Wall clock time and date at job start Mon Mar 30 2020 03:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86806 * 119.99823 * 2 1 4 4 H 1.48494 * 109.47434 * 240.00059 * 3 2 1 5 5 H 1.48492 * 109.47076 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46845 * 119.99963 * 3 2 1 7 7 C 1.38809 * 120.00574 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00650 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99862 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00329 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47314 * 180.02562 * 10 9 7 12 12 C 1.50700 * 109.47104 * 180.02562 * 11 10 9 13 13 C 1.38239 * 119.98824 * 270.29704 * 12 11 10 14 14 C 1.38212 * 120.01553 * 180.25745 * 13 12 11 15 15 C 1.38361 * 119.98341 * 359.46433 * 14 13 12 16 16 Cl 1.73597 * 120.00859 * 180.27890 * 15 14 13 17 17 C 1.38346 * 119.97306 * 0.25744 * 15 14 13 18 18 C 1.38210 * 119.98768 * 0.02562 * 17 15 14 19 19 H 0.96993 * 120.00329 * 359.97438 * 1 2 3 20 20 H 0.97009 * 119.99608 * 0.02562 * 9 7 2 21 21 H 1.09004 * 109.47279 * 59.99859 * 10 9 7 22 22 H 1.09000 * 109.47337 * 300.00501 * 10 9 7 23 23 H 1.08993 * 109.47106 * 60.00039 * 11 10 9 24 24 H 1.08996 * 109.46854 * 299.99697 * 11 10 9 25 25 H 1.08004 * 119.99430 * 359.97438 * 13 12 11 26 26 H 1.08002 * 120.01126 * 179.75014 * 14 13 12 27 27 H 1.08002 * 120.00348 * 180.02562 * 17 15 14 28 28 H 1.08002 * 119.99295 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6966 -1.2124 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0904 -1.2021 -0.0010 9 7 1.3257 -2.3881 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 6 1.0640 -4.8197 -0.0012 12 6 1.8176 -6.1248 -0.0005 13 6 2.1693 -6.7201 -1.1976 14 6 2.8558 -7.9197 -1.1977 15 6 3.2007 -8.5191 0.0007 16 17 4.0692 -10.0222 0.0013 17 6 2.8534 -7.9199 1.1983 18 6 2.1618 -6.7233 1.1971 19 1 -0.4850 0.8400 0.0004 20 1 0.3556 -2.3881 -0.0005 21 1 2.6849 -3.7145 0.8895 22 1 2.6849 -3.7145 -0.8905 23 1 0.4377 -4.7618 -0.8913 24 1 0.4371 -4.7622 0.8886 25 1 1.9037 -6.2500 -2.1330 26 1 3.1270 -8.3868 -2.1329 27 1 3.1227 -8.3872 2.1341 28 1 1.8903 -6.2557 2.1320 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042237679.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:25 Heat of formation + Delta-G solvation = -1.695681 kcal Electronic energy + Delta-G solvation = -12390.832305 eV Core-core repulsion = 10045.544022 eV Total energy + Delta-G solvation = -2345.288283 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.39303 -37.61624 -36.82359 -34.36718 -32.28935 -32.00168 -28.95536 -25.81011 -23.77131 -23.52930 -21.91151 -19.23192 -17.96806 -16.76869 -16.68185 -16.14884 -15.42297 -15.20095 -15.05051 -14.39280 -14.38067 -14.29058 -13.09181 -12.98169 -12.90578 -12.63669 -12.30296 -12.19941 -12.09565 -12.00825 -11.73214 -11.72500 -10.94140 -9.98349 -9.50539 -9.02732 -7.96351 -5.26158 0.16517 0.35329 1.16304 1.47547 1.50758 1.57068 2.54625 2.66765 3.36985 3.70763 3.82629 3.98621 4.24052 4.34673 4.40425 4.45689 4.56907 4.69482 4.83648 5.01180 5.19446 5.25449 5.26771 5.29475 5.47863 5.68130 5.85811 6.25899 7.32127 8.06708 8.30909 9.26818 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.071397 B = 0.004320 C = 0.004266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 392.080828 B = 6479.434495 C = 6561.495990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.075 4.075 3 Si 0.976 3.024 4 H -0.277 1.277 5 H -0.293 1.293 6 H -0.277 1.277 7 C -0.251 4.251 8 H 0.074 0.926 9 N -0.748 5.748 10 C 0.161 3.839 11 C -0.078 4.078 12 C -0.074 4.074 13 C -0.110 4.110 14 C -0.110 4.110 15 C -0.051 4.051 16 Cl -0.072 7.072 17 C -0.110 4.110 18 C -0.110 4.110 19 H 0.253 0.747 20 H 0.375 0.625 21 H 0.019 0.981 22 H 0.019 0.981 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.141 0.859 26 H 0.149 0.851 27 H 0.149 0.851 28 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.697 -18.722 -0.001 19.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.267 4.267 3 Si 0.804 3.196 4 H -0.203 1.203 5 H -0.219 1.219 6 H -0.203 1.203 7 C -0.382 4.382 8 H 0.092 0.908 9 N -0.391 5.391 10 C 0.034 3.966 11 C -0.116 4.116 12 C -0.075 4.075 13 C -0.128 4.128 14 C -0.129 4.129 15 C -0.077 4.077 16 Cl -0.043 7.043 17 C -0.129 4.129 18 C -0.128 4.128 19 H 0.061 0.939 20 H 0.207 0.793 21 H 0.037 0.963 22 H 0.037 0.963 23 H 0.094 0.906 24 H 0.094 0.906 25 H 0.158 0.842 26 H 0.167 0.833 27 H 0.167 0.833 28 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 5.935 -18.760 -0.001 19.677 hybrid contribution 0.000 0.922 0.001 0.922 sum 5.935 -17.838 0.000 18.800 Atomic orbital electron populations 1.69801 1.06590 1.26301 1.59204 1.25606 0.96480 1.01208 1.03454 0.85183 0.77224 0.78948 0.78240 1.20331 1.21917 1.20341 1.19596 0.91498 0.85400 1.41735 0.90801 1.42585 1.05741 1.01189 1.89548 1.20713 0.93793 0.84412 0.97650 1.20636 0.97191 0.90357 1.03428 1.19985 0.97935 0.95666 0.93932 1.21238 0.98130 0.94971 0.98467 1.21229 0.98572 0.95502 0.97586 1.21063 1.00957 0.90120 0.95591 1.98357 1.75244 1.31752 1.98978 1.21225 0.98519 0.95548 0.97597 1.21239 0.98116 0.94995 0.98453 0.93867 0.79258 0.96332 0.96332 0.90601 0.90609 0.84165 0.83305 0.83306 0.84161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.39 13.06 21.65 0.28 -59.11 15 2 C -0.08 -4.35 5.50 84.86 0.47 -3.88 15 3 Si 0.98 46.19 29.55 68.60 2.03 48.22 15 4 H -0.28 -12.63 7.11 99.48 0.71 -11.93 15 5 H -0.29 -13.88 7.11 99.48 0.71 -13.17 15 6 H -0.28 -12.64 7.11 99.48 0.71 -11.93 15 7 C -0.25 -14.21 9.99 84.03 0.84 -13.37 15 8 H 0.07 4.03 7.83 -2.91 -0.02 4.01 15 9 N -0.75 -38.49 5.60 -343.45 -1.92 -40.41 15 10 C 0.16 6.46 6.24 86.38 0.54 7.00 15 11 C -0.08 -2.46 5.46 29.85 0.16 -2.30 15 12 C -0.07 -1.97 5.13 -19.86 -0.10 -2.07 15 13 C -0.11 -2.61 9.70 22.26 0.22 -2.40 15 14 C -0.11 -2.35 9.83 22.29 0.22 -2.13 15 15 C -0.05 -1.09 6.32 22.32 0.14 -0.95 15 16 Cl -0.07 -1.39 28.96 -2.72 -0.08 -1.47 15 17 C -0.11 -2.35 9.83 22.29 0.22 -2.13 15 18 C -0.11 -2.61 9.70 22.26 0.22 -2.40 15 19 H 0.25 14.98 8.31 -92.71 -0.77 14.21 15 20 H 0.38 20.27 7.67 -92.70 -0.71 19.56 15 21 H 0.02 0.76 8.14 -2.38 -0.02 0.74 15 22 H 0.02 0.76 8.14 -2.39 -0.02 0.74 15 23 H 0.08 2.35 8.09 -2.39 -0.02 2.33 15 24 H 0.08 2.35 8.08 -2.39 -0.02 2.33 15 25 H 0.14 3.04 8.06 -2.91 -0.02 3.01 15 26 H 0.15 2.53 8.06 -2.91 -0.02 2.50 15 27 H 0.15 2.52 8.06 -2.91 -0.02 2.50 15 28 H 0.14 3.03 8.06 -2.91 -0.02 3.01 15 Total: -1.00 -63.16 264.69 3.67 -59.49 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: 0.45 Total: 17.92 kcal Atomic # 6 Polarization: -27.54 SS G_CDS: 2.92 Total: -24.63 kcal Atomic # 7 Polarization: -97.88 SS G_CDS: -1.64 Total: -99.52 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Atomic # 17 Polarization: -1.39 SS G_CDS: -0.08 Total: -1.47 kcal Total: -63.16 3.67 -59.49 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042237679.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.791 kcal (2) G-P(sol) polarization free energy of solvation -63.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds