Wall clock time and date at job start Mon Mar 30 2020 02:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31576 * 1 3 3 Si 1.86799 * 119.99784 * 2 1 4 4 H 1.48500 * 109.46907 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47198 * 299.99993 * 3 2 1 6 6 H 1.48496 * 109.47249 * 60.00501 * 3 2 1 7 7 C 1.38779 * 119.99887 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99850 * 179.97438 * 7 2 1 9 9 S 1.76202 * 120.00088 * 359.97438 * 7 2 1 10 10 C 1.76201 * 99.99939 * 180.02562 * 9 7 2 11 11 C 1.39205 * 119.64837 * 180.02562 * 10 9 7 12 12 C 1.39534 * 118.92231 * 179.72218 * 11 10 9 13 13 C 1.48032 * 120.88562 * 179.97438 * 12 11 10 14 14 O 1.21434 * 120.00476 * 0.02562 * 13 12 11 15 15 O 1.34683 * 120.00051 * 179.97438 * 13 12 11 16 16 C 1.40108 * 118.23086 * 359.97438 * 12 11 10 17 17 C 1.38059 * 119.17538 * 359.97438 * 16 12 11 18 18 N 1.31833 * 121.01418 * 0.02562 * 17 16 12 19 19 H 0.96998 * 119.99929 * 359.97438 * 1 2 3 20 20 H 1.08000 * 120.53964 * 359.73908 * 11 10 9 21 21 H 0.96702 * 116.99836 * 180.02562 * 15 13 12 22 22 H 1.07992 * 120.41356 * 179.97438 * 16 12 11 23 23 H 1.08003 * 119.48788 * 180.02562 * 17 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 3.7097 1.3464 -0.0006 5 1 1.8909 2.3964 -1.2124 6 1 1.8910 2.3964 1.2125 7 6 2.0096 -1.2019 -0.0005 8 1 3.0897 -1.2019 -0.0010 9 16 1.1286 -2.7278 -0.0005 10 6 2.4784 -3.8604 -0.0005 11 6 2.2283 -5.2298 -0.0011 12 6 3.3084 -6.1131 -0.0070 13 6 3.0925 -7.5776 -0.0072 14 8 1.9636 -8.0249 -0.0027 15 8 4.1482 -8.4139 -0.0135 16 6 4.6029 -5.5770 -0.0127 17 6 4.7635 -4.2058 -0.0128 18 7 3.7203 -3.3997 -0.0071 19 1 -0.4850 0.8400 0.0004 20 1 1.2146 -5.6025 0.0027 21 1 3.9572 -9.3619 -0.0138 22 1 5.4643 -6.2283 -0.0170 23 1 5.7590 -3.7871 -0.0176 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041044167.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:15 Heat of formation + Delta-G solvation = -64.304964 kcal Electronic energy + Delta-G solvation = -12342.671740 eV Core-core repulsion = 9860.879127 eV Total energy + Delta-G solvation = -2481.792613 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 225.025 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.31822 -38.84175 -36.08654 -32.74417 -32.24112 -30.66319 -25.86705 -25.05106 -23.08488 -21.38094 -18.65015 -17.78856 -17.22235 -15.76297 -15.59251 -15.32585 -14.99115 -14.69407 -13.84445 -13.40389 -13.17107 -12.93440 -11.75161 -11.61206 -11.20213 -11.17026 -10.91682 -10.71137 -10.12221 -9.81284 -9.41043 -8.92642 -8.92264 -8.78079 -6.82696 -6.50736 -4.20708 0.94896 1.57489 2.78789 2.82702 3.12855 3.14183 3.21377 3.31152 3.97246 4.26149 4.89751 4.94759 5.03122 5.25735 5.47553 5.63237 5.71471 6.09539 6.26662 6.39584 6.47558 7.00288 7.54482 7.89231 8.37732 8.51170 9.01682 10.57097 Molecular weight = 225.02amu Principal moments of inertia in cm(-1) A = 0.058528 B = 0.006724 C = 0.006044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.290909 B = 4163.025091 C = 4631.471621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.071 3.929 3 Si 0.931 3.069 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.534 4.534 8 H 0.110 0.890 9 S 0.113 5.887 10 C 0.100 3.900 11 C -0.119 4.119 12 C -0.069 4.069 13 C 0.532 3.468 14 O -0.512 6.512 15 O -0.511 6.511 16 C -0.181 4.181 17 C 0.113 3.887 18 N -0.465 5.465 19 H 0.274 0.726 20 H 0.142 0.858 21 H 0.411 0.589 22 H 0.135 0.865 23 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.552 -10.190 -0.023 12.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.138 4.138 3 Si 0.756 3.244 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.682 4.682 8 H 0.128 0.872 9 S 0.367 5.633 10 C -0.148 4.148 11 C -0.149 4.149 12 C -0.079 4.079 13 C 0.376 3.624 14 O -0.400 6.400 15 O -0.322 6.322 16 C -0.210 4.210 17 C -0.049 4.049 18 N -0.181 5.181 19 H 0.084 0.916 20 H 0.160 0.840 21 H 0.269 0.731 22 H 0.153 0.847 23 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 5.840 -8.817 -0.022 10.576 hybrid contribution 1.582 -0.440 0.000 1.642 sum 7.422 -9.257 -0.022 11.865 Atomic orbital electron populations 1.69965 1.06216 1.28388 1.46071 1.25196 0.95153 0.99953 0.93488 0.85900 0.80047 0.80499 0.77931 1.18938 1.20404 1.20399 1.23480 0.97579 0.89666 1.57448 0.87179 1.83647 1.01855 0.97387 1.80437 1.24272 0.98030 0.95500 0.97024 1.21760 0.99236 0.92196 1.01687 1.19064 0.95180 0.88348 1.05302 1.21018 0.81846 0.87779 0.71767 1.90871 1.24718 1.78454 1.45985 1.84577 1.39049 1.22680 1.85898 1.21963 0.96114 0.96874 1.06050 1.22732 0.98041 0.89674 0.94489 1.68121 0.98200 1.38701 1.13054 0.91650 0.84010 0.73118 0.84690 0.83054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.39 13.22 55.49 0.73 -23.66 14 2 C 0.07 1.93 5.49 -17.46 -0.10 1.83 14 3 Si 0.93 20.81 29.55 -169.99 -5.02 15.79 14 4 H -0.27 -5.87 7.11 56.52 0.40 -5.47 14 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 14 6 H -0.28 -6.10 7.11 56.52 0.40 -5.70 14 7 C -0.53 -14.62 9.25 30.93 0.29 -14.33 14 8 H 0.11 3.03 6.53 -52.49 -0.34 2.69 14 9 S 0.11 2.84 21.64 -107.50 -2.33 0.51 14 10 C 0.10 2.21 6.96 -16.92 -0.12 2.09 14 11 C -0.12 -2.31 9.41 -38.74 -0.36 -2.67 14 12 C -0.07 -1.16 5.90 -104.70 -0.62 -1.77 14 13 C 0.53 7.96 8.30 34.75 0.29 8.25 14 14 O -0.51 -8.89 17.23 -19.21 -0.33 -9.22 14 15 O -0.51 -5.50 12.78 -40.45 -0.52 -6.01 14 16 C -0.18 -2.77 9.70 -38.95 -0.38 -3.15 14 17 C 0.11 1.93 11.17 -17.62 -0.20 1.73 14 18 N -0.47 -10.08 8.41 -12.12 -0.10 -10.19 14 19 H 0.27 7.10 8.31 -40.82 -0.34 6.76 14 20 H 0.14 2.64 7.74 -52.49 -0.41 2.24 14 21 H 0.41 2.34 9.11 45.56 0.42 2.76 14 22 H 0.14 1.64 7.71 -52.49 -0.40 1.24 14 23 H 0.15 2.04 8.06 -52.48 -0.42 1.62 14 LS Contribution 237.78 15.07 3.58 3.58 Total: -1.00 -31.31 237.78 -5.47 -36.79 By element: Atomic # 1 Polarization: 0.73 SS G_CDS: -0.30 Total: 0.44 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: -1.20 Total: -8.03 kcal Atomic # 7 Polarization: -34.48 SS G_CDS: 0.63 Total: -33.85 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -0.85 Total: -15.23 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: 2.84 SS G_CDS: -2.33 Total: 0.51 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -31.31 -5.47 -36.79 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041044167.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.517 kcal (2) G-P(sol) polarization free energy of solvation -31.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds