Wall clock time and date at job start Mon Mar 30 2020 03:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38292 * 119.92530 * 2 1 4 4 C 1.38112 * 120.09643 * 179.97438 * 3 2 1 5 5 C 1.38882 * 119.93481 * 359.97438 * 4 3 2 6 6 N 1.39752 * 120.07375 * 179.97438 * 5 4 3 7 7 C 1.46500 * 120.00366 * 0.02562 * 6 5 4 8 8 C 1.50698 * 109.47038 * 179.97438 * 7 6 5 9 9 H 1.08002 * 120.00275 * 0.02562 * 8 7 6 10 10 C 1.37882 * 119.99647 * 179.97438 * 8 7 6 11 11 N 1.31513 * 120.00014 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 119.99875 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47179 * 90.00367 * 12 10 8 14 14 H 1.48497 * 109.47004 * 210.00360 * 12 10 8 15 15 H 1.48502 * 109.47088 * 329.99923 * 12 10 8 16 16 C 1.38992 * 119.84863 * 0.02562 * 5 4 3 17 17 Cl 1.73599 * 120.04748 * 179.97438 * 16 5 4 18 18 C 1.38212 * 119.89892 * 0.28146 * 16 5 4 19 19 H 1.08999 * 109.46994 * 90.00066 * 1 2 3 20 20 H 1.08991 * 109.47359 * 210.00139 * 1 2 3 21 21 H 1.08998 * 109.46923 * 330.00470 * 1 2 3 22 22 H 1.07998 * 119.94925 * 359.97438 * 3 2 1 23 23 H 1.07998 * 120.03508 * 179.97438 * 4 3 2 24 24 H 0.97004 * 119.99989 * 180.02562 * 6 5 4 25 25 H 1.09001 * 109.47301 * 300.00257 * 7 6 5 26 26 H 1.09005 * 109.46605 * 60.00051 * 7 6 5 27 27 H 0.97001 * 119.99679 * 180.02562 * 11 10 8 28 28 H 1.07997 * 119.96337 * 179.72376 * 18 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5781 1.2027 0.0005 5 6 4.2747 0.0012 0.0016 6 7 5.6722 0.0020 0.0016 7 6 6.4041 1.2711 0.0010 8 6 7.8858 0.9964 0.0018 9 1 8.2464 -0.0216 0.0022 10 6 8.7812 2.0449 0.0009 11 7 8.3422 3.2846 -0.0001 12 14 10.6180 1.7045 0.0011 13 1 11.1047 1.6133 -1.3989 14 1 11.3256 2.8071 0.7003 15 1 10.8838 0.4227 0.7022 16 6 3.5788 -1.2020 0.0016 17 17 4.4443 -2.7068 0.0023 18 6 2.1967 -1.1984 -0.0054 19 1 -0.3633 0.0000 -1.0277 20 1 -0.3633 -0.8899 0.5138 21 1 -0.3633 0.8900 0.5138 22 1 1.6549 2.1326 -0.0004 23 1 4.1158 2.1392 0.0001 24 1 6.1577 -0.8378 0.0020 25 1 6.1405 1.8422 -0.8892 26 1 6.1404 1.8429 0.8908 27 1 8.9722 4.0222 -0.0011 28 1 1.6549 -2.1327 -0.0099 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036723423.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:07 Heat of formation + Delta-G solvation = -15.602601 kcal Electronic energy + Delta-G solvation = -12721.777595 eV Core-core repulsion = 10375.886263 eV Total energy + Delta-G solvation = -2345.891332 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.47076 -37.34231 -37.02192 -34.79521 -32.22556 -31.60683 -29.19415 -26.42489 -24.89142 -23.18262 -21.77508 -19.25401 -17.70958 -17.23370 -16.60689 -16.17381 -15.35053 -14.96470 -14.78485 -14.61484 -14.38934 -13.99855 -13.55176 -13.02887 -12.84178 -12.80875 -12.64195 -12.26230 -12.21213 -12.00643 -11.67403 -11.45938 -10.99585 -10.51098 -9.70819 -8.33526 -8.14763 -6.47207 0.35522 0.64880 1.30072 1.39195 1.40272 1.51596 2.31761 2.80173 2.83140 3.01739 3.90636 4.11045 4.39478 4.45116 4.55648 4.81057 4.98788 5.01070 5.07277 5.19196 5.25687 5.34701 5.41629 5.50612 5.73822 5.83333 6.02608 6.37425 6.66889 7.01793 7.25285 8.78103 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.037679 B = 0.006746 C = 0.005745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.944927 B = 4149.821317 C = 4872.318301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.151 4.151 3 C -0.062 4.062 4 C -0.210 4.210 5 C 0.207 3.793 6 N -0.732 5.732 7 C 0.272 3.728 8 C -0.561 4.561 9 H 0.066 0.934 10 C 0.013 3.987 11 N -0.923 5.923 12 Si 0.976 3.024 13 H -0.271 1.271 14 H -0.278 1.278 15 H -0.265 1.265 16 C -0.134 4.134 17 Cl -0.081 7.081 18 C -0.061 4.061 19 H 0.074 0.926 20 H 0.074 0.926 21 H 0.074 0.926 22 H 0.147 0.853 23 H 0.111 0.889 24 H 0.396 0.604 25 H -0.004 1.004 26 H -0.004 1.004 27 H 0.270 0.730 28 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.943 -7.195 -0.014 14.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.153 4.153 3 C -0.080 4.080 4 C -0.233 4.233 5 C 0.099 3.901 6 N -0.358 5.358 7 C 0.149 3.851 8 C -0.599 4.599 9 H 0.084 0.916 10 C -0.188 4.188 11 N -0.561 5.561 12 Si 0.799 3.201 13 H -0.196 1.196 14 H -0.203 1.203 15 H -0.189 1.189 16 C -0.166 4.166 17 Cl -0.053 7.053 18 C -0.080 4.080 19 H 0.093 0.907 20 H 0.093 0.907 21 H 0.093 0.907 22 H 0.165 0.835 23 H 0.129 0.871 24 H 0.231 0.769 25 H 0.014 0.986 26 H 0.014 0.986 27 H 0.079 0.921 28 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -12.677 -6.938 -0.009 14.451 hybrid contribution 1.589 -0.185 -0.018 1.600 sum -11.088 -7.123 -0.027 13.179 Atomic orbital electron populations 1.20658 0.88173 1.03552 1.02861 1.19913 0.97798 0.91427 1.06195 1.21131 0.92076 0.99201 0.95632 1.20764 0.95577 0.95642 1.11316 1.18073 0.84659 0.93349 0.94055 1.45325 1.02093 1.09602 1.78780 1.18618 0.90703 0.81534 0.94199 1.21544 0.91439 0.93769 1.53107 0.91629 1.25871 1.04624 0.94436 0.93829 1.70058 1.36933 0.99299 1.49831 0.85287 0.77922 0.78222 0.78625 1.19591 1.20272 1.18917 1.20468 0.93176 0.84540 1.18401 1.98297 1.77569 1.31765 1.97622 1.20907 0.90093 0.99671 0.97335 0.90688 0.90662 0.90708 0.83497 0.87112 0.76915 0.98601 0.98601 0.92085 0.83176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.61 10.01 71.24 0.71 -0.89 15 2 C -0.15 -3.85 5.88 -19.84 -0.12 -3.97 15 3 C -0.06 -1.81 9.69 22.25 0.22 -1.59 15 4 C -0.21 -7.95 9.31 22.39 0.21 -7.74 15 5 C 0.21 8.33 6.65 38.21 0.25 8.59 15 6 N -0.73 -33.48 5.68 -343.01 -1.95 -35.43 15 7 C 0.27 14.60 4.67 85.63 0.40 15.00 15 8 C -0.56 -31.46 9.28 25.60 0.24 -31.23 15 9 H 0.07 3.54 7.60 -2.91 -0.02 3.52 15 10 C 0.01 0.71 5.46 84.66 0.46 1.17 15 11 N -0.92 -54.04 13.29 21.45 0.28 -53.75 15 12 Si 0.98 43.16 29.54 68.60 2.03 45.19 15 13 H -0.27 -11.59 7.11 99.48 0.71 -10.88 15 14 H -0.28 -11.91 7.11 99.48 0.71 -11.20 15 15 H -0.26 -11.31 7.11 99.48 0.71 -10.60 15 16 C -0.13 -4.60 6.34 22.44 0.14 -4.45 15 17 Cl -0.08 -2.58 27.60 -2.72 -0.08 -2.65 15 18 C -0.06 -1.69 9.48 22.27 0.21 -1.48 15 19 H 0.07 1.11 8.14 -2.39 -0.02 1.09 15 20 H 0.07 1.06 8.08 -2.39 -0.02 1.04 15 21 H 0.07 1.08 8.08 -2.39 -0.02 1.07 15 22 H 0.15 3.40 8.06 -2.91 -0.02 3.38 15 23 H 0.11 4.61 6.74 -2.91 -0.02 4.59 15 24 H 0.40 17.46 7.00 -92.71 -0.65 16.81 15 25 H 0.00 -0.22 7.95 -2.39 -0.02 -0.24 15 26 H 0.00 -0.22 7.95 -2.38 -0.02 -0.24 15 27 H 0.27 14.76 8.31 -92.71 -0.77 13.99 15 28 H 0.15 3.28 8.06 -2.91 -0.02 3.26 15 Total: -1.00 -61.20 260.15 3.53 -57.67 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: 0.52 Total: 15.58 kcal Atomic # 6 Polarization: -29.33 SS G_CDS: 2.73 Total: -26.60 kcal Atomic # 7 Polarization: -87.51 SS G_CDS: -1.66 Total: -89.18 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Atomic # 17 Polarization: -2.58 SS G_CDS: -0.08 Total: -2.65 kcal Total: -61.20 3.53 -57.67 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036723423.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.063 kcal (2) G-P(sol) polarization free energy of solvation -61.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds