Wall clock time and date at job start Mon Mar 30 2020 03:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38131 * 120.03310 * 2 1 4 4 C 1.38355 * 120.06079 * 180.31711 * 3 2 1 5 5 Cl 1.73603 * 119.93960 * 179.69870 * 4 3 2 6 6 C 1.38400 * 120.12690 * 359.67908 * 4 3 2 7 7 C 1.38092 * 120.05813 * 0.02562 * 6 4 3 8 8 C 1.38871 * 120.02928 * 179.71787 * 2 1 3 9 9 N 1.39745 * 120.06433 * 359.97438 * 8 2 1 10 10 C 1.46499 * 120.00107 * 179.72679 * 9 8 2 11 11 C 1.50701 * 109.46992 * 179.97438 * 10 9 8 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99734 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47432 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.46890 * 120.00210 * 15 13 11 18 18 H 1.48501 * 109.47062 * 240.00257 * 15 13 11 19 19 H 1.08995 * 109.47487 * 270.28177 * 1 2 3 20 20 H 1.09010 * 109.46998 * 30.28084 * 1 2 3 21 21 H 1.08998 * 109.47224 * 150.27928 * 1 2 3 22 22 H 1.08007 * 119.96700 * 0.02562 * 3 2 1 23 23 H 1.07995 * 119.97118 * 179.97438 * 6 4 3 24 24 H 1.07994 * 120.02789 * 179.97438 * 7 6 4 25 25 H 0.97000 * 119.99472 * 359.71801 * 9 8 2 26 26 H 1.09002 * 109.47391 * 59.99564 * 10 9 8 27 27 H 1.09001 * 109.46813 * 299.99621 * 10 9 8 28 28 H 0.97002 * 119.99768 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1958 0.0000 4 6 3.5819 1.1965 -0.0066 5 17 4.4475 2.7013 -0.0145 6 6 4.2771 -0.0002 -0.0066 7 6 3.5911 -1.1986 -0.0004 8 6 2.2020 -1.2023 0.0059 9 7 1.5052 -2.4136 0.0124 10 6 2.2397 -3.6812 0.0126 11 6 1.2623 -4.8282 0.0208 12 1 0.2002 -4.6325 0.0251 13 6 1.7239 -6.1274 0.0219 14 7 3.0173 -6.3656 0.0163 15 14 0.5123 -7.5490 0.0314 16 1 -0.8744 -7.0177 0.0361 17 1 0.7183 -8.3830 -1.1800 18 1 0.7299 -8.3767 1.2450 19 1 -0.3634 0.0051 1.0276 20 1 -0.3633 0.8875 -0.5182 21 1 -0.3633 -0.8925 -0.5095 22 1 1.6583 2.1312 0.0004 23 1 5.3570 0.0033 -0.0122 24 1 4.1341 -2.1321 -0.0008 25 1 0.5352 -2.4151 0.0169 26 1 2.8706 -3.7355 0.8999 27 1 2.8624 -3.7404 -0.8801 28 1 3.3421 -7.2796 0.0174 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032009112.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:21 Heat of formation + Delta-G solvation = -13.439717 kcal Electronic energy + Delta-G solvation = -12721.066851 eV Core-core repulsion = 10375.269309 eV Total energy + Delta-G solvation = -2345.797542 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.57195 -37.56109 -36.40778 -34.59353 -33.56000 -30.70070 -28.53525 -27.44392 -25.01376 -22.44178 -22.11933 -19.16992 -17.76412 -17.26267 -16.73616 -16.20368 -15.36550 -15.10228 -14.79490 -14.35129 -14.16580 -13.96080 -13.56536 -13.40697 -12.87979 -12.86576 -12.48640 -12.31622 -12.27246 -12.05621 -11.60129 -11.39778 -10.93875 -10.47423 -9.73731 -8.32153 -8.13301 -6.45833 0.42264 0.55367 1.37676 1.40661 1.41115 1.54050 2.32872 2.81430 2.85168 3.03725 3.90865 3.98274 4.31707 4.44755 4.59933 4.71672 4.86082 4.98668 5.01971 5.23362 5.27793 5.33343 5.40373 5.49600 5.53534 5.82020 5.93638 6.42055 6.70133 7.09718 7.27628 8.79728 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.054807 B = 0.005562 C = 0.005068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.761471 B = 5032.871495 C = 5523.182444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.168 4.168 3 C -0.058 4.058 4 C -0.109 4.109 5 Cl -0.080 7.080 6 C -0.065 4.065 7 C -0.210 4.210 8 C 0.212 3.788 9 N -0.727 5.727 10 C 0.269 3.731 11 C -0.557 4.557 12 H 0.071 0.929 13 C 0.010 3.990 14 N -0.925 5.925 15 Si 0.976 3.024 16 H -0.260 1.260 17 H -0.278 1.278 18 H -0.278 1.278 19 H 0.074 0.926 20 H 0.089 0.911 21 H 0.057 0.943 22 H 0.153 0.847 23 H 0.139 0.861 24 H 0.110 0.890 25 H 0.400 0.600 26 H -0.006 1.006 27 H -0.007 1.007 28 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.597 13.625 -0.025 13.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.174 4.174 3 C -0.078 4.078 4 C -0.138 4.138 5 Cl -0.051 7.051 6 C -0.084 4.084 7 C -0.233 4.233 8 C 0.104 3.896 9 N -0.353 5.353 10 C 0.146 3.854 11 C -0.595 4.595 12 H 0.089 0.911 13 C -0.190 4.190 14 N -0.564 5.564 15 Si 0.800 3.200 16 H -0.184 1.184 17 H -0.203 1.203 18 H -0.203 1.203 19 H 0.093 0.907 20 H 0.107 0.893 21 H 0.075 0.925 22 H 0.171 0.829 23 H 0.157 0.843 24 H 0.128 0.872 25 H 0.236 0.764 26 H 0.011 0.989 27 H 0.011 0.989 28 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.293 13.397 -0.028 13.592 hybrid contribution -0.182 -1.021 0.006 1.037 sum -2.475 12.376 -0.022 12.622 Atomic orbital electron populations 1.20614 0.89054 1.03238 1.02799 1.19557 0.97389 0.90373 1.10055 1.20819 0.91589 0.98083 0.97264 1.20549 0.92569 0.86409 1.14273 1.98308 1.77070 1.32186 1.97564 1.20821 1.00378 0.89911 0.97310 1.20670 0.92859 0.98327 1.11456 1.18233 0.91839 0.86840 0.92722 1.45285 1.08583 1.02902 1.78575 1.18619 0.92191 0.80531 0.94056 1.21598 0.93764 0.91432 1.52683 0.91062 1.25901 0.97266 1.01899 0.93966 1.70077 1.14552 1.21698 1.50082 0.85228 0.78891 0.78030 0.77817 1.18373 1.20328 1.20313 0.90712 0.89250 0.92453 0.82943 0.84281 0.87190 0.76400 0.98854 0.98881 0.92206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.40 9.57 71.24 0.68 -1.72 15 2 C -0.17 -5.14 5.90 -19.74 -0.12 -5.25 15 3 C -0.06 -1.59 9.48 22.27 0.21 -1.38 15 4 C -0.11 -3.16 6.32 22.34 0.14 -3.02 15 5 Cl -0.08 -1.98 28.95 -2.72 -0.08 -2.06 15 6 C -0.06 -2.07 9.82 22.27 0.22 -1.85 15 7 C -0.21 -7.97 9.31 22.40 0.21 -7.76 15 8 C 0.21 7.99 6.63 38.19 0.25 8.25 15 9 N -0.73 -30.55 5.63 -343.09 -1.93 -32.48 15 10 C 0.27 13.89 4.67 85.63 0.40 14.29 15 11 C -0.56 -29.98 9.28 25.60 0.24 -29.74 15 12 H 0.07 3.62 7.60 -2.91 -0.02 3.60 15 13 C 0.01 0.53 5.46 84.66 0.46 0.99 15 14 N -0.93 -53.62 13.29 21.45 0.28 -53.33 15 15 Si 0.98 42.04 29.54 68.60 2.03 44.06 15 16 H -0.26 -10.60 7.11 99.48 0.71 -9.89 15 17 H -0.28 -11.71 7.11 99.48 0.71 -11.01 15 18 H -0.28 -11.71 7.11 99.48 0.71 -11.00 15 19 H 0.07 1.64 8.14 -2.39 -0.02 1.62 15 20 H 0.09 1.66 8.09 -2.38 -0.02 1.64 15 21 H 0.06 1.44 6.55 -2.39 -0.02 1.43 15 22 H 0.15 3.23 8.06 -2.91 -0.02 3.21 15 23 H 0.14 3.88 8.06 -2.91 -0.02 3.85 15 24 H 0.11 4.61 6.73 -2.91 -0.02 4.59 15 25 H 0.40 15.29 6.32 -92.71 -0.59 14.71 15 26 H -0.01 -0.36 7.95 -2.39 -0.02 -0.38 15 27 H -0.01 -0.37 7.95 -2.39 -0.02 -0.39 15 28 H 0.27 14.56 8.31 -92.71 -0.77 13.79 15 Total: -1.00 -58.82 258.91 3.58 -55.23 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: 0.58 Total: 15.78 kcal Atomic # 6 Polarization: -29.90 SS G_CDS: 2.70 Total: -27.20 kcal Atomic # 7 Polarization: -84.17 SS G_CDS: -1.65 Total: -85.82 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.06 kcal Atomic # 17 Polarization: -1.98 SS G_CDS: -0.08 Total: -2.06 kcal Total: -58.82 3.58 -55.23 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032009112.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.793 kcal (2) G-P(sol) polarization free energy of solvation -58.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds