Wall clock time and date at job start Mon Mar 30 2020 02:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30700 * 1 3 3 Si 1.86790 * 119.99883 * 2 1 4 4 H 1.48500 * 109.47100 * 239.99389 * 3 2 1 5 5 H 1.48501 * 109.47566 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47293 * 119.99614 * 3 2 1 7 7 C 1.40247 * 119.99760 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99674 * 180.02562 * 7 2 1 9 9 C 1.39911 * 120.00179 * 0.02562 * 7 2 1 10 10 N 1.31364 * 125.57115 * 359.97438 * 9 7 2 11 11 C 1.31377 * 116.61542 * 180.02562 * 10 9 7 12 12 C 1.36105 * 114.28034 * 359.96664 * 11 10 9 13 13 S 1.70886 * 109.77128 * 0.04181 * 12 11 10 14 14 C 1.51321 * 124.79290 * 180.02562 * 12 11 10 15 15 H 1.08996 * 109.75610 * 256.40575 * 14 12 11 16 16 O 1.42905 * 109.60731 * 135.97615 * 14 12 11 17 17 C 1.53191 * 108.62970 * 16.23841 * 14 12 11 18 18 C 1.53132 * 109.00666 * 310.27272 * 17 14 12 19 19 C 1.52365 * 123.21995 * 179.97438 * 11 10 9 20 20 H 0.96997 * 120.00002 * 0.02562 * 1 2 3 21 21 H 0.96696 * 114.00036 * 60.86088 * 16 14 12 22 22 H 1.08997 * 109.55250 * 70.13956 * 17 14 12 23 23 H 1.09006 * 109.54812 * 190.32364 * 17 14 12 24 24 H 1.09001 * 109.48222 * 190.96633 * 18 17 14 25 25 H 1.08999 * 109.48239 * 311.00490 * 18 17 14 26 26 H 1.08997 * 109.59150 * 77.83089 * 19 11 10 27 27 H 1.09000 * 109.71228 * 317.46132 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 3.0948 1.6963 -1.2124 5 1 1.2760 2.7464 -0.0006 6 1 3.0946 1.6964 1.2126 7 6 2.0082 -1.2146 0.0005 8 1 3.0881 -1.2146 0.0010 9 6 1.3086 -2.4263 0.0005 10 7 0.0012 -2.5538 0.0005 11 6 -0.4706 -3.7799 0.0011 12 6 0.4863 -4.7478 0.0008 13 16 2.0363 -4.0282 0.0010 14 6 0.2097 -6.2355 0.0008 15 1 0.3796 -6.6419 0.9978 16 8 1.0736 -6.8838 -0.9350 17 6 -1.2501 -6.4618 -0.4049 18 6 -2.1489 -5.5547 0.4401 19 6 -1.9600 -4.1013 0.0017 20 1 -0.4850 0.8400 -0.0004 21 1 2.0147 -6.7809 -0.7382 22 1 -1.3770 -6.2204 -1.4602 23 1 -1.5185 -7.5045 -0.2346 24 1 -3.1907 -5.8437 0.3011 25 1 -1.8809 -5.6552 1.4919 26 1 -2.3633 -3.9670 -1.0020 27 1 -2.4786 -3.4395 0.6955 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050330816.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:35 Heat of formation + Delta-G solvation = -36.880964 kcal Electronic energy + Delta-G solvation = -13317.977445 eV Core-core repulsion = 10973.207120 eV Total energy + Delta-G solvation = -2344.770325 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.52730 -36.40244 -34.46581 -33.28226 -29.03914 -28.70093 -26.21644 -22.85207 -21.84658 -20.55207 -18.09512 -17.12394 -16.37685 -16.16607 -15.14269 -14.18737 -13.85771 -13.53892 -12.87274 -12.76685 -12.63718 -12.12441 -11.53657 -11.38341 -11.28261 -10.93663 -10.74566 -10.52614 -10.44109 -10.22412 -9.61250 -9.49639 -9.36288 -7.69949 -7.65313 -7.31430 -6.75452 -4.68491 2.43459 2.94251 2.96992 3.02142 3.24044 3.63160 3.79869 4.28465 4.82312 5.14569 5.37574 5.42422 5.73407 5.80262 6.02660 6.07315 6.21713 6.42122 6.45304 6.52108 6.59224 6.78775 6.80970 7.20610 7.57796 7.91095 8.17821 8.19690 8.51179 9.88663 10.03417 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.045955 B = 0.008880 C = 0.007596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.144227 B = 3152.367529 C = 3685.181172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.704 5.704 2 C 0.070 3.930 3 Si 0.923 3.077 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.261 1.261 7 C -0.385 4.385 8 H 0.095 0.905 9 C 0.245 3.755 10 N -0.537 5.537 11 C 0.141 3.859 12 C -0.429 4.429 13 S -0.098 6.098 14 C 0.212 3.788 15 H 0.040 0.960 16 O -0.572 6.572 17 C -0.102 4.102 18 C -0.109 4.109 19 C -0.041 4.041 20 H 0.283 0.717 21 H 0.371 0.629 22 H 0.068 0.932 23 H 0.060 0.940 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.068 0.932 27 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.814 -3.653 1.006 3.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.325 5.325 2 C -0.161 4.161 3 Si 0.745 3.255 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.185 1.185 7 C -0.428 4.428 8 H 0.113 0.887 9 C -0.007 4.007 10 N -0.256 5.256 11 C 0.000 4.000 12 C -0.552 4.552 13 S 0.160 5.840 14 C 0.151 3.849 15 H 0.058 0.942 16 O -0.377 6.377 17 C -0.141 4.141 18 C -0.147 4.147 19 C -0.080 4.080 20 H 0.094 0.906 21 H 0.217 0.783 22 H 0.087 0.913 23 H 0.078 0.922 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.849 -3.654 0.738 3.823 hybrid contribution 0.062 0.697 0.263 0.748 sum -0.787 -2.956 1.001 3.219 Atomic orbital electron populations 1.69995 1.07491 1.29206 1.25841 1.26108 0.95096 1.01147 0.93704 0.86121 0.79929 0.79117 0.80284 1.18500 1.19835 1.18505 1.19005 0.94701 0.88051 1.41059 0.88739 1.23847 0.89300 0.92443 0.95100 1.67226 1.09567 1.18784 1.30050 1.20912 0.95100 0.87868 0.96166 1.24521 0.95509 0.98996 1.36212 1.82794 1.11871 1.08445 1.80855 1.19728 0.89419 0.85995 0.89742 0.94241 1.86388 1.19794 1.76777 1.54728 1.21453 0.93098 0.98655 1.00920 1.21449 0.98489 0.94930 0.99821 1.20277 0.91401 0.95045 1.01326 0.90572 0.78274 0.91307 0.92169 0.91719 0.91964 0.91375 0.90942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -18.13 11.88 55.56 0.66 -17.47 15 2 C 0.07 1.69 5.50 -17.28 -0.10 1.60 15 3 Si 0.92 17.50 29.56 -169.99 -5.03 12.48 15 4 H -0.26 -4.86 7.11 56.52 0.40 -4.46 15 5 H -0.27 -5.04 7.11 56.52 0.40 -4.64 15 6 H -0.26 -4.85 7.11 56.52 0.40 -4.44 15 7 C -0.39 -9.96 9.40 -38.20 -0.36 -10.32 15 8 H 0.09 2.24 7.85 -52.49 -0.41 1.83 15 9 C 0.24 6.70 7.07 -17.13 -0.12 6.57 15 10 N -0.54 -15.03 8.71 -8.48 -0.07 -15.10 15 11 C 0.14 3.51 6.72 -82.73 -0.56 2.96 15 12 C -0.43 -10.18 5.91 -34.77 -0.21 -10.39 15 13 S -0.10 -2.35 22.56 -107.50 -2.42 -4.78 15 14 C 0.21 4.25 3.80 -27.48 -0.10 4.15 15 15 H 0.04 0.76 8.14 -51.93 -0.42 0.34 15 16 O -0.57 -11.27 13.29 -35.23 -0.47 -11.74 15 17 C -0.10 -1.79 5.60 -26.56 -0.15 -1.94 15 18 C -0.11 -1.80 5.87 -26.67 -0.16 -1.96 15 19 C -0.04 -0.82 6.28 -27.06 -0.17 -0.99 15 20 H 0.28 6.52 8.29 -40.82 -0.34 6.18 15 21 H 0.37 6.44 8.59 45.56 0.39 6.84 15 22 H 0.07 1.27 8.10 -51.93 -0.42 0.85 15 23 H 0.06 0.91 8.14 -51.93 -0.42 0.48 15 24 H 0.06 0.87 8.14 -51.93 -0.42 0.45 15 25 H 0.06 1.02 8.10 -51.93 -0.42 0.60 15 26 H 0.07 1.33 8.14 -51.93 -0.42 0.91 15 27 H 0.07 1.44 8.14 -51.93 -0.42 1.01 15 LS Contribution 245.10 15.07 3.69 3.69 Total: -1.00 -29.62 245.10 -7.66 -37.29 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -2.11 Total: 5.94 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: -1.92 Total: -10.31 kcal Atomic # 7 Polarization: -33.16 SS G_CDS: 0.59 Total: -32.57 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: -0.47 Total: -11.74 kcal Atomic # 14 Polarization: 17.50 SS G_CDS: -5.03 Total: 12.48 kcal Atomic # 16 Polarization: -2.35 SS G_CDS: -2.42 Total: -4.78 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -29.62 -7.66 -37.29 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050330816.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.407 kcal (2) G-P(sol) polarization free energy of solvation -29.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds