Wall clock time and date at job start Mon Mar 30 2020 03:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 119.99961 * 2 1 4 4 H 1.48501 * 109.47046 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47047 * 300.00002 * 3 2 1 6 6 H 1.48506 * 109.47069 * 59.99872 * 3 2 1 7 7 C 1.37876 * 120.00140 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00117 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99978 * 359.97438 * 7 2 1 10 10 S 1.81398 * 109.47148 * 179.97438 * 9 7 2 11 11 C 1.81403 * 103.00038 * 180.02562 * 10 9 7 12 12 C 1.50699 * 109.47243 * 180.02562 * 11 10 9 13 13 N 1.31800 * 119.08087 * 269.97792 * 12 11 10 14 14 C 1.32551 * 121.00653 * 179.72740 * 13 12 11 15 15 C 1.38113 * 119.20128 * 0.57009 * 14 13 12 16 16 C 1.39623 * 118.33128 * 359.44013 * 15 14 13 17 17 N 1.38549 * 120.53237 * 180.25187 * 16 15 14 18 18 N 1.31746 * 119.09022 * 89.99587 * 12 11 10 19 19 H 0.97002 * 120.00124 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.46773 * 60.00370 * 9 7 2 21 21 H 1.08998 * 109.47448 * 299.99977 * 9 7 2 22 22 H 1.08994 * 109.47381 * 60.00137 * 11 10 9 23 23 H 1.09007 * 109.46846 * 299.99969 * 11 10 9 24 24 H 1.08000 * 120.39525 * 180.31061 * 14 13 12 25 25 H 1.08002 * 120.83624 * 179.72217 * 15 14 13 26 26 H 0.97009 * 119.99433 * 0.02562 * 17 16 15 27 27 H 0.96996 * 120.00709 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 16 2.4299 -3.8778 0.0014 11 6 1.3516 -5.3366 0.0021 12 6 2.1955 -6.5851 0.0026 13 7 2.5538 -7.1166 -1.1491 14 6 3.3002 -8.2111 -1.1932 15 6 3.6953 -8.8054 -0.0108 16 6 3.2986 -8.2168 1.1916 17 7 3.6736 -8.7718 2.4044 18 7 2.5544 -7.1153 1.1540 19 1 -0.4850 0.8401 -0.0004 20 1 0.6241 -2.5574 -0.8881 21 1 0.6247 -2.5563 0.8919 22 1 0.7221 -5.3236 -0.8876 23 1 0.7228 -5.3232 0.8924 24 1 3.5923 -8.6354 -2.1425 25 1 4.2999 -9.7003 -0.0159 26 1 4.2165 -9.5755 2.4227 27 1 3.3934 -8.3567 3.2351 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000059357917.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:12 Heat of formation + Delta-G solvation = 16.787886 kcal Electronic energy + Delta-G solvation = -12328.503127 eV Core-core repulsion = 10018.352809 eV Total energy + Delta-G solvation = -2310.150318 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.063 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.87100 -36.65686 -35.29256 -34.35094 -32.06373 -30.69601 -29.45273 -25.30598 -24.68913 -23.60157 -19.17815 -18.82835 -18.26680 -17.20267 -16.71554 -16.62997 -16.21262 -15.83101 -15.16299 -14.81008 -14.55388 -14.43059 -14.08883 -13.70431 -12.86621 -12.74113 -12.54969 -12.12885 -11.76661 -11.53274 -10.95773 -10.74527 -10.67194 -10.19810 -9.31288 -8.48968 -8.32746 -6.46037 -0.17631 0.46040 1.07085 1.40993 1.41175 1.56236 1.95034 2.36170 2.37876 2.98621 3.01134 3.01753 3.45243 3.96381 4.20188 4.25592 4.41049 4.60669 4.71704 4.94933 4.95423 5.38611 5.57490 5.88094 5.96226 6.22622 6.60744 6.81586 7.21647 7.35698 8.79663 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.059111 B = 0.005129 C = 0.005041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.573823 B = 5457.773931 C = 5553.558405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.016 3.984 3 Si 0.979 3.021 4 H -0.266 1.266 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.536 4.536 8 H 0.061 0.939 9 C 0.094 3.906 10 S -0.286 6.286 11 C -0.018 4.018 12 C 0.370 3.630 13 N -0.573 5.573 14 C 0.162 3.838 15 C -0.281 4.281 16 C 0.420 3.580 17 N -0.819 5.819 18 N -0.592 5.592 19 H 0.271 0.729 20 H 0.020 0.980 21 H 0.019 0.981 22 H 0.103 0.897 23 H 0.100 0.900 24 H 0.202 0.798 25 H 0.184 0.816 26 H 0.428 0.572 27 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.009 -19.110 1.945 20.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.185 4.185 3 Si 0.802 3.198 4 H -0.191 1.191 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.575 4.575 8 H 0.079 0.921 9 C -0.054 4.054 10 S -0.060 6.060 11 C -0.167 4.167 12 C 0.100 3.900 13 N -0.294 5.294 14 C 0.002 3.998 15 C -0.309 4.309 16 C 0.173 3.827 17 N -0.365 5.365 18 N -0.319 5.319 19 H 0.080 0.920 20 H 0.038 0.962 21 H 0.037 0.963 22 H 0.122 0.878 23 H 0.119 0.881 24 H 0.219 0.781 25 H 0.201 0.799 26 H 0.262 0.738 27 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 7.413 -18.217 1.928 19.762 hybrid contribution -0.718 0.019 0.424 0.834 sum 6.695 -18.198 2.352 19.533 Atomic orbital electron populations 1.70061 1.07642 1.28579 1.49979 1.25910 0.95917 1.02986 0.93720 0.85199 0.78658 0.77680 0.78301 1.19064 1.19624 1.19638 1.20978 0.93395 0.90097 1.53048 0.92118 1.20807 0.94052 0.92118 0.98402 1.86615 1.20231 1.01076 1.98043 1.21818 0.98136 0.90393 1.06355 1.21578 0.91835 0.92957 0.83670 1.68213 1.17589 1.14312 1.29259 1.23593 0.87960 0.88051 1.00236 1.22504 1.09980 1.06725 0.91699 1.18932 0.87320 0.87473 0.88982 1.42121 1.58346 1.32119 1.03899 1.67619 1.19408 1.13687 1.31183 0.91981 0.96192 0.96256 0.87819 0.88142 0.78085 0.79864 0.73837 0.75933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.20 13.29 21.45 0.28 -54.92 15 2 C 0.02 0.89 5.46 84.66 0.46 1.36 15 3 Si 0.98 44.59 29.54 68.60 2.03 46.62 15 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 15 5 H -0.27 -11.84 7.11 99.48 0.71 -11.14 15 6 H -0.27 -11.84 7.11 99.48 0.71 -11.13 15 7 C -0.54 -31.71 9.13 25.60 0.23 -31.47 15 8 H 0.06 3.59 7.71 -2.91 -0.02 3.57 15 9 C 0.09 5.21 5.70 71.23 0.41 5.62 15 10 S -0.29 -13.69 21.64 -56.49 -1.22 -14.91 15 11 C -0.02 -0.69 6.37 71.24 0.45 -0.24 15 12 C 0.37 13.27 6.90 138.76 0.96 14.23 15 13 N -0.57 -18.81 10.33 -188.11 -1.94 -20.76 15 14 C 0.16 3.69 11.29 84.55 0.95 4.64 15 15 C -0.28 -5.26 10.04 22.57 0.23 -5.03 15 16 C 0.42 9.99 7.82 133.16 1.04 11.04 15 17 N -0.82 -11.92 9.06 -55.09 -0.50 -12.42 15 18 N -0.59 -19.45 10.37 -185.44 -1.92 -21.38 15 19 H 0.27 15.00 8.31 -92.71 -0.77 14.23 15 20 H 0.02 1.15 8.14 -2.39 -0.02 1.13 15 21 H 0.02 1.11 8.14 -2.39 -0.02 1.09 15 22 H 0.10 3.94 8.14 -2.39 -0.02 3.92 15 23 H 0.10 3.82 8.14 -2.39 -0.02 3.80 15 24 H 0.20 2.82 8.06 -2.91 -0.02 2.79 15 25 H 0.18 1.67 8.06 -2.91 -0.02 1.65 15 26 H 0.43 2.85 8.85 -92.70 -0.82 2.03 15 27 H 0.41 5.88 8.95 -92.71 -0.83 5.05 15 Total: -1.00 -72.83 260.75 1.01 -71.81 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -0.45 Total: 5.80 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: 4.74 Total: 0.14 kcal Atomic # 7 Polarization: -105.39 SS G_CDS: -4.08 Total: -109.47 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Atomic # 16 Polarization: -13.69 SS G_CDS: -1.22 Total: -14.91 kcal Total: -72.83 1.01 -71.81 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059357917.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.601 kcal (2) G-P(sol) polarization free energy of solvation -72.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds