Wall clock time and date at job start Mon Mar 30 2020 02:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31425 * 1 3 3 Si 1.86796 * 120.00190 * 2 1 4 4 H 1.48508 * 109.47130 * 270.00349 * 3 2 1 5 5 H 1.48497 * 109.47133 * 29.99918 * 3 2 1 6 6 H 1.48491 * 109.47334 * 150.00167 * 3 2 1 7 7 C 1.38808 * 119.99446 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00466 * 0.02562 * 7 2 1 9 9 O 1.34855 * 119.99422 * 179.97438 * 7 2 1 10 10 C 1.34747 * 116.99934 * 180.02562 * 9 7 2 11 11 O 1.21522 * 120.00024 * 0.02562 * 10 9 7 12 12 C 1.47557 * 120.00046 * 179.97438 * 10 9 7 13 13 C 1.39740 * 120.09880 * 0.02562 * 12 10 9 14 14 C 1.37888 * 120.00622 * 180.25323 * 13 12 10 15 15 C 1.38497 * 120.21465 * 359.44211 * 14 13 12 16 16 F 1.35090 * 119.90472 * 180.26139 * 15 14 13 17 17 C 1.39270 * 120.18966 * 0.55516 * 15 14 13 18 18 N 1.39882 * 120.00110 * 179.74985 * 17 15 14 19 19 C 1.38457 * 119.99346 * 359.72252 * 17 15 14 20 20 H 0.97003 * 119.99971 * 359.97438 * 1 2 3 21 21 H 1.08002 * 119.99238 * 359.96740 * 13 12 10 22 22 H 1.08005 * 119.89552 * 179.72208 * 14 13 12 23 23 H 0.96995 * 119.99574 * 179.97438 * 18 17 15 24 24 H 0.96996 * 120.00207 * 359.97415 * 18 17 15 25 25 H 1.07998 * 120.10882 * 179.97438 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4458 2.6526 0.7000 6 1 3.5458 1.4401 0.6999 7 6 2.0082 -1.2022 0.0005 8 1 1.4682 -2.1374 0.0005 9 8 3.3567 -1.2022 0.0000 10 6 3.9685 -2.4028 0.0000 11 8 3.3066 -3.4220 0.0001 12 6 5.4420 -2.4800 -0.0011 13 6 6.2051 -1.3094 -0.0016 14 6 7.5820 -1.3838 -0.0080 15 6 8.2134 -2.6165 -0.0021 16 9 9.5627 -2.6820 -0.0030 17 6 7.4613 -3.7886 -0.0015 18 7 8.1031 -5.0315 -0.0009 19 6 6.0782 -3.7235 -0.0009 20 1 -0.4850 0.8401 0.0004 21 1 5.7164 -0.3463 -0.0018 22 1 8.1700 -0.4779 -0.0129 23 1 7.5792 -5.8478 -0.0001 24 1 9.0720 -5.0770 -0.0013 25 1 5.4932 -4.6313 -0.0008 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041047936.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:34 Heat of formation + Delta-G solvation = -98.221384 kcal Electronic energy + Delta-G solvation = -14617.287002 eV Core-core repulsion = 11703.643581 eV Total energy + Delta-G solvation = -2913.643421 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 225.059 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.79144 -39.64122 -38.33569 -35.37724 -34.54259 -32.38836 -30.57468 -28.71896 -25.79058 -23.37071 -22.44192 -20.18622 -18.12075 -17.68336 -17.47008 -16.82560 -15.86009 -15.58694 -15.07391 -14.73320 -14.72065 -14.10694 -13.72036 -12.97058 -12.77203 -12.64206 -12.37386 -12.00901 -11.38063 -11.06257 -10.73542 -10.49376 -10.40155 -9.76705 -9.28963 -8.76153 -8.69335 -7.57189 -6.45378 -4.16191 0.94600 1.52524 3.10961 3.20897 3.28685 3.34155 3.63873 4.11144 4.14392 4.19820 4.29860 4.86938 5.08044 5.31057 5.46561 5.53733 5.80965 6.13645 6.23250 6.46805 6.66148 6.82663 7.33856 7.61897 7.66388 7.96438 8.56490 8.92238 9.61173 10.62285 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.045386 B = 0.007231 C = 0.006251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.776442 B = 3871.388623 C = 4478.322029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.066 3.934 3 Si 0.905 3.095 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.257 1.257 7 C -0.373 4.373 8 H 0.112 0.888 9 O -0.239 6.239 10 C 0.443 3.557 11 O -0.536 6.536 12 C -0.048 4.048 13 C -0.106 4.106 14 C -0.116 4.116 15 C 0.026 3.974 16 F -0.146 7.146 17 C 0.178 3.822 18 N -0.876 5.876 19 C -0.122 4.122 20 H 0.282 0.718 21 H 0.143 0.857 22 H 0.138 0.862 23 H 0.403 0.597 24 H 0.400 0.600 25 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.059 -3.181 0.006 16.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.139 4.139 3 Si 0.730 3.270 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.181 1.181 7 C -0.449 4.449 8 H 0.129 0.871 9 O -0.147 6.147 10 C 0.291 3.709 11 O -0.432 6.432 12 C -0.050 4.050 13 C -0.126 4.126 14 C -0.135 4.135 15 C 0.002 3.998 16 F -0.125 7.125 17 C 0.073 3.927 18 N -0.417 5.417 19 C -0.145 4.145 20 H 0.092 0.908 21 H 0.161 0.839 22 H 0.156 0.844 23 H 0.232 0.768 24 H 0.228 0.772 25 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 15.697 -3.256 0.009 16.031 hybrid contribution 0.566 0.362 -0.014 0.672 sum 16.262 -2.894 -0.005 16.518 Atomic orbital electron populations 1.69596 1.05810 1.28697 1.46375 1.24593 0.95045 0.98847 0.95443 0.86212 0.80439 0.81245 0.79105 1.19640 1.20635 1.18103 1.20735 0.76105 0.97124 1.50893 0.87069 1.83530 1.23956 1.30998 1.76245 1.20373 0.87604 0.82740 0.80222 1.90673 1.66416 1.35990 1.50163 1.19149 0.91125 0.93345 1.01400 1.21191 0.92310 0.98968 1.00176 1.20857 0.95084 0.95883 1.01655 1.17304 0.76402 0.93372 1.12729 1.91410 1.29129 1.97146 1.94806 1.17491 0.91556 0.85478 0.98151 1.42259 1.09292 1.04288 1.85885 1.20521 0.90909 0.98364 1.04701 0.90805 0.83877 0.84438 0.76839 0.77176 0.83906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.18 13.96 55.49 0.77 -24.40 15 2 C 0.07 1.84 5.50 -17.51 -0.10 1.74 15 3 Si 0.91 20.81 28.62 -169.99 -4.86 15.95 15 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 15 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 15 6 H -0.26 -5.70 7.11 56.52 0.40 -5.30 15 7 C -0.37 -10.96 10.11 30.94 0.31 -10.65 15 8 H 0.11 3.59 7.09 -52.49 -0.37 3.22 15 9 O -0.24 -6.27 7.81 -21.68 -0.17 -6.44 15 10 C 0.44 10.70 7.83 34.53 0.27 10.97 15 11 O -0.54 -14.36 15.59 -19.28 -0.30 -14.66 15 12 C -0.05 -0.91 5.87 -105.00 -0.62 -1.52 15 13 C -0.11 -1.74 9.61 -39.15 -0.38 -2.12 15 14 C -0.12 -1.60 10.00 -39.61 -0.40 -1.99 15 15 C 0.03 0.36 7.32 -39.10 -0.29 0.07 15 16 F -0.15 -1.92 16.63 2.25 0.04 -1.88 15 17 C 0.18 2.45 6.75 -83.72 -0.57 1.89 15 18 N -0.88 -8.96 9.10 32.44 0.30 -8.66 15 19 C -0.12 -1.98 9.44 -38.96 -0.37 -2.34 15 20 H 0.28 7.44 8.31 -40.82 -0.34 7.10 15 21 H 0.14 2.35 7.60 -52.49 -0.40 1.95 15 22 H 0.14 1.53 8.06 -52.48 -0.42 1.10 15 23 H 0.40 3.37 8.84 -40.82 -0.36 3.01 15 24 H 0.40 3.46 8.31 -40.82 -0.34 3.12 15 25 H 0.14 2.27 7.65 -52.49 -0.40 1.87 15 LS Contribution 241.29 15.07 3.64 3.64 Total: -1.00 -31.70 241.29 -4.14 -35.84 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -1.43 Total: 4.57 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: -2.12 Total: -3.96 kcal Atomic # 7 Polarization: -34.14 SS G_CDS: 1.07 Total: -33.07 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: -0.47 Total: -21.09 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.04 Total: -1.88 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.86 Total: 15.95 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -31.70 -4.14 -35.84 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041047936.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.381 kcal (2) G-P(sol) polarization free energy of solvation -31.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds