Wall clock time and date at job start Mon Mar 30 2020 03:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 120.00304 * 2 1 4 4 H 1.48497 * 109.46944 * 270.00141 * 3 2 1 5 5 H 1.48506 * 109.46790 * 29.99734 * 3 2 1 6 6 H 1.48493 * 109.47420 * 149.99774 * 3 2 1 7 7 C 1.37873 * 119.99480 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00825 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99793 * 180.02562 * 7 2 1 10 10 N 1.46500 * 109.47563 * 180.02562 * 9 7 2 11 11 C 1.38697 * 119.99817 * 89.99464 * 10 9 7 12 12 N 1.30248 * 126.17000 * 174.78162 * 11 10 9 13 13 N 1.26097 * 117.62288 * 180.02562 * 12 11 10 14 14 C 1.29314 * 117.97097 * 359.97438 * 13 12 11 15 15 S 1.76480 * 107.87054 * 0.26783 * 14 13 12 16 16 C 1.46498 * 120.00099 * 269.99911 * 10 9 7 17 17 C 1.52999 * 117.49550 * 13.71804 * 16 10 9 18 18 C 1.52996 * 117.49743 * 305.09638 * 16 10 9 19 19 H 0.96996 * 119.99784 * 0.02562 * 1 2 3 20 20 H 1.08998 * 109.47507 * 59.99316 * 9 7 2 21 21 H 1.09004 * 109.46909 * 300.00116 * 9 7 2 22 22 H 1.08000 * 126.06623 * 180.02562 * 14 13 12 23 23 H 1.08999 * 115.55062 * 159.42258 * 16 10 9 24 24 H 1.08996 * 117.50319 * 359.97438 * 17 16 10 25 25 H 1.09006 * 117.49650 * 145.02595 * 17 16 10 26 26 H 1.08998 * 117.49943 * 214.97609 * 18 16 10 27 27 H 1.08997 * 117.50096 * 359.97438 * 18 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 7 3.9998 -2.5754 0.0010 11 6 4.2314 -3.2289 -1.2002 12 7 4.7520 -4.4143 -1.3425 13 7 4.8907 -4.8550 -2.5158 14 6 4.5074 -4.1029 -3.4954 15 16 3.8805 -2.6013 -2.8122 16 6 4.2436 -3.2663 1.2696 17 6 3.6768 -2.6303 2.5405 18 6 5.1825 -2.5922 2.2720 19 1 -0.4849 0.8400 -0.0004 20 1 3.8746 -0.6801 0.8910 21 1 3.8752 -0.6805 -0.8889 22 1 4.5647 -4.3483 -4.5456 23 1 4.2619 -4.3548 1.2162 24 1 3.1229 -1.6977 2.4328 25 1 3.3220 -3.3006 3.3236 26 1 5.8183 -3.2373 2.8784 27 1 5.6193 -1.6350 1.9875 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069965427.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:03 Heat of formation + Delta-G solvation = 83.584510 kcal Electronic energy + Delta-G solvation = -13295.987623 eV Core-core repulsion = 10988.733824 eV Total energy + Delta-G solvation = -2307.253799 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.063 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.66852 -39.51079 -35.66215 -34.58438 -31.80557 -29.65447 -26.61824 -24.77763 -23.24798 -22.78240 -20.42417 -19.79112 -19.14946 -18.41756 -16.85912 -16.50377 -15.94247 -15.84462 -14.97036 -14.59929 -14.12294 -14.00154 -13.83516 -13.31092 -12.74515 -12.58330 -12.30186 -11.89868 -11.68464 -11.37530 -11.21564 -11.12199 -10.99218 -10.85887 -10.47436 -8.64042 -8.35796 -6.44586 -0.18356 -0.01418 0.60290 1.34279 1.35252 1.43501 1.83127 1.87257 2.27266 2.96130 2.99350 3.62314 3.80496 3.99124 4.05217 4.14524 4.51518 4.57850 4.76764 4.79316 4.90252 5.10471 5.28600 5.30078 5.70873 6.10658 6.23590 6.60259 7.19234 7.88209 8.80115 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.024373 B = 0.011734 C = 0.008948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.555824 B = 2385.617176 C = 3128.553079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.027 3.973 3 Si 0.930 3.070 4 H -0.263 1.263 5 H -0.279 1.279 6 H -0.239 1.239 7 C -0.536 4.536 8 H 0.032 0.968 9 C 0.228 3.772 10 N -0.522 5.522 11 C 0.307 3.693 12 N -0.389 5.389 13 N -0.256 5.256 14 C -0.033 4.033 15 S 0.030 5.970 16 C 0.067 3.933 17 C -0.177 4.177 18 C -0.169 4.169 19 H 0.270 0.730 20 H 0.060 0.940 21 H 0.034 0.966 22 H 0.253 0.747 23 H 0.127 0.873 24 H 0.091 0.909 25 H 0.119 0.881 26 H 0.128 0.872 27 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.129 -1.502 -1.208 10.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.173 4.173 3 Si 0.752 3.248 4 H -0.188 1.188 5 H -0.204 1.204 6 H -0.163 1.163 7 C -0.575 4.575 8 H 0.050 0.950 9 C 0.107 3.893 10 N -0.234 5.234 11 C -0.064 4.064 12 N -0.239 5.239 13 N -0.088 5.088 14 C -0.339 4.339 15 S 0.266 5.734 16 C -0.039 4.039 17 C -0.215 4.215 18 C -0.208 4.208 19 H 0.080 0.920 20 H 0.078 0.922 21 H 0.052 0.948 22 H 0.269 0.731 23 H 0.145 0.855 24 H 0.109 0.891 25 H 0.138 0.862 26 H 0.146 0.854 27 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 10.068 -1.551 -0.942 10.231 hybrid contribution -0.498 0.753 -0.127 0.911 sum 9.570 -0.799 -1.069 9.663 Atomic orbital electron populations 1.70027 1.08205 1.28505 1.50612 1.25676 0.95429 1.02668 0.93530 0.85971 0.79991 0.78994 0.79801 1.18770 1.20399 1.16258 1.21285 0.90312 0.93371 1.52506 0.94997 1.19761 0.93782 0.77118 0.98628 1.45761 1.64368 1.13332 0.99964 1.26920 0.94915 0.92444 0.92160 1.71329 1.27310 1.10460 1.14824 1.70534 1.15842 1.28439 0.94001 1.31080 1.05682 0.91619 1.05521 1.86155 1.64369 1.22989 0.99929 1.21780 1.06681 0.95968 0.79435 1.23421 0.96771 1.03682 0.97628 1.23497 0.92928 1.03006 1.01385 0.92029 0.92244 0.94795 0.73095 0.85548 0.89079 0.86238 0.85369 0.88881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.74 13.96 21.45 0.30 -54.44 15 2 C 0.03 1.45 5.47 84.65 0.46 1.91 15 3 Si 0.93 39.33 27.47 68.60 1.88 41.22 15 4 H -0.26 -10.79 7.11 99.48 0.71 -10.08 15 5 H -0.28 -11.70 7.11 99.48 0.71 -10.99 15 6 H -0.24 -9.07 6.54 99.48 0.65 -8.42 15 7 C -0.54 -28.31 9.46 25.60 0.24 -28.07 15 8 H 0.03 1.96 8.06 -2.91 -0.02 1.94 15 9 C 0.23 9.93 3.48 85.63 0.30 10.23 15 10 N -0.52 -21.41 2.91 -684.99 -2.00 -23.40 15 11 C 0.31 12.59 8.04 179.13 1.44 14.03 15 12 N -0.39 -15.93 11.05 -55.84 -0.62 -16.54 15 13 N -0.26 -9.47 11.55 -57.41 -0.66 -10.14 15 14 C -0.03 -0.97 12.68 130.61 1.66 0.68 15 15 S 0.03 1.09 22.31 -56.49 -1.26 -0.17 15 16 C 0.07 2.37 6.42 44.99 0.29 2.66 15 17 C -0.18 -5.61 9.72 30.59 0.30 -5.32 15 18 C -0.17 -4.65 10.02 30.59 0.31 -4.34 15 19 H 0.27 14.77 8.31 -92.71 -0.77 14.00 15 20 H 0.06 2.44 5.31 -2.39 -0.01 2.43 15 21 H 0.03 1.45 6.69 -2.38 -0.02 1.44 15 22 H 0.25 4.68 8.06 -2.91 -0.02 4.66 15 23 H 0.13 4.42 7.86 -2.39 -0.02 4.40 15 24 H 0.09 3.41 6.29 -2.39 -0.02 3.40 15 25 H 0.12 3.19 8.14 -2.38 -0.02 3.18 15 26 H 0.13 2.73 8.14 -2.39 -0.02 2.72 15 27 H 0.09 2.58 7.82 -2.39 -0.02 2.56 15 Total: -1.00 -64.24 249.99 3.77 -60.47 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: 1.13 Total: 11.22 kcal Atomic # 6 Polarization: -13.21 SS G_CDS: 4.99 Total: -8.21 kcal Atomic # 7 Polarization: -101.54 SS G_CDS: -2.98 Total: -104.52 kcal Atomic # 14 Polarization: 39.33 SS G_CDS: 1.88 Total: 41.22 kcal Atomic # 16 Polarization: 1.09 SS G_CDS: -1.26 Total: -0.17 kcal Total: -64.24 3.77 -60.47 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069965427.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.057 kcal (2) G-P(sol) polarization free energy of solvation -64.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds