Wall clock time and date at job start Mon Mar 30 2020 03:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38292 * 119.92530 * 2 1 4 4 C 1.38112 * 120.09643 * 179.97438 * 3 2 1 5 5 C 1.38882 * 119.93481 * 359.97438 * 4 3 2 6 6 N 1.39752 * 120.07375 * 179.97438 * 5 4 3 7 7 C 1.46500 * 120.00366 * 0.02562 * 6 5 4 8 8 C 1.50698 * 109.47038 * 179.97438 * 7 6 5 9 9 H 1.08002 * 120.00275 * 0.02562 * 8 7 6 10 10 C 1.37882 * 119.99647 * 179.97438 * 8 7 6 11 11 N 1.31513 * 120.00014 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 119.99875 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47179 * 90.00367 * 12 10 8 14 14 H 1.48497 * 109.47004 * 210.00360 * 12 10 8 15 15 H 1.48502 * 109.47088 * 329.99923 * 12 10 8 16 16 C 1.38992 * 119.84863 * 0.02562 * 5 4 3 17 17 Cl 1.73599 * 120.04748 * 179.97438 * 16 5 4 18 18 C 1.38212 * 119.89892 * 0.28146 * 16 5 4 19 19 H 1.08999 * 109.46994 * 90.00066 * 1 2 3 20 20 H 1.08991 * 109.47359 * 210.00139 * 1 2 3 21 21 H 1.08998 * 109.46923 * 330.00470 * 1 2 3 22 22 H 1.07998 * 119.94925 * 359.97438 * 3 2 1 23 23 H 1.07998 * 120.03508 * 179.97438 * 4 3 2 24 24 H 0.97004 * 119.99989 * 180.02562 * 6 5 4 25 25 H 1.09001 * 109.47301 * 300.00257 * 7 6 5 26 26 H 1.09005 * 109.46605 * 60.00051 * 7 6 5 27 27 H 0.97001 * 119.99679 * 180.02562 * 11 10 8 28 28 H 1.07997 * 119.96337 * 179.72376 * 18 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5781 1.2027 0.0005 5 6 4.2747 0.0012 0.0016 6 7 5.6722 0.0020 0.0016 7 6 6.4041 1.2711 0.0010 8 6 7.8858 0.9964 0.0018 9 1 8.2464 -0.0216 0.0022 10 6 8.7812 2.0449 0.0009 11 7 8.3422 3.2846 -0.0001 12 14 10.6180 1.7045 0.0011 13 1 11.1047 1.6133 -1.3989 14 1 11.3256 2.8071 0.7003 15 1 10.8838 0.4227 0.7022 16 6 3.5788 -1.2020 0.0016 17 17 4.4443 -2.7068 0.0023 18 6 2.1967 -1.1984 -0.0054 19 1 -0.3633 0.0000 -1.0277 20 1 -0.3633 -0.8899 0.5138 21 1 -0.3633 0.8900 0.5138 22 1 1.6549 2.1326 -0.0004 23 1 4.1158 2.1392 0.0001 24 1 6.1577 -0.8378 0.0020 25 1 6.1405 1.8422 -0.8892 26 1 6.1404 1.8429 0.8908 27 1 8.9722 4.0222 -0.0011 28 1 1.6549 -2.1327 -0.0099 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036723423.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:07 Heat of formation + Delta-G solvation = 0.125480 kcal Electronic energy + Delta-G solvation = -12721.095575 eV Core-core repulsion = 10375.886263 eV Total energy + Delta-G solvation = -2345.209311 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.10890 -36.02487 -35.40938 -32.85802 -30.80862 -30.28687 -27.46926 -24.97483 -23.20595 -21.68496 -20.37406 -17.46873 -16.04435 -15.58037 -15.14036 -14.53145 -13.87526 -13.59603 -13.35099 -13.08757 -13.04674 -12.20065 -12.17128 -11.91254 -11.47314 -11.05887 -10.95051 -10.80773 -10.80461 -10.45386 -10.16173 -9.43751 -9.39241 -8.56113 -8.39398 -6.60765 -6.24257 -4.29429 1.68138 1.98257 2.64727 3.21626 3.27952 3.31186 4.16283 4.20835 4.47175 5.13247 5.16477 5.25572 5.49501 5.59344 5.78422 5.86321 6.02429 6.15209 6.32567 6.61123 6.69094 6.96593 7.03494 7.28190 7.35544 7.58886 7.88869 8.16573 8.57252 8.83502 9.36989 10.86328 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.037679 B = 0.006746 C = 0.005745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.944927 B = 4149.821317 C = 4872.318301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.168 4.168 3 C -0.062 4.062 4 C -0.191 4.191 5 C 0.241 3.759 6 N -0.720 5.720 7 C 0.249 3.751 8 C -0.540 4.540 9 H 0.062 0.938 10 C 0.065 3.935 11 N -0.889 5.889 12 Si 0.904 3.096 13 H -0.278 1.278 14 H -0.284 1.284 15 H -0.272 1.272 16 C -0.131 4.131 17 Cl -0.088 7.088 18 C -0.060 4.060 19 H 0.059 0.941 20 H 0.057 0.943 21 H 0.059 0.941 22 H 0.119 0.881 23 H 0.133 0.867 24 H 0.396 0.604 25 H 0.023 0.977 26 H 0.023 0.977 27 H 0.266 0.734 28 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.561 -6.095 -0.010 13.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.171 4.171 3 C -0.081 4.081 4 C -0.214 4.214 5 C 0.129 3.871 6 N -0.342 5.342 7 C 0.128 3.872 8 C -0.578 4.578 9 H 0.081 0.919 10 C -0.139 4.139 11 N -0.526 5.526 12 Si 0.731 3.269 13 H -0.204 1.204 14 H -0.209 1.209 15 H -0.197 1.197 16 C -0.163 4.163 17 Cl -0.060 7.060 18 C -0.079 4.079 19 H 0.077 0.923 20 H 0.076 0.924 21 H 0.078 0.922 22 H 0.137 0.863 23 H 0.151 0.849 24 H 0.231 0.769 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.076 0.924 28 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -11.234 -5.817 -0.004 12.651 hybrid contribution 1.370 -0.503 -0.018 1.459 sum -9.864 -6.321 -0.022 11.715 Atomic orbital electron populations 1.20553 0.91539 1.01858 1.01357 1.19375 0.95506 0.92423 1.09756 1.20798 0.93408 0.97175 0.96733 1.20717 0.94003 0.96699 1.09991 1.17811 0.85585 0.91874 0.91839 1.45711 1.01127 1.11271 1.76098 1.19184 0.90855 0.80364 0.96808 1.21181 0.90335 0.93401 1.52881 0.91939 1.24918 0.99631 0.94770 0.94562 1.69939 1.35147 0.98329 1.49229 0.86399 0.84089 0.78096 0.78307 1.20395 1.20932 1.19709 1.20261 0.92195 0.84917 1.18922 1.98299 1.77427 1.32624 1.97656 1.20492 0.91071 0.97922 0.98418 0.92262 0.92403 0.92198 0.86281 0.84870 0.76916 0.95879 0.95874 0.92416 0.86090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.03 10.01 36.01 0.36 -0.67 15 2 C -0.17 -2.40 5.88 -104.59 -0.62 -3.02 15 3 C -0.06 -0.96 9.69 -39.61 -0.38 -1.34 15 4 C -0.19 -3.52 9.31 -39.39 -0.37 -3.88 15 5 C 0.24 4.74 6.65 -83.73 -0.56 4.18 15 6 N -0.72 -15.74 5.68 -59.77 -0.34 -16.08 15 7 C 0.25 6.30 4.67 -5.19 -0.02 6.28 15 8 C -0.54 -14.68 9.28 -34.44 -0.32 -15.00 15 9 H 0.06 1.66 7.60 -52.49 -0.40 1.26 15 10 C 0.06 1.77 5.46 -17.82 -0.10 1.67 15 11 N -0.89 -25.34 13.29 55.43 0.74 -24.60 15 12 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 15 13 H -0.28 -6.36 7.11 56.52 0.40 -5.96 15 14 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 15 H -0.27 -6.21 7.11 56.52 0.40 -5.81 15 16 C -0.13 -2.29 6.34 -39.31 -0.25 -2.54 15 17 Cl -0.09 -1.44 27.60 -51.86 -1.43 -2.88 15 18 C -0.06 -0.91 9.48 -39.58 -0.38 -1.28 15 19 H 0.06 0.58 8.14 -51.93 -0.42 0.16 15 20 H 0.06 0.55 8.08 -51.93 -0.42 0.13 15 21 H 0.06 0.58 8.08 -51.93 -0.42 0.16 15 22 H 0.12 1.52 8.06 -52.49 -0.42 1.10 15 23 H 0.13 2.57 6.74 -52.49 -0.35 2.22 15 24 H 0.40 8.42 7.00 -40.82 -0.29 8.13 15 25 H 0.02 0.62 7.95 -51.93 -0.41 0.21 15 26 H 0.02 0.63 7.95 -51.93 -0.41 0.21 15 27 H 0.27 7.14 8.31 -40.82 -0.34 6.80 15 28 H 0.12 1.57 8.06 -52.49 -0.42 1.14 15 LS Contribution 260.15 15.07 3.92 3.92 Total: -1.00 -27.81 260.15 -7.87 -35.68 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -3.11 Total: 3.67 kcal Atomic # 6 Polarization: -12.99 SS G_CDS: -2.63 Total: -15.61 kcal Atomic # 7 Polarization: -41.08 SS G_CDS: 0.40 Total: -40.68 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 17 Polarization: -1.44 SS G_CDS: -1.43 Total: -2.88 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -27.81 -7.87 -35.68 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036723423.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.805 kcal (2) G-P(sol) polarization free energy of solvation -27.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds