Wall clock time and date at job start Mon Mar 30 2020 03:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00136 * 2 1 4 4 C 1.50703 * 109.47219 * 269.99493 * 3 2 1 5 5 H 1.07996 * 119.99587 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00012 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00204 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 119.99711 * 180.02562 * 6 4 3 9 9 H 1.48492 * 109.47488 * 59.99905 * 8 6 4 10 10 H 1.48498 * 109.46955 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47344 * 299.99422 * 8 6 4 12 12 C 1.38255 * 120.00013 * 179.97438 * 2 1 3 13 13 C 1.36313 * 124.61160 * 359.97438 * 12 2 1 14 14 C 1.36644 * 114.77141 * 180.02562 * 13 12 2 15 15 C 1.37492 * 113.45613 * 0.02562 * 14 13 12 16 16 C 1.40431 * 125.33321 * 179.97438 * 15 14 13 17 17 O 1.21559 * 120.00199 * 0.02562 * 16 15 14 18 18 S 1.70611 * 124.61745 * 179.70297 * 12 2 1 19 19 H 1.08996 * 109.47008 * 270.00543 * 1 2 3 20 20 H 1.08997 * 109.46865 * 30.00228 * 1 2 3 21 21 H 1.08998 * 109.47058 * 149.99741 * 1 2 3 22 22 H 1.08998 * 109.47416 * 29.99674 * 3 2 1 23 23 H 1.09008 * 109.47058 * 150.00274 * 3 2 1 24 24 H 0.97000 * 120.00290 * 180.02562 * 7 6 4 25 25 H 1.07994 * 122.61479 * 359.97438 * 13 12 2 26 26 H 1.07996 * 123.27550 * 179.97438 * 14 13 12 27 27 H 1.08010 * 120.00049 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 1 2.0983 1.0956 -2.2416 6 6 3.1271 2.8773 -1.6727 7 7 3.5552 3.6170 -0.6732 8 14 3.4379 3.4168 -3.4340 9 1 2.1403 3.5952 -4.1334 10 1 4.1805 4.7028 -3.4340 11 1 4.2397 2.3817 -4.1346 12 6 2.1563 -1.1973 0.0005 13 6 1.5718 -2.4288 0.0016 14 6 2.4472 -3.4780 0.0025 15 6 3.7663 -3.0902 0.0028 16 6 4.8687 -3.9602 0.0042 17 8 4.6936 -5.1631 0.0048 18 16 3.8568 -1.3347 -0.0067 19 1 -0.3633 0.0001 1.0276 20 1 -0.3633 0.8900 -0.5139 21 1 -0.3633 -0.8899 -0.5139 22 1 1.6085 2.0284 0.5138 23 1 3.1500 1.1383 0.5138 24 1 4.0321 4.4429 -0.8504 25 1 0.5005 -2.5646 0.0025 26 1 2.1336 -4.5114 0.0038 27 1 5.8721 -3.5605 0.0047 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070609211.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:39 Heat of formation + Delta-G solvation = -19.945689 kcal Electronic energy + Delta-G solvation = -12858.652995 eV Core-core repulsion = 10514.617039 eV Total energy + Delta-G solvation = -2344.035956 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.13327 -39.19497 -36.79761 -34.72073 -30.67375 -29.74810 -27.81180 -25.81539 -23.40969 -22.86321 -19.69160 -18.96227 -18.60843 -17.18390 -16.93863 -16.23184 -15.74836 -15.38958 -15.33332 -15.08614 -14.21502 -13.91890 -13.50746 -13.40044 -13.11893 -13.05230 -12.63035 -12.60824 -12.16782 -11.83839 -11.55524 -10.72352 -10.67974 -10.64784 -9.45854 -8.42377 -7.98987 -6.42268 -0.32789 0.52491 1.18417 1.40592 1.41834 1.44068 1.50594 2.23711 2.28678 2.42615 3.04746 3.77949 4.19186 4.29786 4.56915 4.62127 4.71641 4.82265 4.89301 4.96498 5.06407 5.43360 5.51677 5.59788 5.93061 6.05659 6.31941 6.69609 6.69972 7.29672 8.79240 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.032540 B = 0.008105 C = 0.007116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.269340 B = 3453.677077 C = 3934.014763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.572 5.572 3 C 0.252 3.748 4 C -0.550 4.550 5 H 0.055 0.945 6 C 0.024 3.976 7 N -0.920 5.920 8 Si 0.957 3.043 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.271 1.271 12 C 0.138 3.862 13 C -0.304 4.304 14 C 0.021 3.979 15 C -0.429 4.429 16 C 0.420 3.580 17 O -0.534 6.534 18 S 0.204 5.796 19 H 0.068 0.932 20 H 0.072 0.928 21 H 0.082 0.918 22 H 0.030 0.970 23 H 0.023 0.977 24 H 0.270 0.730 25 H 0.154 0.846 26 H 0.152 0.848 27 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.713 -6.562 1.157 7.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.278 5.278 3 C 0.131 3.869 4 C -0.588 4.588 5 H 0.074 0.926 6 C -0.177 4.177 7 N -0.558 5.558 8 Si 0.782 3.218 9 H -0.195 1.195 10 H -0.206 1.206 11 H -0.196 1.196 12 C -0.094 4.094 13 C -0.335 4.335 14 C -0.012 4.012 15 C -0.548 4.548 16 C 0.287 3.713 17 O -0.417 6.417 18 S 0.462 5.538 19 H 0.086 0.914 20 H 0.091 0.909 21 H 0.101 0.899 22 H 0.048 0.952 23 H 0.041 0.959 24 H 0.079 0.921 25 H 0.172 0.828 26 H 0.170 0.830 27 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -1.683 -5.764 1.205 6.125 hybrid contribution -1.106 -0.132 -0.761 1.349 sum -2.788 -5.897 0.444 6.538 Atomic orbital electron populations 1.21882 0.77412 1.03672 1.02317 1.46624 1.06751 1.02551 1.71841 1.19219 0.91398 0.79623 0.96646 1.21594 1.37508 1.07102 0.92645 0.92647 1.25654 0.94722 0.96126 1.01206 1.69992 1.38226 1.14771 1.32830 0.85613 0.78594 0.77671 0.79922 1.19509 1.20596 1.19602 1.22725 0.98666 0.90917 0.97086 1.19933 1.02031 0.88936 1.22552 1.20638 0.90779 1.00034 0.89755 1.23898 1.00109 0.97916 1.32869 1.21486 0.93456 0.86960 0.69384 1.90533 1.90165 1.19090 1.41880 1.83471 0.98110 1.00232 1.72023 0.91392 0.90950 0.89898 0.95222 0.95897 0.92107 0.82808 0.83028 0.86599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.67 10.34 127.77 1.32 3.99 15 2 N -0.57 -21.82 2.95 -734.80 -2.17 -23.99 15 3 C 0.25 11.63 5.11 85.63 0.44 12.07 15 4 C -0.55 -27.74 9.39 25.60 0.24 -27.50 15 5 H 0.06 2.83 7.81 -2.91 -0.02 2.81 15 6 C 0.02 1.23 5.46 84.65 0.46 1.69 15 7 N -0.92 -49.72 13.29 21.45 0.28 -49.43 15 8 Si 0.96 40.82 29.54 68.60 2.03 42.84 15 9 H -0.27 -11.21 7.11 99.48 0.71 -10.50 15 10 H -0.28 -11.73 7.11 99.48 0.71 -11.02 15 11 H -0.27 -11.40 7.11 99.48 0.71 -10.70 15 12 C 0.14 5.03 6.85 83.23 0.57 5.60 15 13 C -0.30 -9.64 9.39 21.45 0.20 -9.44 15 14 C 0.02 0.65 9.91 21.72 0.22 0.87 15 15 C -0.43 -14.07 6.23 22.63 0.14 -13.93 15 16 C 0.42 12.90 11.42 68.35 0.78 13.68 15 17 O -0.53 -19.49 17.53 -3.90 -0.07 -19.56 15 18 S 0.20 7.25 21.45 -56.49 -1.21 6.04 15 19 H 0.07 1.72 8.14 -2.39 -0.02 1.70 15 20 H 0.07 2.18 8.07 -2.39 -0.02 2.16 15 21 H 0.08 2.08 6.59 -2.39 -0.02 2.06 15 22 H 0.03 1.44 8.07 -2.39 -0.02 1.42 15 23 H 0.02 1.13 7.02 -2.38 -0.02 1.12 15 24 H 0.27 13.86 8.31 -92.71 -0.77 13.08 15 25 H 0.15 4.12 6.79 -2.91 -0.02 4.10 15 26 H 0.15 4.31 8.01 -2.91 -0.02 4.29 15 27 H 0.12 2.76 8.06 -2.91 -0.02 2.73 15 Total: -1.00 -58.22 257.04 4.40 -53.81 By element: Atomic # 1 Polarization: 2.09 SS G_CDS: 1.17 Total: 3.26 kcal Atomic # 6 Polarization: -17.35 SS G_CDS: 4.37 Total: -12.98 kcal Atomic # 7 Polarization: -71.54 SS G_CDS: -1.88 Total: -73.42 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -0.07 Total: -19.56 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 2.03 Total: 42.84 kcal Atomic # 16 Polarization: 7.25 SS G_CDS: -1.21 Total: 6.04 kcal Total: -58.22 4.40 -53.81 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070609211.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.867 kcal (2) G-P(sol) polarization free energy of solvation -58.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds