Wall clock time and date at job start Mon Mar 30 2020 02:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29497 * 1 3 3 Si 1.86799 * 120.00049 * 2 1 4 4 H 1.48502 * 109.47135 * 239.99982 * 3 2 1 5 5 H 1.48502 * 109.47282 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47157 * 119.99711 * 3 2 1 7 7 C 1.46568 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00151 * 169.53213 * 7 2 1 9 9 C 1.39702 * 120.00042 * 349.53665 * 7 2 1 10 10 C 1.41559 * 120.18800 * 322.22036 * 9 7 2 11 11 C 1.36337 * 119.73659 * 180.02562 * 10 9 7 12 12 O 1.35940 * 119.93311 * 179.97438 * 11 10 9 13 13 C 1.40378 * 120.12484 * 359.97438 * 11 10 9 14 14 O 1.35313 * 119.81057 * 180.02562 * 13 11 10 15 15 C 1.39650 * 120.38098 * 359.97438 * 13 11 10 16 16 C 1.36080 * 120.26372 * 0.02562 * 15 13 11 17 17 N 1.48020 * 120.06155 * 180.02562 * 16 15 13 18 18 O 1.31700 * 120.00544 * 353.99775 * 17 16 15 19 19 O 1.31705 * 119.99350 * 173.99074 * 17 16 15 20 20 H 0.97006 * 120.00282 * 0.02562 * 1 2 3 21 21 H 1.08008 * 120.12819 * 359.74558 * 10 9 7 22 22 H 0.96708 * 113.99958 * 90.00562 * 12 11 10 23 23 H 0.96696 * 113.99731 * 269.97978 * 14 13 11 24 24 H 1.08001 * 119.86800 * 180.02562 * 15 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2950 0.0000 0.0000 3 14 2.2290 1.6177 0.0000 4 1 3.0827 1.6964 -1.2125 5 1 1.2640 2.7465 -0.0006 6 1 3.0827 1.6964 1.2125 7 6 2.0278 -1.2693 0.0006 8 1 3.0943 -1.2772 -0.1694 9 6 1.3467 -2.4690 0.2208 10 6 0.2870 -2.5243 1.1578 11 6 -0.3711 -3.7001 1.3658 12 8 -1.3890 -3.7578 2.2650 13 6 0.0005 -4.8511 0.6533 14 8 -0.6573 -6.0146 0.8645 15 6 1.0445 -4.8020 -0.2729 16 6 1.7119 -3.6368 -0.4930 17 7 2.8174 -3.5897 -1.4762 18 8 3.2344 -4.6984 -2.0519 19 8 3.3839 -2.4390 -1.7754 20 1 -0.4851 0.8401 -0.0004 21 1 0.0039 -1.6396 1.7089 22 1 -2.2584 -3.5656 1.8878 23 1 -0.2737 -6.5620 1.5632 24 1 1.3232 -5.6925 -0.8168 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034562633.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:14 Heat of formation + Delta-G solvation = -56.673581 kcal Electronic energy + Delta-G solvation = -15181.853780 eV Core-core repulsion = 12257.639218 eV Total energy + Delta-G solvation = -2924.214563 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 225.052 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.34772 -37.39444 -36.30614 -35.66181 -33.98516 -32.71461 -30.02541 -29.41293 -26.06280 -24.19199 -21.91747 -20.92719 -18.65536 -17.91767 -17.23276 -16.65722 -16.00883 -15.61504 -14.88615 -14.49292 -14.27906 -13.79181 -13.17769 -13.04921 -12.42170 -11.81446 -11.64655 -11.43149 -11.07262 -10.97390 -10.60902 -9.93948 -9.63382 -9.50832 -9.30664 -9.17265 -8.31750 -7.93571 -7.69727 -5.18064 0.84089 2.03195 2.52472 2.68710 2.72772 2.78093 2.93872 3.40566 3.71148 4.51513 4.87769 5.08509 5.64678 6.04778 6.17288 6.24781 6.52954 6.64347 6.76946 7.05230 7.19858 7.35273 7.63929 7.81931 7.89693 8.08846 8.47779 8.58825 9.11837 Molecular weight = 225.05amu Principal moments of inertia in cm(-1) A = 0.023694 B = 0.012492 C = 0.008417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.445930 B = 2240.986162 C = 3325.904355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.714 5.714 2 C 0.058 3.942 3 Si 0.939 3.061 4 H -0.246 1.246 5 H -0.269 1.269 6 H -0.251 1.251 7 C -0.321 4.321 8 H 0.129 0.871 9 C 0.101 3.899 10 C -0.140 4.140 11 C 0.114 3.886 12 O -0.502 6.502 13 C -0.034 4.034 14 O -0.487 6.487 15 C -0.038 4.038 16 C -0.100 4.100 17 N 0.038 4.962 18 O -0.339 6.339 19 O -0.262 6.262 20 H 0.307 0.693 21 H 0.134 0.866 22 H 0.385 0.615 23 H 0.367 0.633 24 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.398 2.323 4.860 6.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.334 5.334 2 C -0.175 4.175 3 Si 0.759 3.241 4 H -0.169 1.169 5 H -0.193 1.193 6 H -0.174 1.174 7 C -0.348 4.348 8 H 0.146 0.854 9 C 0.095 3.905 10 C -0.160 4.160 11 C 0.069 3.931 12 O -0.311 6.311 13 C -0.082 4.082 14 O -0.294 6.294 15 C -0.057 4.057 16 C -0.200 4.200 17 N 0.464 4.536 18 O -0.487 6.487 19 O -0.428 6.428 20 H 0.120 0.880 21 H 0.152 0.848 22 H 0.240 0.760 23 H 0.220 0.780 24 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.747 2.341 4.927 6.618 hybrid contribution 0.302 0.480 -0.276 0.630 sum -3.445 2.821 4.652 6.439 Atomic orbital electron populations 1.69038 1.09302 1.33056 1.22002 1.27998 0.95003 1.03376 0.91078 0.85794 0.80242 0.76166 0.81881 1.16935 1.19325 1.17417 1.22080 0.97940 0.88635 1.26134 0.85359 1.17055 0.91736 0.91168 0.90518 1.21157 0.99167 0.96477 0.99196 1.18490 0.91391 0.92750 0.90471 1.84663 1.17598 1.93243 1.35624 1.18172 0.99982 0.86300 1.03788 1.84705 1.54993 1.30515 1.59200 1.20322 0.92072 0.96937 0.96409 1.19584 0.99477 0.98268 1.02701 1.49732 1.01713 1.01252 1.00880 1.96094 1.72333 1.19664 1.60564 1.96069 1.60611 1.13055 1.73072 0.87956 0.84832 0.76012 0.78036 0.85235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -14.60 11.63 55.99 0.65 -13.94 14 2 C 0.06 1.18 5.37 -15.18 -0.08 1.10 14 3 Si 0.94 15.38 29.66 -169.99 -5.04 10.34 14 4 H -0.25 -4.22 7.11 56.52 0.40 -3.81 14 5 H -0.27 -4.11 7.11 56.52 0.40 -3.71 14 6 H -0.25 -4.01 7.11 56.52 0.40 -3.61 14 7 C -0.32 -7.54 7.70 -35.68 -0.27 -7.81 14 8 H 0.13 3.09 6.06 -52.49 -0.32 2.77 14 9 C 0.10 2.43 5.47 -106.78 -0.58 1.85 14 10 C -0.14 -3.08 8.55 -39.00 -0.33 -3.41 14 11 C 0.11 2.37 6.68 -39.46 -0.26 2.11 14 12 O -0.50 -8.97 13.27 -34.03 -0.45 -9.42 14 13 C -0.03 -0.72 6.76 -38.25 -0.26 -0.98 14 14 O -0.49 -8.98 13.25 -32.11 -0.43 -9.41 14 15 C -0.04 -0.86 9.46 -39.83 -0.38 -1.24 14 16 C -0.10 -2.52 6.89 -79.42 -0.55 -3.07 14 17 N 0.04 1.05 4.98 34.22 0.17 1.22 14 18 O -0.34 -9.48 19.14 -31.57 -0.60 -10.09 14 19 O -0.26 -7.27 16.31 -31.57 -0.51 -7.79 14 20 H 0.31 5.42 8.27 -40.82 -0.34 5.09 14 21 H 0.13 2.85 6.98 -52.48 -0.37 2.48 14 22 H 0.38 5.25 9.06 45.56 0.41 5.67 14 23 H 0.37 5.12 9.06 45.56 0.41 5.53 14 24 H 0.13 2.88 7.55 -52.49 -0.40 2.48 14 LS Contribution 233.40 15.07 3.52 3.52 Total: -1.00 -29.33 233.40 -4.80 -34.14 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: 0.61 Total: 12.88 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: -2.72 Total: -11.46 kcal Atomic # 7 Polarization: -13.54 SS G_CDS: 0.82 Total: -12.72 kcal Atomic # 8 Polarization: -34.70 SS G_CDS: -2.00 Total: -36.70 kcal Atomic # 14 Polarization: 15.38 SS G_CDS: -5.04 Total: 10.34 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -29.33 -4.80 -34.14 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034562633.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.534 kcal (2) G-P(sol) polarization free energy of solvation -29.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds