * 359.67908 * 4 3 2 7 7 C 1.38092 * 120.05813 * 0.02562 * 6 4 3 8 8 C 1.38871 * 120.02928 * 179.71787 * 2 1 3 9 9 N 1.39745 * 120.06433 * 359.97438 * 8 2 1 10 10 C 1.46499 * 120.00107 * 179.72679 * 9 8 2 11 11 C 1.50701 * 109.46992 * 179.97438 * 10 9 8 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99734 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47432 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.46890 * 120.00210 * 15 13 11 18 18 H 1.48501 * 109.47062 * 240.00257 * 15 13 11 19 19 H 1.08995 * 109.47487 * 270.28177 * 1 2 3 20 20 H 1.09010 * 109.46998 * 30.28084 * 1 2 3 21 21 H 1.08998 * 109.47224 * 150.27928 * 1 2 3 22 22 H 1.08007 * 119.96700 * 0.02562 * 3 2 1 23 23 H 1.07995 * 119.97118 * 179.97438 * 6 4 3 24 24 H 1.07994 * 120.02789 * 179.97438 * 7 6 4 25 25 H 0.97000 * 119.99472 * 359.71801 * 9 8 2 26 26 H 1.09002 * 109.47391 * 59.99564 * 10 9 8 27 27 H 1.09001 * 109.46813 * 299.99621 * 10 9 8 28 28 H 0.97002 * 119.99768 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1958 0.0000 4 6 3.5819 1.1965 -0.0066 5 17 4.4475 2.7013 -0.0145 6 6 4.2771 -0.0002 -0.0066 7 6 3.5911 -1.1986 -0.0004 8 6 2.2020 -1.2023 0.0059 9 7 1.5052 -2.4136 0.0124 10 6 2.2397 -3.6812 0.0126 11 6 1.2623 -4.8282 0.0208 12 1 0.2002 -4.6325 0.0251 13 6 1.7239 -6.1274 0.0219 14 7 3.0173 -6.3656 0.0163 15 14 0.5123 -7.5490 0.0314 16 1 -0.8744 -7.0177 0.0361 17 1 0.7183 -8.3830 -1.1800 18 1 0.7299 -8.3767 1.2450 19 1 -0.3634 0.0051 1.0276 20 1 -0.3633 0.8875 -0.5182 21 1 -0.3633 -0.8925 -0.5095 22 1 1.6583 2.1312 0.0004 23 1 5.3570 0.0033 -0.0122 24 1 4.1341 -2.1321 -0.0008 25 1 0.5352 -2.4151 0.0169 26 1 2.8706 -3.7355 0.8999 27 1 2.8624 -3.7404 -0.8801 28 1 3.3421 -7.2796 0.0174 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032009112.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:21 Heat of formation + Delta-G solvation = 1.401317 kcal Electronic energy + Delta-G solvation = -12720.423296 eV Core-core repulsion = 10375.269309 eV Total energy + Delta-G solvation = -2345.153987 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.21565 -36.28175 -34.82006 -32.77619 -32.21299 -29.12334 -27.01696 -25.98777 -23.21087 -21.01424 -20.70423 -17.44882 -16.21159 -15.62524 -15.25119 -14.54069 -13.94141 -13.70927 -13.19016 -12.82302 -12.71787 -12.44050 -12.34007 -12.04438 -11.39614 -11.15594 -11.03257 -10.84986 -10.82505 -10.42315 -10.19458 -9.45102 -9.32712 -8.58797 -8.45606 -6.62935 -6.27519 -4.33191 1.73009 1.90324 2.62217 3.17782 3.25593 3.28633 4.16079 4.18484 4.45518 5.10064 5.15049 5.22891 5.48027 5.67049 5.85102 5.90110 6.00635 6.18425 6.42164 6.61349 6.72930 6.82645 6.98163 7.23463 7.33068 7.55754 7.86071 8.14896 8.54682 8.80263 9.33593 10.83050 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.054807 B = 0.005562 C = 0.005068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.761471 B = 5032.871495 C = 5523.182444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.176 4.176 3 C -0.060 4.060 4 C -0.113 4.113 5 Cl -0.102 7.102 6 C -0.062 4.062 7 C -0.190 4.190 8 C 0.240 3.760 9 N -0.722 5.722 10 C 0.248 3.752 11 C -0.541 4.541 12 H 0.063 0.937 13 C 0.064 3.936 14 N -0.888 5.888 15 Si 0.904 3.096 16 H -0.272 1.272 17 H -0.281 1.281 18 H -0.281 1.281 19 H 0.063 0.937 20 H 0.062 0.938 21 H 0.062 0.938 22 H 0.122 0.878 23 H 0.123 0.877 24 H 0.134 0.866 25 H 0.393 0.607 26 H 0.023 0.977 27 H 0.023 0.977 28 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.152 12.156 -0.029 12.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.182 4.182 3 C -0.080 4.080 4 C -0.142 4.142 5 Cl -0.073 7.073 6 C -0.081 4.081 7 C -0.214 4.214 8 C 0.129 3.871 9 N -0.344 5.344 10 C 0.126 3.874 11 C -0.579 4.579 12 H 0.081 0.919 13 C -0.139 4.139 14 N -0.525 5.525 15 Si 0.731 3.269 16 H -0.196 1.196 17 H -0.207 1.207 18 H -0.207 1.207 19 H 0.081 0.919 20 H 0.081 0.919 21 H 0.081 0.919 22 H 0.140 0.860 23 H 0.141 0.859 24 H 0.151 0.849 25 H 0.228 0.772 26 H 0.041 0.959 27 H 0.041 0.959 28 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.848 11.868 -0.032 11.898 hybrid contribution -0.724 -0.758 0.008 1.048 sum -1.572 11.110 -0.024 11.221 Atomic orbital electron populations 1.20532 0.91286 1.02168 1.01725 1.19213 0.95706 0.91255 1.12012 1.20465 0.91676 0.97300 0.98548 1.20358 0.91960 0.85805 1.16064 1.98295 1.77451 1.33870 1.97731 1.20686 0.99490 0.90322 0.97635 1.20691 0.92491 0.98215 1.09955 1.17967 0.91612 0.86532 0.91025 1.45691 1.08609 1.03653 1.76470 1.19185 0.92768 0.78592 0.96816 1.21208 0.93094 0.90633 1.52961 0.91924 1.24928 0.95473 0.98973 0.94558 1.69947 1.12500 1.20933 1.49134 0.86351 0.80954 0.81774 0.77819 1.19627 1.20728 1.20721 0.91863 0.91937 0.91931 0.86045 0.85857 0.84850 0.77168 0.95916 0.95938 0.92429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.33 9.57 36.00 0.34 -0.99 15 2 C -0.18 -2.84 5.90 -104.43 -0.62 -3.46 15 3 C -0.06 -0.91 9.48 -39.58 -0.38 -1.29 15 4 C -0.11 -1.76 6.32 -39.48 -0.25 -2.01 15 5 Cl -0.10 -1.40 28.95 -51.86 -1.50 -2.90 15 6 C -0.06 -1.00 9.82 -39.58 -0.39 -1.39 15 7 C -0.19 -3.49 9.31 -39.38 -0.37 -3.86 15 8 C 0.24 4.48 6.63 -83.76 -0.56 3.92 15 9 N -0.72 -14.74 5.63 -59.80 -0.34 -15.08 15 10 C 0.25 6.08 4.67 -5.19 -0.02 6.05 15 11 C -0.54 -14.27 9.28 -34.44 -0.32 -14.59 15 12 H 0.06 1.59 7.60 -52.49 -0.40 1.19 15 13 C 0.06 1.73 5.46 -17.82 -0.10 1.63 15 14 N -0.89 -25.00 13.29 55.43 0.74 -24.27 15 15 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 15 16 H -0.27 -6.02 7.11 56.52 0.40 -5.62 15 17 H -0.28 -6.34 7.11 56.52 0.40 -5.94 15 18 H -0.28 -6.33 7.11 56.52 0.40 -5.93 15 19 H 0.06 0.79 8.14 -51.93 -0.42 0.36 15 20 H 0.06 0.70 8.09 -51.92 -0.42 0.28 15 21 H 0.06 0.84 6.55 -51.93 -0.34 0.50 15 22 H 0.12 1.56 8.06 -52.48 -0.42 1.14 15 23 H 0.12 1.75 8.06 -52.49 -0.42 1.33 15 24 H 0.13 2.57 6.73 -52.49 -0.35 2.22 15 25 H 0.39 7.46 6.32 -40.82 -0.26 7.20 15 26 H 0.02 0.60 7.95 -51.93 -0.41 0.19 15 27 H 0.02 0.60 7.95 -51.93 -0.41 0.18 15 28 H 0.27 7.05 8.31 -40.82 -0.34 6.71 15 LS Contribution 258.91 15.07 3.90 3.90 Total: -1.00 -27.16 258.91 -7.87 -35.03 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -3.00 Total: 3.82 kcal Atomic # 6 Polarization: -13.31 SS G_CDS: -2.65 Total: -15.96 kcal Atomic # 7 Polarization: -39.75 SS G_CDS: 0.40 Total: -39.35 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Atomic # 17 Polarization: -1.40 SS G_CDS: -1.50 Total: -2.90 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -27.16 -7.87 -35.03 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032009112.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.433 kcal (2) G-P(sol) polarization free energy of solvation -27.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds