Wall clock time and date at job start Mon Mar 30 2020 03:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00136 * 2 1 4 4 C 1.50703 * 109.47219 * 269.99493 * 3 2 1 5 5 H 1.07996 * 119.99587 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00012 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00204 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 119.99711 * 180.02562 * 6 4 3 9 9 H 1.48492 * 109.47488 * 59.99905 * 8 6 4 10 10 H 1.48498 * 109.46955 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47344 * 299.99422 * 8 6 4 12 12 C 1.38255 * 120.00013 * 179.97438 * 2 1 3 13 13 C 1.36313 * 124.61160 * 359.97438 * 12 2 1 14 14 C 1.36644 * 114.77141 * 180.02562 * 13 12 2 15 15 C 1.37492 * 113.45613 * 0.02562 * 14 13 12 16 16 C 1.40431 * 125.33321 * 179.97438 * 15 14 13 17 17 O 1.21559 * 120.00199 * 0.02562 * 16 15 14 18 18 S 1.70611 * 124.61745 * 179.70297 * 12 2 1 19 19 H 1.08996 * 109.47008 * 270.00543 * 1 2 3 20 20 H 1.08997 * 109.46865 * 30.00228 * 1 2 3 21 21 H 1.08998 * 109.47058 * 149.99741 * 1 2 3 22 22 H 1.08998 * 109.47416 * 29.99674 * 3 2 1 23 23 H 1.09008 * 109.47058 * 150.00274 * 3 2 1 24 24 H 0.97000 * 120.00290 * 180.02562 * 7 6 4 25 25 H 1.07994 * 122.61479 * 359.97438 * 13 12 2 26 26 H 1.07996 * 123.27550 * 179.97438 * 14 13 12 27 27 H 1.08010 * 120.00049 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 1 2.0983 1.0956 -2.2416 6 6 3.1271 2.8773 -1.6727 7 7 3.5552 3.6170 -0.6732 8 14 3.4379 3.4168 -3.4340 9 1 2.1403 3.5952 -4.1334 10 1 4.1805 4.7028 -3.4340 11 1 4.2397 2.3817 -4.1346 12 6 2.1563 -1.1973 0.0005 13 6 1.5718 -2.4288 0.0016 14 6 2.4472 -3.4780 0.0025 15 6 3.7663 -3.0902 0.0028 16 6 4.8687 -3.9602 0.0042 17 8 4.6936 -5.1631 0.0048 18 16 3.8568 -1.3347 -0.0067 19 1 -0.3633 0.0001 1.0276 20 1 -0.3633 0.8900 -0.5139 21 1 -0.3633 -0.8899 -0.5139 22 1 1.6085 2.0284 0.5138 23 1 3.1500 1.1383 0.5138 24 1 4.0321 4.4429 -0.8504 25 1 0.5005 -2.5646 0.0025 26 1 2.1336 -4.5114 0.0038 27 1 5.8721 -3.5605 0.0047 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070609211.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:40 Heat of formation + Delta-G solvation = -4.138179 kcal Electronic energy + Delta-G solvation = -12857.967530 eV Core-core repulsion = 10514.617039 eV Total energy + Delta-G solvation = -2343.350491 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.74745 -37.75963 -35.31846 -32.84282 -29.16125 -28.20476 -26.36835 -24.14648 -21.87206 -21.45962 -18.31819 -17.48528 -16.74039 -15.79525 -15.34751 -14.60096 -14.28950 -13.99981 -13.84780 -13.66694 -12.62462 -12.33610 -12.07615 -11.96470 -11.55405 -11.48865 -11.05701 -10.88451 -10.37721 -10.13376 -10.05012 -9.35118 -9.12788 -8.70939 -8.05405 -6.74860 -6.26004 -4.41170 1.06370 1.92477 2.57951 2.78074 3.17729 3.23015 3.25727 3.62087 3.75039 4.24135 4.99489 5.01850 5.50115 5.56467 5.76492 5.90831 5.98265 6.10676 6.26713 6.52378 6.82171 6.87496 6.91383 7.48862 7.68880 7.78931 7.84064 8.01896 8.64850 9.27326 10.75012 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.032540 B = 0.008105 C = 0.007116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.269340 B = 3453.677077 C = 3934.014763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.560 5.560 3 C 0.238 3.762 4 C -0.545 4.545 5 H 0.063 0.937 6 C 0.068 3.932 7 N -0.889 5.889 8 Si 0.901 3.099 9 H -0.275 1.275 10 H -0.284 1.284 11 H -0.272 1.272 12 C 0.160 3.840 13 C -0.317 4.317 14 C 0.027 3.973 15 C -0.431 4.431 16 C 0.416 3.584 17 O -0.507 6.507 18 S 0.224 5.776 19 H 0.049 0.951 20 H 0.078 0.922 21 H 0.063 0.937 22 H 0.044 0.956 23 H 0.040 0.960 24 H 0.269 0.731 25 H 0.132 0.868 26 H 0.136 0.864 27 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.353 -5.725 1.725 6.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.264 5.264 3 C 0.119 3.881 4 C -0.583 4.583 5 H 0.081 0.919 6 C -0.136 4.136 7 N -0.527 5.527 8 Si 0.728 3.272 9 H -0.201 1.201 10 H -0.210 1.210 11 H -0.198 1.198 12 C -0.074 4.074 13 C -0.347 4.347 14 C -0.006 4.006 15 C -0.550 4.550 16 C 0.282 3.718 17 O -0.389 6.389 18 S 0.481 5.519 19 H 0.067 0.933 20 H 0.096 0.904 21 H 0.081 0.919 22 H 0.062 0.938 23 H 0.058 0.942 24 H 0.078 0.922 25 H 0.150 0.850 26 H 0.154 0.846 27 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.311 -4.915 1.772 5.387 hybrid contribution -1.215 -0.308 -0.971 1.586 sum -2.527 -5.223 0.802 5.858 Atomic orbital electron populations 1.21703 0.79596 1.02997 1.00856 1.46776 1.05529 1.03562 1.70500 1.19661 0.91958 0.78255 0.98233 1.21378 1.37982 1.07238 0.91732 0.91869 1.24936 0.94815 0.95949 0.97863 1.69901 1.37345 1.14330 1.31112 0.86500 0.78631 0.78080 0.84025 1.20077 1.20963 1.19763 1.22525 0.98558 0.90531 0.95771 1.19706 1.00837 0.89877 1.24312 1.20367 0.90881 0.99226 0.90135 1.23682 0.99355 0.98529 1.33404 1.21012 0.92268 0.87684 0.70861 1.90534 1.89697 1.17977 1.40659 1.83421 0.97420 0.99208 1.71893 0.93293 0.90353 0.91858 0.93767 0.94220 0.92177 0.85034 0.84590 0.90267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.45 10.34 59.85 0.62 2.07 15 2 N -0.56 -10.87 2.95 -183.60 -0.54 -11.42 15 3 C 0.24 5.44 5.11 -5.19 -0.03 5.42 15 4 C -0.54 -13.73 9.39 -34.44 -0.32 -14.05 15 5 H 0.06 1.62 7.81 -52.49 -0.41 1.21 15 6 C 0.07 1.76 5.46 -17.82 -0.10 1.66 15 7 N -0.89 -23.88 13.29 55.43 0.74 -23.15 15 8 Si 0.90 20.08 29.54 -169.99 -5.02 15.06 15 9 H -0.28 -6.08 7.11 56.52 0.40 -5.68 15 10 H -0.28 -6.28 7.11 56.52 0.40 -5.88 15 11 H -0.27 -6.07 7.11 56.52 0.40 -5.66 15 12 C 0.16 3.01 6.85 -15.35 -0.11 2.91 15 13 C -0.32 -5.40 9.39 -40.85 -0.38 -5.79 15 14 C 0.03 0.45 9.91 -40.43 -0.40 0.05 15 15 C -0.43 -7.46 6.23 -39.03 -0.24 -7.71 15 16 C 0.42 6.84 11.42 31.56 0.36 7.20 15 17 O -0.51 -9.75 17.53 5.31 0.09 -9.66 15 18 S 0.22 4.06 21.45 -107.50 -2.31 1.75 15 19 H 0.05 0.67 8.14 -51.93 -0.42 0.24 15 20 H 0.08 1.22 8.07 -51.93 -0.42 0.80 15 21 H 0.06 0.87 6.59 -51.93 -0.34 0.53 15 22 H 0.04 1.05 8.07 -51.93 -0.42 0.63 15 23 H 0.04 0.96 7.02 -51.92 -0.36 0.59 15 24 H 0.27 6.87 8.31 -40.82 -0.34 6.53 15 25 H 0.13 1.98 6.79 -52.49 -0.36 1.62 15 26 H 0.14 2.12 8.01 -52.49 -0.42 1.70 15 27 H 0.08 1.06 8.06 -52.48 -0.42 0.64 15 LS Contribution 257.04 15.07 3.87 3.87 Total: -1.00 -28.01 257.04 -6.48 -34.49 By element: Atomic # 1 Polarization: -0.01 SS G_CDS: -2.71 Total: -2.72 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: -0.60 Total: -8.23 kcal Atomic # 7 Polarization: -34.76 SS G_CDS: 0.19 Total: -34.56 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.09 Total: -9.66 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Atomic # 16 Polarization: 4.06 SS G_CDS: -2.31 Total: 1.75 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -28.01 -6.48 -34.49 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070609211.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.351 kcal (2) G-P(sol) polarization free energy of solvation -28.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds