Wall clock time and date at job start Mon Mar 30 2020 03:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38190 * 120.05112 * 2 1 4 4 Cl 1.73602 * 119.96772 * 359.97438 * 3 2 1 5 5 C 1.38432 * 120.06555 * 180.25575 * 3 2 1 6 6 C 1.38329 * 120.16159 * 359.45165 * 5 3 2 7 7 C 1.38032 * 120.10510 * 0.54671 * 6 5 3 8 8 C 1.39040 * 120.05506 * 179.97438 * 2 1 3 9 9 N 1.39294 * 120.08003 * 0.03650 * 8 2 1 10 10 C 1.46495 * 120.00238 * 270.00413 * 9 8 2 11 11 C 1.36858 * 119.99921 * 90.00580 * 9 8 2 12 12 H 1.07997 * 119.99595 * 23.07306 * 11 9 8 13 13 C 1.38792 * 119.99940 * 203.07987 * 11 9 8 14 14 N 1.31594 * 119.99854 * 13.32246 * 13 11 9 15 15 Si 1.86802 * 119.99948 * 193.32245 * 13 11 9 16 16 H 1.48499 * 109.46725 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.47023 * 119.99867 * 15 13 11 18 18 H 1.48498 * 109.47259 * 239.99882 * 15 13 11 19 19 H 1.08999 * 109.47189 * 90.00052 * 1 2 3 20 20 H 1.09004 * 109.46674 * 209.99954 * 1 2 3 21 21 H 1.09000 * 109.47262 * 329.99651 * 1 2 3 22 22 H 1.07998 * 119.91793 * 179.72515 * 5 3 2 23 23 H 1.08007 * 119.94773 * 180.25501 * 6 5 3 24 24 H 1.07999 * 120.03685 * 179.70400 * 7 6 5 25 25 H 1.09002 * 109.47499 * 95.12941 * 10 9 8 26 26 H 1.09002 * 109.47366 * 215.13277 * 10 9 8 27 27 H 1.09000 * 109.47405 * 335.12871 * 10 9 8 28 28 H 0.97005 * 119.99858 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1990 1.1961 0.0000 4 17 1.3315 2.6999 -0.0007 5 6 3.5833 1.1965 -0.0053 6 6 4.2787 0.0007 0.0007 7 6 3.5944 -1.1981 0.0008 8 6 2.2034 -1.2035 0.0005 9 7 1.5097 -2.4114 0.0003 10 6 1.1442 -3.0465 1.2688 11 6 1.1697 -3.0050 -1.1850 12 1 1.7249 -2.7756 -2.0825 13 6 0.1115 -3.9018 -1.2337 14 7 -0.7253 -3.9875 -0.2217 15 14 -0.1249 -4.9869 -2.7356 16 1 0.9425 -4.6991 -3.7271 17 1 -0.0538 -6.4140 -2.3313 18 1 -1.4515 -4.7099 -3.3427 19 1 -0.3633 0.0000 -1.0276 20 1 -0.3633 -0.8900 0.5139 21 1 -0.3634 0.8899 0.5139 22 1 4.1217 2.1327 -0.0098 23 1 5.3587 0.0050 0.0007 24 1 4.1384 -2.1311 0.0007 25 1 0.1263 -2.7633 1.5369 26 1 1.2042 -4.1297 1.1635 27 1 1.8301 -2.7189 2.0501 28 1 -1.4651 -4.6140 -0.2558 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049811408.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:09 Heat of formation + Delta-G solvation = 36.985772 kcal Electronic energy + Delta-G solvation = -13415.793919 eV Core-core repulsion = 11072.182990 eV Total energy + Delta-G solvation = -2343.610929 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.97848 -36.18860 -35.12170 -32.03158 -31.30389 -28.82153 -26.33831 -25.86165 -23.33611 -21.17332 -20.26492 -17.15685 -16.04406 -15.34374 -14.96321 -14.37298 -13.68463 -13.56060 -12.91345 -12.73215 -12.24939 -11.79577 -11.66369 -11.20587 -11.10394 -10.88479 -10.84332 -10.70113 -10.52780 -10.26598 -10.11918 -9.97677 -8.70638 -8.04684 -7.86704 -7.02033 -5.86731 -3.37213 1.79607 1.92780 2.62020 3.32115 3.39907 3.42275 4.24706 4.41587 5.23593 5.30009 5.41637 5.52610 5.75320 5.94901 6.22107 6.35319 6.38314 6.54038 6.65850 6.81109 6.88219 7.05618 7.19582 7.37511 7.45021 7.64303 7.74459 8.33867 9.09350 9.77991 10.17912 11.18026 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.035524 B = 0.008726 C = 0.008082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.005115 B = 3207.936714 C = 3463.805040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.089 4.089 3 C -0.034 4.034 4 Cl -0.094 7.094 5 C -0.138 4.138 6 C -0.116 4.116 7 C -0.133 4.133 8 C 0.221 3.779 9 N -0.564 5.564 10 C 0.163 3.837 11 C -0.259 4.259 12 H 0.071 0.929 13 C 0.011 3.989 14 N -0.901 5.901 15 Si 0.908 3.092 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.288 1.288 19 H 0.066 0.934 20 H 0.086 0.914 21 H 0.051 0.949 22 H 0.120 0.880 23 H 0.120 0.880 24 H 0.122 0.878 25 H 0.038 0.962 26 H 0.047 0.953 27 H 0.002 0.998 28 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.662 7.721 1.646 9.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.093 4.093 3 C -0.061 4.061 4 Cl -0.065 7.065 5 C -0.156 4.156 6 C -0.135 4.135 7 C -0.153 4.153 8 C 0.126 3.874 9 N -0.283 5.283 10 C 0.020 3.980 11 C -0.387 4.387 12 H 0.089 0.911 13 C -0.188 4.188 14 N -0.544 5.544 15 Si 0.737 3.263 16 H -0.202 1.202 17 H -0.214 1.214 18 H -0.215 1.215 19 H 0.084 0.916 20 H 0.105 0.895 21 H 0.070 0.930 22 H 0.138 0.862 23 H 0.138 0.862 24 H 0.140 0.860 25 H 0.057 0.943 26 H 0.066 0.934 27 H 0.021 0.979 28 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.397 7.676 1.682 9.533 hybrid contribution -0.278 -0.442 -0.854 1.001 sum 5.119 7.234 0.828 8.900 Atomic orbital electron populations 1.20640 0.90208 1.02557 1.02475 1.20802 0.97635 0.91343 0.99497 1.20805 0.92031 0.85642 1.07612 1.98303 1.77639 1.33443 1.97157 1.20770 0.91746 0.98487 1.04638 1.20818 0.99123 0.91820 1.01774 1.21903 0.94997 0.97733 1.00704 1.17591 0.90081 0.86883 0.92836 1.41421 1.65043 1.17694 1.04176 1.20889 0.96820 0.96959 0.83348 1.19154 1.11058 1.20996 0.87488 0.91112 1.25032 0.95244 1.00832 0.97724 1.70059 1.15345 1.37861 1.31155 0.86135 0.77732 0.80244 0.82155 1.20161 1.21400 1.21520 0.91554 0.89501 0.92963 0.86191 0.86205 0.86008 0.94328 0.93389 0.97926 0.93482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.11 9.37 36.01 0.34 -1.77 15 2 C -0.09 -1.84 5.90 -104.34 -0.62 -2.45 15 3 C -0.03 -0.61 6.31 -39.53 -0.25 -0.86 15 4 Cl -0.09 -1.50 27.29 -51.86 -1.42 -2.91 15 5 C -0.14 -2.20 9.83 -39.48 -0.39 -2.59 15 6 C -0.12 -1.85 10.04 -39.62 -0.40 -2.25 15 7 C -0.13 -2.51 9.97 -39.33 -0.39 -2.90 15 8 C 0.22 4.84 4.99 -83.85 -0.42 4.42 15 9 N -0.56 -13.90 2.00 -120.50 -0.24 -14.15 15 10 C 0.16 3.90 8.65 59.84 0.52 4.42 15 11 C -0.26 -6.93 9.63 -15.10 -0.15 -7.07 15 12 H 0.07 1.91 7.86 -52.49 -0.41 1.50 15 13 C 0.01 0.30 5.09 -17.45 -0.09 0.21 15 14 N -0.90 -24.98 10.73 55.49 0.60 -24.38 15 15 Si 0.91 21.27 29.57 -169.99 -5.03 16.24 15 16 H -0.28 -6.38 7.11 56.52 0.40 -5.98 15 17 H -0.29 -6.75 7.11 56.52 0.40 -6.34 15 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 15 19 H 0.07 1.41 8.14 -51.93 -0.42 0.98 15 20 H 0.09 2.02 6.54 -51.93 -0.34 1.68 15 21 H 0.05 0.95 6.90 -51.93 -0.36 0.59 15 22 H 0.12 1.61 8.06 -52.49 -0.42 1.18 15 23 H 0.12 1.52 8.06 -52.48 -0.42 1.09 15 24 H 0.12 2.22 8.06 -52.49 -0.42 1.80 15 25 H 0.04 0.98 6.69 -51.93 -0.35 0.63 15 26 H 0.05 1.21 7.35 -51.93 -0.38 0.83 15 27 H 0.00 0.05 8.01 -51.93 -0.42 -0.37 15 28 H 0.25 6.86 8.31 -40.82 -0.34 6.52 15 LS Contribution 254.69 15.07 3.84 3.84 Total: -1.00 -27.34 254.69 -7.17 -34.51 By element: Atomic # 1 Polarization: 0.78 SS G_CDS: -3.08 Total: -2.30 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: -1.84 Total: -10.85 kcal Atomic # 7 Polarization: -38.88 SS G_CDS: 0.35 Total: -38.53 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.24 kcal Atomic # 17 Polarization: -1.50 SS G_CDS: -1.42 Total: -2.91 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -27.34 -7.17 -34.51 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049811408.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.498 kcal (2) G-P(sol) polarization free energy of solvation -27.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds