Wall clock time and date at job start Mon Mar 30 2020 02:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 119.99924 * 2 1 4 4 H 1.48501 * 109.47354 * 270.00513 * 3 2 1 5 5 H 1.48502 * 109.46796 * 30.00293 * 3 2 1 6 6 H 1.48493 * 109.47035 * 150.00182 * 3 2 1 7 7 C 1.37870 * 120.00368 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00672 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99935 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.46908 * 59.99530 * 9 7 2 11 11 C 1.53031 * 109.48004 * 299.98677 * 9 7 2 12 12 C 1.52123 * 108.72745 * 188.77277 * 11 9 7 13 13 N 1.32520 * 124.20164 * 197.58121 * 12 11 9 14 14 C 1.28669 * 117.87952 * 179.97438 * 13 12 11 15 15 S 1.70912 * 110.14069 * 359.76131 * 14 13 12 16 16 C 1.34621 * 122.63957 * 17.54189 * 12 11 9 17 17 C 1.50996 * 125.22603 * 0.04311 * 16 12 11 18 18 H 1.09002 * 109.61671 * 135.96507 * 17 16 12 19 19 O 1.42896 * 109.61646 * 256.32019 * 17 16 12 20 20 C 1.53147 * 109.47496 * 180.02562 * 9 7 2 21 21 H 0.97008 * 120.00252 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.58902 * 308.54228 * 11 9 7 23 23 H 1.08999 * 109.59364 * 68.84105 * 11 9 7 24 24 H 1.07999 * 124.92937 * 179.97438 * 14 13 12 25 25 H 0.96696 * 114.00183 * 300.00033 * 19 17 16 26 26 H 1.08992 * 109.54538 * 70.52779 * 20 9 7 27 27 H 1.09002 * 109.54698 * 310.23180 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6240 -2.5566 -0.8902 11 6 0.3719 -2.5809 1.2494 12 6 -0.2095 -3.9832 1.3467 13 7 -1.2547 -4.3060 2.0948 14 6 -1.6455 -5.5319 2.0856 15 16 -0.6545 -6.4578 1.0455 16 6 0.2990 -5.0288 0.6680 17 6 1.4868 -4.9687 -0.2622 18 1 2.1416 -5.8198 -0.0752 19 8 1.0364 -4.9989 -1.6180 20 6 2.2463 -3.6632 -0.0005 21 1 -0.4851 0.8401 0.0004 22 1 0.9740 -2.3726 2.1339 23 1 -0.4353 -1.8521 1.1768 24 1 -2.4808 -5.9189 2.6503 25 1 0.5351 -5.7931 -1.8484 26 1 2.7435 -3.7179 0.9678 27 1 2.9875 -3.5093 -0.7847 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075596764.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:48 Heat of formation + Delta-G solvation = -15.297216 kcal Electronic energy + Delta-G solvation = -13511.398709 eV Core-core repulsion = 11167.564325 eV Total energy + Delta-G solvation = -2343.834383 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.62531 -37.03716 -34.62607 -32.03893 -29.10188 -28.69895 -25.11403 -24.07756 -22.17472 -20.22727 -18.22547 -17.76867 -16.53383 -15.95339 -14.97026 -14.46046 -14.16405 -13.95136 -13.43962 -13.00270 -12.69710 -12.07094 -11.61241 -11.34655 -10.95152 -10.76639 -10.39230 -10.34356 -10.12194 -9.78969 -9.32816 -9.03592 -8.89361 -8.86545 -8.43050 -8.08503 -5.99717 -4.06313 1.11523 1.74337 2.09645 3.31783 3.34256 3.39350 3.41877 4.43753 4.61511 4.79474 5.24740 5.32380 5.42487 5.64407 5.84525 6.21744 6.45175 6.58449 6.69472 6.90541 7.03608 7.24701 7.70116 7.91799 8.00586 8.06222 8.24954 8.39677 8.97767 9.58885 11.07101 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.043294 B = 0.008777 C = 0.007738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.587886 B = 3189.258130 C = 3617.707242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.516 4.516 8 H 0.059 0.941 9 C 0.053 3.947 10 H 0.041 0.959 11 C -0.037 4.037 12 C 0.105 3.895 13 N -0.469 5.469 14 C 0.026 3.974 15 S 0.053 5.947 16 C -0.265 4.265 17 C 0.188 3.812 18 H 0.054 0.946 19 O -0.545 6.545 20 C -0.101 4.101 21 H 0.262 0.738 22 H 0.063 0.937 23 H 0.110 0.890 24 H 0.193 0.807 25 H 0.365 0.635 26 H 0.065 0.935 27 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.587 -11.962 1.907 12.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.139 4.139 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.554 4.554 8 H 0.077 0.923 9 C 0.034 3.966 10 H 0.059 0.941 11 C -0.077 4.077 12 C -0.025 4.025 13 N -0.182 5.182 14 C -0.274 4.274 15 S 0.306 5.694 16 C -0.385 4.385 17 C 0.127 3.873 18 H 0.072 0.928 19 O -0.349 6.349 20 C -0.139 4.139 21 H 0.072 0.928 22 H 0.082 0.918 23 H 0.128 0.872 24 H 0.210 0.790 25 H 0.210 0.790 26 H 0.084 0.916 27 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.762 -11.946 1.965 12.130 hybrid contribution 0.139 0.988 0.185 1.015 sum -0.623 -10.958 2.150 11.184 Atomic orbital electron populations 1.69882 1.05920 1.26648 1.50228 1.24997 0.94851 0.99195 0.94879 0.86579 0.79826 0.83408 0.78103 1.20676 1.21256 1.19882 1.21130 0.92952 0.90188 1.51123 0.92307 1.18679 0.92408 0.91664 0.93824 0.94112 1.20932 1.00690 0.86013 1.00054 1.22116 0.89801 0.99167 0.91423 1.66021 1.13994 1.16872 1.21362 1.28134 1.04356 0.92003 1.02882 1.83484 1.26893 1.15580 1.43454 1.26847 1.06993 0.94386 1.10250 1.20359 0.88602 0.99736 0.78627 0.92777 1.86711 1.75214 1.45958 1.27041 1.21820 0.98747 0.92495 1.00881 0.92840 0.91827 0.87199 0.79048 0.78992 0.91595 0.91111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.52 11.44 55.43 0.63 -24.89 15 2 C 0.06 1.72 5.30 -17.82 -0.09 1.63 15 3 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 15 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 15 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 15 7 C -0.52 -14.00 8.53 -34.44 -0.29 -14.29 15 8 H 0.06 1.55 7.74 -52.48 -0.41 1.15 15 9 C 0.05 1.33 2.03 -91.68 -0.19 1.15 15 10 H 0.04 1.16 7.76 -51.93 -0.40 0.75 15 11 C -0.04 -0.90 5.21 -27.16 -0.14 -1.04 15 12 C 0.10 2.26 6.78 -82.87 -0.56 1.69 15 13 N -0.47 -9.45 10.51 -11.16 -0.12 -9.57 15 14 C 0.03 0.40 12.22 51.44 0.63 1.03 15 15 S 0.05 0.76 23.21 -107.50 -2.50 -1.73 15 16 C -0.26 -4.96 6.00 -35.44 -0.21 -5.17 15 17 C 0.19 3.41 3.90 -27.59 -0.11 3.30 15 18 H 0.05 0.83 8.14 -51.93 -0.42 0.41 15 19 O -0.55 -9.90 12.93 -35.23 -0.46 -10.36 15 20 C -0.10 -2.09 4.88 -26.51 -0.13 -2.22 15 21 H 0.26 7.18 8.31 -40.82 -0.34 6.85 15 22 H 0.06 1.55 8.12 -51.93 -0.42 1.12 15 23 H 0.11 3.02 6.37 -51.93 -0.33 2.69 15 24 H 0.19 2.15 8.06 -52.49 -0.42 1.72 15 25 H 0.36 4.92 9.08 45.56 0.41 5.33 15 26 H 0.07 1.30 8.11 -51.93 -0.42 0.87 15 27 H 0.07 1.46 8.11 -51.93 -0.42 1.04 15 LS Contribution 243.60 15.07 3.67 3.67 Total: -1.00 -30.42 243.60 -6.85 -37.28 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -1.97 Total: 3.37 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: -1.10 Total: -13.92 kcal Atomic # 7 Polarization: -34.97 SS G_CDS: 0.52 Total: -34.45 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: -0.46 Total: -10.36 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 0.76 SS G_CDS: -2.50 Total: -1.73 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -30.42 -6.85 -37.28 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075596764.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.981 kcal (2) G-P(sol) polarization free energy of solvation -30.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds