Wall clock time and date at job start Mon Mar 30 2020 02:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30703 * 1 3 3 Si 1.86796 * 120.00120 * 2 1 4 4 H 1.48497 * 109.47328 * 270.00112 * 3 2 1 5 5 H 1.48499 * 109.47297 * 30.00038 * 3 2 1 6 6 H 1.48502 * 109.47197 * 150.00051 * 3 2 1 7 7 C 1.40243 * 119.99897 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00363 * 179.97438 * 7 2 1 9 9 C 1.39915 * 119.99857 * 359.97438 * 7 2 1 10 10 N 1.31372 * 125.57053 * 0.02637 * 9 7 2 11 11 C 1.31381 * 116.61121 * 179.97438 * 10 9 7 12 12 C 1.36091 * 114.28436 * 0.02580 * 11 10 9 13 13 S 1.70889 * 109.77172 * 359.96545 * 12 11 10 14 14 C 1.51324 * 124.79616 * 179.97438 * 12 11 10 15 15 H 1.09000 * 109.61401 * 103.51405 * 14 12 11 16 16 O 1.42906 * 109.61107 * 224.02799 * 14 12 11 17 17 C 1.53199 * 108.62460 * 343.76657 * 14 12 11 18 18 C 1.53126 * 109.00543 * 49.72571 * 17 14 12 19 19 C 1.52363 * 123.21395 * 180.02562 * 11 10 9 20 20 H 0.97004 * 119.99370 * 0.02562 * 1 2 3 21 21 H 0.96703 * 113.99806 * 299.14095 * 16 14 12 22 22 H 1.08995 * 109.54877 * 289.86575 * 17 14 12 23 23 H 1.09006 * 109.54093 * 169.58143 * 17 14 12 24 24 H 1.08997 * 109.47977 * 48.99679 * 18 17 14 25 25 H 1.09000 * 109.47704 * 169.02678 * 18 17 14 26 26 H 1.09004 * 109.58827 * 42.68328 * 19 11 10 27 27 H 1.08998 * 109.59397 * 282.24216 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2410 1.6177 0.0000 4 1 2.4885 2.0464 -1.4000 5 1 1.4385 2.6527 0.7000 6 1 3.5386 1.4401 0.7000 7 6 2.0082 -1.2146 -0.0005 8 1 3.0882 -1.2146 -0.0010 9 6 1.3086 -2.4262 -0.0005 10 7 0.0011 -2.5537 -0.0006 11 6 -0.4707 -3.7799 -0.0011 12 6 0.4861 -4.7477 -0.0010 13 16 2.0361 -4.0282 -0.0011 14 6 0.2095 -6.2354 -0.0009 15 1 0.3786 -6.6391 -0.9992 16 8 1.0734 -6.8839 0.9347 17 6 -1.2503 -6.4617 0.4048 18 6 -2.1491 -5.5545 -0.4402 19 6 -1.9601 -4.1011 -0.0017 20 1 -0.4849 0.8401 -0.0004 21 1 2.0145 -6.7809 0.7379 22 1 -1.3772 -6.2201 1.4601 23 1 -1.5192 -7.5040 0.2328 24 1 -1.8811 -5.6551 -1.4919 25 1 -3.1908 -5.8436 -0.3011 26 1 -2.4762 -3.4400 -0.6980 27 1 -2.3637 -3.9656 1.0017 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050330817.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:37 Heat of formation + Delta-G solvation = -57.777363 kcal Electronic energy + Delta-G solvation = -13319.046122 eV Core-core repulsion = 10973.369661 eV Total energy + Delta-G solvation = -2345.676461 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.26002 -38.10344 -36.11783 -35.01584 -30.85948 -30.30105 -28.01807 -24.55987 -23.53626 -22.20586 -19.84244 -18.83590 -18.16386 -17.84091 -16.84143 -15.88908 -15.45696 -15.10939 -14.59141 -14.43433 -14.27643 -13.71636 -13.19604 -12.98764 -12.90792 -12.63804 -12.34983 -11.98537 -11.93838 -11.76034 -11.31457 -11.20285 -11.03805 -9.62330 -9.58709 -9.22877 -8.58852 -6.62558 0.55843 1.26122 1.42917 1.49872 1.58974 1.74428 2.17823 2.44568 3.21045 3.37947 3.86220 3.99097 4.21709 4.29754 4.49345 4.53535 4.78117 4.90250 4.94034 4.98418 5.09974 5.12232 5.38878 5.44135 5.75307 6.02033 6.30315 6.59134 6.70484 7.99391 8.22932 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.045957 B = 0.008880 C = 0.007596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.124764 B = 3152.331029 C = 3685.120827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.746 5.746 2 C 0.026 3.974 3 Si 1.006 2.994 4 H -0.257 1.257 5 H -0.264 1.264 6 H -0.249 1.249 7 C -0.412 4.412 8 H 0.106 0.894 9 C 0.204 3.796 10 N -0.574 5.574 11 C 0.106 3.894 12 C -0.431 4.431 13 S -0.087 6.087 14 C 0.207 3.793 15 H 0.053 0.947 16 O -0.576 6.576 17 C -0.099 4.099 18 C -0.098 4.098 19 C -0.040 4.040 20 H 0.291 0.709 21 H 0.379 0.621 22 H 0.056 0.944 23 H 0.093 0.907 24 H 0.064 0.936 25 H 0.104 0.896 26 H 0.068 0.932 27 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.926 -4.068 -1.183 4.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.368 5.368 2 C -0.200 4.200 3 Si 0.824 3.176 4 H -0.181 1.181 5 H -0.188 1.188 6 H -0.172 1.172 7 C -0.455 4.455 8 H 0.124 0.876 9 C -0.048 4.048 10 N -0.294 5.294 11 C -0.033 4.033 12 C -0.554 4.554 13 S 0.171 5.829 14 C 0.147 3.853 15 H 0.071 0.929 16 O -0.382 6.382 17 C -0.138 4.138 18 C -0.136 4.136 19 C -0.079 4.079 20 H 0.102 0.898 21 H 0.226 0.774 22 H 0.074 0.926 23 H 0.112 0.888 24 H 0.083 0.917 25 H 0.123 0.877 26 H 0.086 0.914 27 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.963 -4.113 -0.911 4.321 hybrid contribution 0.107 0.745 -0.211 0.782 sum -0.856 -3.368 -1.122 3.651 Atomic orbital electron populations 1.70092 1.09444 1.30725 1.26564 1.27205 0.95861 1.04669 0.92293 0.84852 0.78860 0.73976 0.79951 1.18123 1.18838 1.17249 1.19529 0.95501 0.88785 1.41688 0.87634 1.24386 0.90011 0.94152 0.96210 1.67253 1.10257 1.20683 1.31246 1.21680 0.97699 0.87393 0.96547 1.25184 0.94814 1.01072 1.34359 1.82550 1.12427 1.07208 1.80741 1.19988 0.91155 0.83507 0.90699 0.92882 1.86379 1.20571 1.76405 1.54858 1.21493 0.91277 1.00786 1.00199 1.21434 1.00682 0.91945 0.99515 1.20407 0.88370 0.97693 1.01460 0.89786 0.77351 0.92564 0.88816 0.91735 0.87731 0.91368 0.91232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -39.25 11.88 21.88 0.26 -38.99 15 2 C 0.03 1.27 5.50 85.35 0.47 1.74 15 3 Si 1.01 35.54 29.56 68.60 2.03 37.57 15 4 H -0.26 -8.69 7.11 99.48 0.71 -7.98 15 5 H -0.26 -8.89 7.11 99.48 0.71 -8.18 15 6 H -0.25 -8.39 7.11 99.48 0.71 -7.68 15 7 C -0.41 -21.73 9.40 23.16 0.22 -21.51 15 8 H 0.11 5.08 7.85 -2.91 -0.02 5.06 15 9 C 0.20 11.47 7.07 85.17 0.60 12.07 15 10 N -0.57 -33.02 8.72 -180.74 -1.58 -34.59 15 11 C 0.11 5.36 6.72 42.66 0.29 5.65 15 12 C -0.43 -20.35 5.91 25.38 0.15 -20.20 15 13 S -0.09 -4.25 22.56 -56.49 -1.27 -5.53 15 14 C 0.21 7.93 3.80 30.11 0.11 8.05 15 15 H 0.05 1.91 8.14 -2.39 -0.02 1.89 15 16 O -0.58 -21.68 13.29 -148.98 -1.98 -23.66 15 17 C -0.10 -3.17 5.60 30.70 0.17 -3.00 15 18 C -0.10 -2.96 5.87 30.63 0.18 -2.79 15 19 C -0.04 -1.57 6.28 30.38 0.19 -1.38 15 20 H 0.29 13.58 8.29 -92.71 -0.77 12.81 15 21 H 0.38 12.65 8.59 -74.06 -0.64 12.02 15 22 H 0.06 1.95 8.10 -2.39 -0.02 1.93 15 23 H 0.09 2.42 8.14 -2.38 -0.02 2.40 15 24 H 0.06 1.94 8.10 -2.39 -0.02 1.92 15 25 H 0.10 2.37 8.14 -2.39 -0.02 2.35 15 26 H 0.07 2.71 8.14 -2.38 -0.02 2.69 15 27 H 0.07 2.69 8.14 -2.39 -0.02 2.67 15 Total: -1.00 -65.06 245.10 0.40 -64.66 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: 0.56 Total: 21.91 kcal Atomic # 6 Polarization: -23.75 SS G_CDS: 2.38 Total: -21.37 kcal Atomic # 7 Polarization: -72.26 SS G_CDS: -1.32 Total: -73.58 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -1.98 Total: -23.66 kcal Atomic # 14 Polarization: 35.54 SS G_CDS: 2.03 Total: 37.57 kcal Atomic # 16 Polarization: -4.25 SS G_CDS: -1.27 Total: -5.53 kcal Total: -65.06 0.40 -64.66 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050330817.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.883 kcal (2) G-P(sol) polarization free energy of solvation -65.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds