Wall clock time and date at job start Mon Mar 30 2020 02:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31425 * 1 3 3 Si 1.86796 * 120.00190 * 2 1 4 4 H 1.48508 * 109.47130 * 270.00349 * 3 2 1 5 5 H 1.48497 * 109.47133 * 29.99918 * 3 2 1 6 6 H 1.48491 * 109.47334 * 150.00167 * 3 2 1 7 7 C 1.38808 * 119.99446 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00466 * 0.02562 * 7 2 1 9 9 O 1.34855 * 119.99422 * 179.97438 * 7 2 1 10 10 C 1.34747 * 116.99934 * 180.02562 * 9 7 2 11 11 O 1.21522 * 120.00024 * 0.02562 * 10 9 7 12 12 C 1.47557 * 120.00046 * 179.97438 * 10 9 7 13 13 C 1.39740 * 120.09880 * 0.02562 * 12 10 9 14 14 C 1.37888 * 120.00622 * 180.25323 * 13 12 10 15 15 C 1.38497 * 120.21465 * 359.44211 * 14 13 12 16 16 F 1.35090 * 119.90472 * 180.26139 * 15 14 13 17 17 C 1.39270 * 120.18966 * 0.55516 * 15 14 13 18 18 N 1.39882 * 120.00110 * 179.74985 * 17 15 14 19 19 C 1.38457 * 119.99346 * 359.72252 * 17 15 14 20 20 H 0.97003 * 119.99971 * 359.97438 * 1 2 3 21 21 H 1.08002 * 119.99238 * 359.96740 * 13 12 10 22 22 H 1.08005 * 119.89552 * 179.72208 * 14 13 12 23 23 H 0.96995 * 119.99574 * 179.97438 * 18 17 15 24 24 H 0.96996 * 120.00207 * 359.97415 * 18 17 15 25 25 H 1.07998 * 120.10882 * 179.97438 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4458 2.6526 0.7000 6 1 3.5458 1.4401 0.6999 7 6 2.0082 -1.2022 0.0005 8 1 1.4682 -2.1374 0.0005 9 8 3.3567 -1.2022 0.0000 10 6 3.9685 -2.4028 0.0000 11 8 3.3066 -3.4220 0.0001 12 6 5.4420 -2.4800 -0.0011 13 6 6.2051 -1.3094 -0.0016 14 6 7.5820 -1.3838 -0.0080 15 6 8.2134 -2.6165 -0.0021 16 9 9.5627 -2.6820 -0.0030 17 6 7.4613 -3.7886 -0.0015 18 7 8.1031 -5.0315 -0.0009 19 6 6.0782 -3.7235 -0.0009 20 1 -0.4850 0.8401 0.0004 21 1 5.7164 -0.3463 -0.0018 22 1 8.1700 -0.4779 -0.0129 23 1 7.5792 -5.8478 -0.0001 24 1 9.0720 -5.0770 -0.0013 25 1 5.4932 -4.6313 -0.0008 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041047936.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:34 Heat of formation + Delta-G solvation = -120.355581 kcal Electronic energy + Delta-G solvation = -14618.246812 eV Core-core repulsion = 11703.643581 eV Total energy + Delta-G solvation = -2914.603232 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 225.059 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.89087 -41.39794 -39.79985 -37.40259 -35.65287 -34.51882 -31.91500 -29.90896 -27.76782 -24.92797 -23.64510 -21.84804 -20.21161 -19.19541 -18.70741 -18.02820 -17.42306 -16.84377 -16.60553 -16.55566 -15.99914 -15.84251 -14.87798 -14.61569 -14.37438 -14.03365 -13.88266 -13.62347 -13.26753 -12.44744 -12.34900 -12.21658 -11.83705 -11.78724 -11.27811 -10.84558 -9.97245 -8.63668 -8.56976 -6.42130 -0.40604 0.34552 1.35971 1.37183 1.56541 1.66004 2.21166 2.30620 2.64436 2.81296 2.96652 3.14453 3.73784 4.03242 4.13169 4.20064 4.66983 4.82454 4.88701 5.15356 5.36174 5.44688 5.65491 5.87065 6.33635 6.46677 6.77834 6.83939 7.52260 8.55487 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.045386 B = 0.007231 C = 0.006251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.776442 B = 3871.388623 C = 4478.322029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.018 3.982 3 Si 0.982 3.018 4 H -0.257 1.257 5 H -0.265 1.265 6 H -0.242 1.242 7 C -0.408 4.408 8 H 0.058 0.942 9 O -0.242 6.242 10 C 0.448 3.552 11 O -0.572 6.572 12 C -0.077 4.077 13 C -0.106 4.106 14 C -0.100 4.100 15 C 0.038 3.962 16 F -0.135 7.135 17 C 0.188 3.812 18 N -0.860 5.860 19 C -0.126 4.126 20 H 0.291 0.709 21 H 0.144 0.856 22 H 0.174 0.826 23 H 0.413 0.587 24 H 0.412 0.588 25 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.714 -1.919 0.010 19.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.183 4.183 3 Si 0.800 3.200 4 H -0.181 1.181 5 H -0.190 1.190 6 H -0.166 1.166 7 C -0.484 4.484 8 H 0.076 0.924 9 O -0.151 6.151 10 C 0.297 3.703 11 O -0.470 6.470 12 C -0.079 4.079 13 C -0.127 4.127 14 C -0.119 4.119 15 C 0.013 3.987 16 F -0.114 7.114 17 C 0.081 3.919 18 N -0.402 5.402 19 C -0.149 4.149 20 H 0.101 0.899 21 H 0.162 0.838 22 H 0.191 0.809 23 H 0.244 0.756 24 H 0.242 0.758 25 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 19.378 -2.054 0.013 19.487 hybrid contribution -0.371 -0.272 -0.018 0.460 sum 19.007 -2.326 -0.005 19.149 Atomic orbital electron populations 1.69691 1.07709 1.30484 1.47239 1.25628 0.95990 1.02850 0.93848 0.85103 0.79396 0.75368 0.80093 1.18146 1.18988 1.16554 1.20380 0.77549 0.95987 1.54465 0.92398 1.83532 1.22090 1.31812 1.77635 1.21552 0.89877 0.81673 0.77173 1.90641 1.68028 1.37076 1.51229 1.18929 0.87606 0.95692 1.05711 1.21192 0.93367 0.97881 1.00257 1.21107 0.93908 0.97295 0.99553 1.17383 0.76813 0.93352 1.11109 1.91454 1.28291 1.97101 1.94513 1.17409 0.90554 0.86970 0.96968 1.42274 1.10070 1.03544 1.84278 1.20448 0.92057 0.97249 1.05138 0.89864 0.83849 0.80852 0.75625 0.75754 0.84404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.90 13.96 21.63 0.30 -54.60 15 2 C 0.02 1.01 5.50 84.89 0.47 1.48 15 3 Si 0.98 42.58 28.62 68.60 1.96 44.54 15 4 H -0.26 -10.52 7.11 99.48 0.71 -9.81 15 5 H -0.27 -10.75 7.11 99.48 0.71 -10.04 15 6 H -0.24 -9.84 7.11 99.48 0.71 -9.14 15 7 C -0.41 -25.31 10.11 67.96 0.69 -24.62 15 8 H 0.06 4.09 7.09 -2.92 -0.02 4.07 15 9 O -0.24 -13.08 7.81 11.17 0.09 -12.99 15 10 C 0.45 22.44 7.83 70.28 0.55 22.99 15 11 O -0.57 -32.45 15.59 19.76 0.31 -32.15 15 12 C -0.08 -2.89 5.87 -20.11 -0.12 -3.01 15 13 C -0.11 -3.25 9.61 22.55 0.22 -3.04 15 14 C -0.10 -2.33 10.00 22.25 0.22 -2.11 15 15 C 0.04 0.89 7.32 22.58 0.17 1.05 15 16 F -0.13 -2.87 16.63 44.97 0.75 -2.12 15 17 C 0.19 4.60 6.75 38.16 0.26 4.86 15 18 N -0.86 -14.64 9.10 -51.30 -0.47 -15.11 15 19 C -0.13 -3.93 9.44 22.67 0.21 -3.72 15 20 H 0.29 15.72 8.31 -92.71 -0.77 14.95 15 21 H 0.14 4.37 7.60 -2.91 -0.02 4.35 15 22 H 0.17 2.86 8.06 -2.91 -0.02 2.83 15 23 H 0.41 5.72 8.84 -92.71 -0.82 4.90 15 24 H 0.41 5.45 8.31 -92.71 -0.77 4.68 15 25 H 0.14 4.39 7.65 -2.91 -0.02 4.37 15 Total: -1.00 -72.67 241.29 5.28 -67.40 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -0.33 Total: 11.15 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: 2.66 Total: -6.12 kcal Atomic # 7 Polarization: -69.54 SS G_CDS: -0.16 Total: -69.71 kcal Atomic # 8 Polarization: -45.54 SS G_CDS: 0.40 Total: -45.14 kcal Atomic # 9 Polarization: -2.87 SS G_CDS: 0.75 Total: -2.12 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 1.96 Total: 44.54 kcal Total: -72.67 5.28 -67.40 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041047936.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.958 kcal (2) G-P(sol) polarization free energy of solvation -72.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds