Wall clock time and date at job start Mon Mar 30 2020 02:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29408 * 1 3 3 Si 1.86795 * 120.00388 * 2 1 4 4 H 1.48500 * 109.46979 * 269.99881 * 3 2 1 5 5 H 1.48499 * 109.47013 * 29.99317 * 3 2 1 6 6 H 1.48501 * 109.47401 * 149.99941 * 3 2 1 7 7 C 1.46629 * 119.99489 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99588 * 180.02562 * 7 2 1 9 9 S 1.71198 * 120.00188 * 0.02562 * 7 2 1 10 10 C 1.76201 * 99.99873 * 185.72837 * 9 7 2 11 11 C 1.39131 * 120.08961 * 7.10712 * 10 9 7 12 12 C 1.38011 * 119.90420 * 180.02562 * 11 10 9 13 13 C 1.38366 * 120.09514 * 0.02562 * 12 11 10 14 14 C 1.38323 * 120.17998 * 359.97438 * 13 12 11 15 15 C 1.38049 * 120.09520 * 0.02562 * 14 13 12 16 16 N 1.48014 * 120.05103 * 180.02562 * 15 14 13 17 17 O 1.31701 * 119.99858 * 359.97438 * 16 15 14 18 18 O 1.31703 * 120.00561 * 179.97438 * 16 15 14 19 19 H 0.97003 * 120.00030 * 0.02562 * 1 2 3 20 20 H 1.07996 * 120.04627 * 359.97438 * 11 10 9 21 21 H 1.08005 * 119.95648 * 179.72025 * 12 11 10 22 22 H 1.08000 * 119.91247 * 179.97438 * 13 12 11 23 23 H 1.08004 * 119.95010 * 179.97438 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2941 0.0000 0.0000 3 14 2.2282 1.6176 0.0000 4 1 2.4757 2.0462 -1.4001 5 1 1.4256 2.6526 0.6999 6 1 3.5257 1.4400 0.7000 7 6 2.0271 -1.2699 0.0006 8 1 3.1072 -1.2699 0.0010 9 16 1.1710 -2.7525 0.0006 10 6 2.5132 -3.8808 0.1745 11 6 3.7986 -3.4044 0.4124 12 6 4.8471 -4.2915 0.5475 13 6 4.6216 -5.6529 0.4462 14 6 3.3452 -6.1306 0.2098 15 6 2.2907 -5.2500 0.0734 16 7 0.9252 -5.7623 -0.1790 17 8 0.7155 -7.0590 -0.2741 18 8 -0.0802 -4.9215 -0.3085 19 1 -0.4850 0.8401 -0.0004 20 1 3.9757 -2.3419 0.4904 21 1 5.8460 -3.9224 0.7277 22 1 5.4444 -6.3444 0.5520 23 1 3.1734 -7.1940 0.1310 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035286748.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:32 Heat of formation + Delta-G solvation = 27.677036 kcal Electronic energy + Delta-G solvation = -12687.187705 eV Core-core repulsion = 10209.383731 eV Total energy + Delta-G solvation = -2477.803974 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 225.025 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.47646 -38.59447 -35.31143 -34.88323 -32.40189 -32.19718 -28.02684 -27.19822 -23.86023 -23.04672 -20.58135 -19.20685 -18.52985 -17.71875 -17.30559 -16.53947 -16.00194 -15.85032 -15.19699 -14.83667 -13.95342 -13.78513 -13.27028 -13.10987 -12.89911 -12.20685 -12.13292 -11.82002 -11.74160 -11.70435 -11.43828 -10.83488 -10.36432 -10.26723 -9.07649 -8.93370 -6.30760 -1.57311 0.19024 0.51917 0.75519 1.04469 1.35892 1.38793 1.51204 2.04754 2.48193 2.61928 2.85213 3.68776 4.06363 4.24575 4.32242 4.40488 4.79567 4.94763 5.08794 5.20296 5.41141 5.41629 5.76346 5.92059 6.30900 6.32877 8.05783 Molecular weight = 225.02amu Principal moments of inertia in cm(-1) A = 0.034507 B = 0.009725 C = 0.007621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.243053 B = 2878.354976 C = 3673.194299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.050 3.950 3 Si 1.005 2.995 4 H -0.260 1.260 5 H -0.265 1.265 6 H -0.247 1.247 7 C -0.675 4.675 8 H 0.122 0.878 9 S 0.326 5.674 10 C -0.137 4.137 11 C -0.147 4.147 12 C -0.040 4.040 13 C -0.135 4.135 14 C -0.054 4.054 15 C -0.038 4.038 16 N 0.010 4.990 17 O -0.353 6.353 18 O -0.302 6.302 19 H 0.305 0.695 20 H 0.152 0.848 21 H 0.179 0.821 22 H 0.182 0.818 23 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.263 0.869 1.887 12.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.171 4.171 3 Si 0.823 3.177 4 H -0.185 1.185 5 H -0.189 1.189 6 H -0.170 1.170 7 C -0.821 4.821 8 H 0.140 0.860 9 S 0.591 5.409 10 C -0.260 4.260 11 C -0.171 4.171 12 C -0.066 4.066 13 C -0.159 4.159 14 C -0.075 4.075 15 C -0.147 4.147 16 N 0.412 4.588 17 O -0.494 6.494 18 O -0.452 6.452 19 H 0.117 0.883 20 H 0.170 0.830 21 H 0.197 0.803 22 H 0.199 0.801 23 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 10.735 1.002 1.786 10.929 hybrid contribution 0.535 0.772 -0.081 0.943 sum 11.271 1.775 1.705 11.536 Atomic orbital electron populations 1.68978 1.10028 1.33025 1.33230 1.27889 0.95263 1.04007 0.89962 0.84857 0.79132 0.73861 0.79875 1.18451 1.18944 1.17025 1.26053 0.99846 0.95473 1.60771 0.86034 1.84147 1.03753 0.92839 1.60134 1.22848 1.03305 0.95552 1.04313 1.21540 0.89937 1.02166 1.03478 1.21843 0.99770 0.92734 0.92231 1.21452 0.95218 0.96544 1.02642 1.21058 0.91359 0.99719 0.95384 1.19961 0.80192 0.93142 1.21396 1.50191 1.04199 1.01721 1.02662 1.96046 1.93218 0.93095 1.67063 1.96053 1.35249 1.50658 1.63279 0.88262 0.83047 0.80329 0.80051 0.83519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -40.14 13.25 23.23 0.31 -39.83 14 2 C 0.05 2.26 5.68 87.24 0.50 2.76 14 3 Si 1.00 33.64 29.64 68.60 2.03 35.67 14 4 H -0.26 -8.49 7.11 99.48 0.71 -7.78 14 5 H -0.27 -8.50 7.11 99.48 0.71 -7.80 14 6 H -0.25 -7.77 7.11 99.48 0.71 -7.06 14 7 C -0.67 -31.71 9.15 70.01 0.64 -31.07 14 8 H 0.12 5.15 4.97 -2.91 -0.01 5.14 14 9 S 0.33 16.29 18.23 -56.49 -1.03 15.26 14 10 C -0.14 -5.94 6.09 22.69 0.14 -5.80 14 11 C -0.15 -5.02 9.19 22.43 0.21 -4.81 14 12 C -0.04 -0.97 10.04 22.25 0.22 -0.75 14 13 C -0.14 -3.20 10.05 22.32 0.22 -2.98 14 14 C -0.05 -1.80 9.57 22.25 0.21 -1.59 14 15 C -0.04 -1.65 6.91 36.54 0.25 -1.40 14 16 N 0.01 0.53 4.98 -46.08 -0.23 0.30 14 17 O -0.35 -18.67 19.15 3.51 0.07 -18.61 14 18 O -0.30 -17.08 16.38 3.51 0.06 -17.03 14 19 H 0.31 13.18 8.27 -92.71 -0.77 12.41 14 20 H 0.15 5.04 5.07 -2.91 -0.01 5.03 14 21 H 0.18 2.54 8.06 -2.91 -0.02 2.51 14 22 H 0.18 2.52 8.06 -2.91 -0.02 2.50 14 23 H 0.15 4.60 7.58 -2.91 -0.02 4.58 14 Total: -1.00 -65.18 231.65 4.86 -60.32 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: 1.26 Total: 9.54 kcal Atomic # 6 Polarization: -48.03 SS G_CDS: 2.39 Total: -45.63 kcal Atomic # 7 Polarization: -39.61 SS G_CDS: 0.08 Total: -39.53 kcal Atomic # 8 Polarization: -35.76 SS G_CDS: 0.12 Total: -35.63 kcal Atomic # 14 Polarization: 33.64 SS G_CDS: 2.03 Total: 35.67 kcal Atomic # 16 Polarization: 16.29 SS G_CDS: -1.03 Total: 15.26 kcal Total: -65.18 4.86 -60.32 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035286748.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.999 kcal (2) G-P(sol) polarization free energy of solvation -65.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds